Nick Goldman - Related publications

European Bioinformatics Institute, Hinxton, England, United Kingdom 
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34 most relevant papers in past 60 days:
Year Citation  Score
2021 Bernard G, Stephens TG, González-Pech RA, Chan CX. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods. Methods in Molecular Biology (Clifton, N.J.). 2242: 69-76. PMID 33961218 DOI: 10.1007/978-1-0716-1099-2_5   
2021 Ping J, Feng P, Li J, Zhang R, Su Y, Wang T. Molecular evolution and SSRs analysis based on the chloroplast genome of . Ecology and Evolution. 11: 4786-4802. PMID 33976848 DOI: 10.1002/ece3.7381   
2021 Knyshov A, Gordon ERL, Weirauch C. New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics. Peerj. 9: e11019. PMID 33850647 DOI: 10.7717/peerj.11019   
2021 Snipen L, Angell IL, Rognes T, Rudi K. Reduced metagenome sequencing for strain-resolution taxonomic profiles. Microbiome. 9: 79. PMID 33781324 DOI: 10.1186/s40168-021-01019-8   
2021 Keller A, Ankenbrand MJ. Inferring Core Genome Phylogenies for Bacteria. Methods in Molecular Biology (Clifton, N.J.). 2242: 59-68. PMID 33961217 DOI: 10.1007/978-1-0716-1099-2_4   
2021 Jiang M, Li Y, Chen H, Wang B, Liu C. Comparative and phylogenetic analysis of the complete chloroplast genome sequences of and . Mitochondrial Dna. Part B, Resources. 6: 1498-1506. PMID 33969207 DOI: 10.1080/23802359.2021.1911700   
2021 Zhou J, Zhang S, Wang J, Shen H, Ai B, Gao W, Zhang C, Fei Q, Yuan D, Wu Z, Tembrock LR, Li S, Gu C, Liao X. Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution. Scientific Reports. 11: 9471. PMID 33947883 DOI: 10.1038/s41598-021-88160-4   
2021 Lopes M, Louzada S, Gama-Carvalho M, Chaves R. Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time. International Journal of Molecular Sciences. 22. PMID 33946766 DOI: 10.3390/ijms22094707   
2021 Turakhia Y, Thornlow B, Hinrichs AS, De Maio N, Gozashti L, Lanfear R, Haussler D, Corbett-Detig R. Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic. Nature Genetics. PMID 33972780 DOI: 10.1038/s41588-021-00862-7   
2021 Suehiro Y, Yoshina S, Motohashi T, Iwata S, Dejima K, Mitani S. Efficient collection of a large number of mutations by mutagenesis of DNA damage response defective animals. Scientific Reports. 11: 7630. PMID 33828169 DOI: 10.1038/s41598-021-87226-7   
2021 Gu H, Zhang P, Xu M, Liang D. Amplicon genome fishing (AGF): a rapid and efficient method for sequencing target cis-regulatory regions in nonmodel organisms. Molecular Genetics and Genomics : Mgg. PMID 33797587 DOI: 10.1007/s00438-021-01775-0   
2021 Yan Y, Chaturvedi N, Appuswamy R. Accel-Align: a fast sequence mapper and aligner based on the seed-embed-extend method. Bmc Bioinformatics. 22: 257. PMID 34016035 DOI: 10.1186/s12859-021-04162-z   
2021 McKinlay A, Fultz D, Wang F, Pikaard CS. Targeted Enrichment of rRNA Gene Tandem Arrays for Ultra-Long Sequencing by Selective Restriction Endonuclease Digestion. Frontiers in Plant Science. 12: 656049. PMID 33995452 DOI: 10.3389/fpls.2021.656049   
2021 Deng Z, Wang J, Zhang W, Geng Y, Zhao M, Gu C, Fu L, He M, Xiao Q, Xiao W, He L, Yang Q, Han J, Yan X, Yu Z. The Insights of Genomic Synteny and Codon Usage Preference on Genera Demarcation of Family. Frontiers in Microbiology. 12: 657887. PMID 33868215 DOI: 10.3389/fmicb.2021.657887   
2021 Brierley L, Fowler A. Predicting the animal hosts of coronaviruses from compositional biases of spike protein and whole genome sequences through machine learning. Plos Pathogens. 17: e1009149. PMID 33878118 DOI: 10.1371/journal.ppat.1009149   
2021 Li XD, Pan H, Lu XJ, Wei XY, Shi M, Lu P. Complete chloroplast genome sequencing of Job's tears ( L.): genome structure, comparative analysis, and phylogenetic relationships. Mitochondrial Dna. Part B, Resources. 6: 1399-1405. PMID 33948493 DOI: 10.1080/23802359.2021.1911704   
2021 Miao S, Luo Y, Bautista MAC, Chen T. Complete plastid genome characterization and phylogenetic analysis of Wallich ex Wight (Gentianales: Apocynaceae) from Guangdong, China. Mitochondrial Dna. Part B, Resources. 6: 858-859. PMID 33796657 DOI: 10.1080/23802359.2021.1885319   
