Christopher W.V. Hogue - Publications

Affiliations: 
1997-2008 Biochemistry University of Toronto, Toronto, ON, Canada 
 2007-2013 Biol. Sciences National University of Singapore, Singapore, Singapore 
Website:
http://bioimplement.blogspot.com/

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Mohanty S, Jobichen C, Chichili VP, Velázquez-Campoy A, Low BC, Hogue CW, Sivaraman J. Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans. The Journal of Biological Chemistry. 290: 27280-96. PMID 26370083 DOI: 10.1074/jbc.M115.677492  1
2014 Zhao C, Liu C, Hogue CW, Low BC. A cooperative jack model of random coil-to-elongation transition of the FH1 domain by profilin binding explains formin motor behavior in actin polymerization. Febs Letters. 588: 2288-93. PMID 24861497 DOI: 10.1016/j.febslet.2014.05.016  1
2014 Hotta K, Ranganathan S, Liu R, Wu F, Machiyama H, Gao R, Hirata H, Soni N, Ohe T, Hogue CW, Madhusudhan MS, Sawada Y. Biophysical properties of intrinsically disordered p130Cas substrate domain--implication in mechanosensing. Plos Computational Biology. 10: e1003532. PMID 24722239 DOI: 10.1371/journal.pcbi.1003532  1
2012 Joughin BA, Liu C, Lauffenburger DA, Hogue CW, Yaffe MB. Protein kinases display minimal interpositional dependence on substrate sequence: potential implications for the evolution of signalling networks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 2574-83. PMID 22889908 DOI: 10.1098/rstb.2012.0010  1
2011 Liu C, Yao M, Hogue CW. Near-membrane ensemble elongation in the proline-rich LRP6 intracellular domain may explain the mysterious initiation of the Wnt signaling pathway. Bmc Bioinformatics. 12: S13. PMID 22372892 DOI: 10.1186/1471-2105-12-S13-S13  1
2007 Betel D, Breitkreuz KE, Isserlin R, Dewar-Darch D, Tyers M, Hogue CW. Structure-templated predictions of novel protein interactions from sequence information. Plos Computational Biology. 3: 1783-9. PMID 17892321 DOI: 10.1371/journal.pcbi.0030182  1
2007 Hogue CW. The other side of staying out of a BIND. Nature Biotechnology. 25: 971. PMID 17846617 DOI: 10.1038/nbt0907-971a  0.01
2006 Willis RC, Hogue CW. Searching, viewing, and visualizing data in the Biomolecular Interaction Network Database (BIND). Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.9. PMID 18428770 DOI: 10.1002/0471250953.bi0809s12  0.01
2006 Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW. Domain-based small molecule binding site annotation. Bmc Bioinformatics. 7: 152. PMID 16545112 DOI: 10.1186/1471-2105-7-152  1
2006 Feldman HJ, Snyder KA, Ticoll A, Pintilie G, Hogue CW. A complete small molecule dataset from the protein data bank. Febs Letters. 580: 1649-53. PMID 16494871 DOI: 10.1016/j.febslet.2006.02.003  1
2005 Feldman HJ, Dumontier M, Ling S, Haider N, Hogue CW. CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules. Febs Letters. 579: 4685-91. PMID 16098521 DOI: 10.1016/j.febslet.2005.07.039  1
2005 Dumontier M, Yao R, Feldman HJ, Hogue CW. Armadillo: domain boundary prediction by amino acid composition. Journal of Molecular Biology. 350: 1061-73. PMID 15978619 DOI: 10.1016/j.jmb.2005.05.037  1
2005 Portet S, Tuszy?ski JA, Hogue CW, Dixon JM. Elastic vibrations in seamless microtubules. European Biophysics Journal : Ebj. 34: 912-20. PMID 15886985 DOI: 10.1007/s00249-005-0461-4  1
2005 Alex AT, Dumontier M, Rose JS, Hogue CW. Hardware-accelerated protein identification for mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 19: 833-7. PMID 15723443 DOI: 10.1002/rcm.1853  1
2005 Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, ... ... Hogue CW, et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Research. 33: D418-24. PMID 15608229 DOI: 10.1093/nar/gki051  1
