Shiri Freilich - Publications

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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, ... ... Freilich S, et al. Challenges in microbial ecology: building predictive understanding of community function and dynamics. The Isme Journal. PMID 27022995 DOI: 10.1038/Ismej.2016.45  0.48
2015 Mayrose I, Freilich S. The Interplay between Scientific Overlap and Cooperation and the Resulting Gain in Co-Authorship Interactions. Plos One. 10: e0137856. PMID 26372643 DOI: 10.1371/Journal.Pone.0137856  0.48
2015 Levy R, Carr R, Kreimer A, Freilich S, Borenstein E. NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation. Bmc Bioinformatics. 16: 164. PMID 25980407 DOI: 10.1186/S12859-015-0588-Y  0.48
2015 Freilich S, Lev S, Gonda I, Reuveni E, Portnoy V, Oren E, Lohse M, Galpaz N, Bar E, Tzuri G, Wissotsky G, Meir A, Burger J, Tadmor Y, Schaffer A, et al. Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits. Bmc Plant Biology. 15: 71. PMID 25887588 DOI: 10.1186/S12870-015-0449-X  0.48
2014 Zchori-Fein E, Lahav T, Freilich S. Variations in the identity and complexity of endosymbiont combinations in whitefly hosts. Frontiers in Microbiology. 5: 310. PMID 25071729 DOI: 10.3389/Fmicb.2014.00310  0.48
2014 Zarecki R, Oberhardt MA, Yizhak K, Wagner A, Shtifman Segal E, Freilich S, Henry CS, Gophna U, Ruppin E. Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms. Plos One. 9: e98372. PMID 24866123 DOI: 10.1371/Journal.Pone.0098372  0.48
2012 Kreimer A, Doron-Faigenboim A, Borenstein E, Freilich S. NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species. Bioinformatics (Oxford, England). 28: 2195-7. PMID 22668793 DOI: 10.1093/Bioinformatics/Bts323  0.48
2012 Persi E, Weingart U, Freilich S, Horn D. Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic data. Bmc Genomics. 13: 65. PMID 22325056 DOI: 10.1186/1471-2164-13-65  0.48
2011 Freilich S, Zarecki R, Eilam O, Segal ES, Henry CS, Kupiec M, Gophna U, Sharan R, Ruppin E. Competitive and cooperative metabolic interactions in bacterial communities. Nature Communications. 2: 589. PMID 22158444 DOI: 10.1038/Ncomms1597  0.48
2011 Ainali C, Simon M, Freilich S, Espinosa O, Hazelwood L, Tsoka S, Ouzounis CA, Hancock JM. Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins. Bmc Evolutionary Biology. 11: 142. PMID 21612628 DOI: 10.1186/1471-2148-11-142  0.48
2011 Tuller T, Girshovich Y, Sella Y, Kreimer A, Freilich S, Kupiec M, Gophna U, Ruppin E. Association between translation efficiency and horizontal gene transfer within microbial communities. Nucleic Acids Research. 39: 4743-55. PMID 21343180 DOI: 10.1093/Nar/Gkr054  0.48
2010 Freilich S, Kreimer A, Borenstein E, Gophna U, Sharan R, Ruppin E. Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species. Plos Computational Biology. 6: e1000690. PMID 20195496 DOI: 10.1371/Journal.Pcbi.1000690  0.48
2010 Freilich S, Kreimer A, Meilijson I, Gophna U, Sharan R, Ruppin E. The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Research. 38: 3857-68. PMID 20194113 DOI: 10.1093/Nar/Gkq118  0.48
2009 Freilich S, Goldovsky L, Gottlieb A, Blanc E, Tsoka S, Ouzounis CA. Stratification of co-evolving genomic groups using ranked phylogenetic profiles. Bmc Bioinformatics. 10: 355. PMID 19860884 DOI: 10.1186/1471-2105-10-355  0.48
2009 Freilich S, Kreimer A, Borenstein E, Yosef N, Sharan R, Gophna U, Ruppin E. Metabolic-network-driven analysis of bacterial ecological strategies. Genome Biology. 10: R61. PMID 19500338 DOI: 10.1186/Gb-2009-10-6-R61  0.48
2009 Huminiecki L, Goldovsky L, Freilich S, Moustakas A, Ouzounis C, Heldin CH. Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom. Bmc Evolutionary Biology. 9: 28. PMID 19192293 DOI: 10.1186/1471-2148-9-28  0.48
2008 Freilich S, Goldovsky L, Ouzounis CA, Thornton JM. Metabolic innovations towards the human lineage. Bmc Evolutionary Biology. 8: 247. PMID 18782449 DOI: 10.1186/1471-2148-8-247  0.48
2007 Kamburov A, Goldovsky L, Freilich S, Kapazoglou A, Kunin V, Enright AJ, Tsaftaris A, Ouzounis CA. Denoising inferred functional association networks obtained by gene fusion analysis. Bmc Genomics. 8: 460. PMID 18081932 DOI: 10.1186/1471-2164-8-460  0.48
2007 Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ. Construction, visualisation, and clustering of transcription networks from microarray expression data. Plos Computational Biology. 3: 2032-42. PMID 17967053 DOI: 10.1371/Journal.Pcbi.0030206  0.48
2006 Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM. Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins. Genome Biology. 7: R89. PMID 17029626 DOI: 10.1186/Gb-2006-7-10-R89  0.48
2005 Freilich S, Massingham T, Bhattacharyya S, Ponsting H, Lyons PA, Freeman TC, Thornton JM. Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins. Genome Biology. 6: R56. PMID 15998445 DOI: 10.1186/Gb-2005-6-7-R56  0.48
2005 Freilich S, Spriggs RV, George RA, Al-Lazikani B, Swindells M, Thornton JM. The complement of enzymatic sets in different species. Journal of Molecular Biology. 349: 745-63. PMID 15896806 DOI: 10.1016/J.Jmb.2005.04.027  0.48
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