2021 Misztal I, Aguilar I, Lourenco D, Ma L, Steibel J, Toro M. Emerging issues in genomic selection. Journal of Animal Science. PMID 33773494 DOI: 10.1093/jas/skab092   
2021 Igori D, Lim S, Cho HS, Kim HS, Park JM, Lee HJ, Kwon SY, Moon JS. Complete genome sequence of platycodon closterovirus 1, a novel putative member of the genus Closterovirus. Archives of Virology. PMID 33950290 DOI: 10.1007/s00705-021-05081-3   
2021 Hong J, Gao R, Yang Y. CrepHAN: Cross-species prediction of enhancers by using hierarchical attention networks. Bioinformatics (Oxford, England). PMID 33978703 DOI: 10.1093/bioinformatics/btab349   
2021 Wahlster L, Verboon JM, Ludwig LS, Black SC, Luo W, Garg K, Voit RA, Collins RL, Garimella K, Costello M, Chao KR, Goodrich JK, DiTroia SP, O'Donnell-Luria A, Talkowski ME, et al. Familial thrombocytopenia due to a complex structural variant resulting in a WAC-ANKRD26 fusion transcript. The Journal of Experimental Medicine. 218. PMID 33857290 DOI: 10.1084/jem.20210444   
2021 Fehrer J, Slavíková R, Paštová L, Josefiová J, Mráz P, Chrtek J, Bertrand YJK. Molecular Evolution and Organization of Ribosomal DNA in the Hawkweed Tribe Hieraciinae (Cichorieae, Asteraceae). Frontiers in Plant Science. 12: 647375. PMID 33777082 DOI: 10.3389/fpls.2021.647375   
2021 Wei X, Li X, Chen T, Chen Z, Jin Y, Malik K, Li C. Complete chloroplast genomes of Achnatherum inebrians and comparative analyses with related species from Poaceae. Febs Open Bio. PMID 33932143 DOI: 10.1002/2211-5463.13170   
2021 Brancaccio RN, Robitaille A, Dutta S, Rollison DE, Tommasino M, Gheit T. MinION nanopore sequencing and assembly of a complete human papillomavirus genome. Journal of Virological Methods. 294: 114180. PMID 33965458 DOI: 10.1016/j.jviromet.2021.114180   
2021 Tian P, Xiao J, Jia Z, Guo F, Wang X, Wang W, Wang J, Huang D, Niu W. Complete mitochondrial DNA sequence of the (Scleractinia, Psammocoridae): mitogenome characterisation and phylogenetic implications. Biodiversity Data Journal. 9: e62395. PMID 33911915 DOI: 10.3897/BDJ.9.e62395   
2021 Reynolds KA, Rosa-Molinar E, Ward RE, Zhang H, Urbanowicz BR, Settles AM. Accelerating biological insight for understudied genes. Integrative and Comparative Biology. PMID 33970251 DOI: 10.1093/icb/icab029   
2021 Calvelage S, Freuling CM, Fooks AR, Höper D, Marston DA, McElhinney L, Rasmussen TB, Finke S, Beer M, Müller T. Full-Genome Sequences and Phylogenetic Analysis of Archived Danish European Bat Lyssavirus 1 (EBLV-1) Emphasize a Higher Genetic Resolution and Spatial Segregation for Sublineage 1a. Viruses. 13. PMID 33917139 DOI: 10.3390/v13040634   
2021 O'Sullivan DM, Doyle RM, Temisak S, Redshaw N, Whale AS, Logan G, Huang J, Fischer N, Amos GCA, Preston MD, Marchesi JR, Wagner J, Parkhill J, Motro Y, Denise H, et al. An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities. Scientific Reports. 11: 10590. PMID 34012005 DOI: 10.1038/s41598-021-89881-2   
2021 Bhattacharyya T, Sowdhamini R. Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes. Cellular Signalling. 110009. PMID 33848580 DOI: 10.1016/j.cellsig.2021.110009   
2021 Morales-Briones DF, Gehrke B, Huang CH, Liston A, Ma H, Marx HE, Tank DC, Yang Y. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology. PMID 33978764 DOI: 10.1093/sysbio/syab032   
2021 Chase MA, Ellegren H, Mugal CF. Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs. Evolution; International Journal of Organic Evolution. PMID 33851440 DOI: 10.1111/evo.14234   
2021 Park BK, Ghimire B, Ha YH, Son DC, Kim DK. Complete chloroplast genome of (Ranunculaceae), an endemic species from South Korea. Mitochondrial Dna. Part B, Resources. 6: 1496-1497. PMID 33969206 DOI: 10.1080/23802359.2021.1910080   
2021 Cheng J, Siejka-Zielińska P, Liu Y, Chandran A, Kriaucionis S, Song CX. Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection. Nucleic Acids Research. PMID 33905495 DOI: 10.1093/nar/gkab291   
2021 Shah RN, Ruthenburg AJ. Sequence deeper without sequencing more: Bayesian resolution of ambiguously mapped reads. Plos Computational Biology. 17: e1008926. PMID 33872311 DOI: 10.1371/journal.pcbi.1008926