2004 Portet S, Vassy J, Hogue CW, Arino J, Arino O. Intermediate filament networks: in vitro and in vivo assembly models. Comptes Rendus Biologies. 327: 970-6. PMID 15628219 DOI: 10.1016/j.crvi.2004.06.005  1
2004 Betel D, Isserlin R, Hogue CW. Analysis of domain correlations in yeast protein complexes. Bioinformatics (Oxford, England). 20: i55-62. PMID 15262781 DOI: 10.1093/bioinformatics/bth903  1
2003 Acchione M, Guillemette JG, Twine SM, Hogue CW, Rajendran B, Szabo AG. Fluorescence based structural analysis of tryptophan analogue-AMP formation in single tryptophan mutants of Bacillus stearothermophilus tryptophanyl-tRNA synthetase. Biochemistry. 42: 14994-5002. PMID 14674776 DOI: 10.1021/bi0347454  1
2003 Donaldson I, Martin J, de Bruijn B, Wolting C, Lay V, Tuekam B, Zhang S, Baskin B, Bader GD, Michalickova K, Pawson T, Hogue CW. PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine. Bmc Bioinformatics. 4: 11. PMID 12689350  1
2003 Bader GD, Hogue CW. An automated method for finding molecular complexes in large protein interaction networks. Bmc Bioinformatics. 4: 2. PMID 12525261  1
2003 Bader GD, Betel D, Hogue CW. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Research. 31: 248-50. PMID 12519993  1
2002 Dumontier M, Michalickova K, Hogue CW. Species-specific protein sequence and fold optimizations. Bmc Bioinformatics. 3: 39. PMID 12487631  1
2002 Michalickova K, Bader GD, Dumontier M, Lieu H, Betel D, Isserlin R, Hogue CW. SeqHound: biological sequence and structure database as a platform for bioinformatics research. Bmc Bioinformatics. 3: 32. PMID 12401134  1
2002 Bader GD, Hogue CW. Analyzing yeast protein-protein interaction data obtained from different sources. Nature Biotechnology. 20: 991-7. PMID 12355115 DOI: 10.1038/nbt1002-991  1
2002 Betel D, Hogue CW. Kangaroo--a pattern-matching program for biological sequences. Bmc Bioinformatics. 3: 20. PMID 12150718  1
2002 Dumontier M, Hogue CW. NBLAST: a cluster variant of BLAST for NxN comparisons. Bmc Bioinformatics. 3: 13. PMID 12019022  1
2002 Park J, Betel D, Gryfe R, Michalickova K, Di Nicola N, Gallinger S, Hogue CW, Redston M. Mutation profiling of mismatch repair-deficient colorectal cncers using an in silico genome scan to identify coding microsatellites. Cancer Research. 62: 1284-8. PMID 11888892  1
2002 Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, ... ... Hogue CW, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 415: 180-3. PMID 11805837 DOI: 10.1038/415180a  1
2002 Feldman HJ, Hogue CW. Probabilistic sampling of protein conformations: new hope for brute force? Proteins. 46: 8-23. PMID 11746699 DOI: 10.1002/prot.1163  1
2002 Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, et al. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science (New York, N.Y.). 295: 321-4. PMID 11743162 DOI: 10.1126/science.1064987  1
2001 Salama JJ, Donaldson I, Hogue CW. Automatic annotation of BIND molecular interactions from three-dimensional structures. Biopolymers. 61: 111-20. PMID 11987160 DOI: 10.1002/1097-0282(2001/2002)61:2<111::AID-BIP10143>3.0.CO;2-8  1
2001 Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Pagé N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, Andrews B, Tyers M, Boone C. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science (New York, N.Y.). 294: 2364-8. PMID 11743205 DOI: 10.1126/science.1065810  1
2001 Salama JJ, Feldman HJ, Hogue CW. VISTRAJ: exploring protein conformational space. Bioinformatics (Oxford, England). 17: 851-2. PMID 11590106  1
2001 Bader GD, Donaldson I, Wolting C, Ouellette BF, Pawson T, Hogue CW. BIND--The Biomolecular Interaction Network Database. Nucleic Acids Research. 29: 242-5. PMID 11125103  1
2000 Bader GD, Hogue CW. BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics (Oxford, England). 16: 465-77. PMID 10871269  1
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