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Peter G. Wolynes - Publications

Affiliations: 
1976-1980 Harvard University, Cambridge, MA, United States 
 1980-2000 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
 2000-2011 University of California, San Diego, La Jolla, CA 
 2011- Rice University, Houston, TX 
Area:
protein folding, regulatory networks, glasses, many-body phenomena
Website:
http://chemistry.rice.edu/FacultyDetail.aspx?p=ACC7DC090095C11C
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Year Citation  Score
2024 Lu W, Zhang J, Huang W, Zhang Z, Jia X, Wang Z, Shi L, Li C, Wolynes PG, Zheng S. DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model. Nature Communications. 15: 1071. PMID 38316797 DOI: 10.1038/s41467-024-45461-2  0.354
2023 Freiberger MI, Ruiz-Serra V, Pontes C, Romero-Durana M, Galaz-Davison P, Ramírez-Sarmiento CA, Schuster CD, Marti MA, Wolynes PG, Ferreiro DU, Parra RG, Valencia A. Local energetic frustration conservation in protein families and superfamilies. Nature Communications. 14: 8379. PMID 38104123 DOI: 10.1038/s41467-023-43801-2  0.657
2023 Chen X, Jin S, Chen M, Bueno C, Wolynes PG. The marionette mechanism of domain-domain communication in the antagonist, agonist, and coactivator responses of the estrogen receptor. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216906120. PMID 36730193 DOI: 10.1073/pnas.2216906120  0.703
2023 Contessoto VG, Dudchenko O, Aiden EL, Wolynes PG, Onuchic JN, Di Pierro M. Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nature Communications. 14: 326. PMID 36658127 DOI: 10.1038/s41467-023-35909-2  0.435
2022 Sanches MN, Parra RG, Viegas RG, Oliveira AB, Wolynes PG, Ferreiro DU, Leite VBP. Resolving the fine structure in the energy landscapes of repeat proteins. Qrb Discovery. 3: e7. PMID 37529289 DOI: 10.1017/qrd.2022.4  0.72
2022 Chen Y, Jin S, Zhang M, Hu Y, Wu KL, Chung A, Wang S, Tian Z, Wang Y, Wolynes PG, Xiao H. Unleashing the potential of noncanonical amino acid biosynthesis to create cells with precision tyrosine sulfation. Nature Communications. 13: 5434. PMID 36114189 DOI: 10.1038/s41467-022-33111-4  0.693
2022 Jin S, Bueno C, Lu W, Wang Q, Chen M, Chen X, Wolynes PG, Gao Y. Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA. Proceedings of the National Academy of Sciences of the United States of America. 119: e2202239119. PMID 35914145 DOI: 10.1073/pnas.2202239119  0.719
2022 Chen X, Tsai MY, Wolynes PG. The Role of Charge Density Coupled DNA Bending in Transcription Factor Sequence Binding Specificity: A Generic Mechanism for Indirect Readout. Journal of the American Chemical Society. PMID 35061392 DOI: 10.1021/jacs.1c11911  0.717
2022 Chen X, Lu W, Tsai MY, Jin S, Wolynes PG. Exploring the folding energy landscapes of heme proteins using a hybrid AWSEM-heme model. Journal of Biological Physics. PMID 35000062 DOI: 10.1007/s10867-021-09596-3  0.824
2022 Sanches MN, Knapp K, Oliveira AB, Wolynes PG, Onuchic JN, Leite VBP. Examining the Ensembles of Amyloid-β Monomer Variants and Their Propensities to Form Fibers Using an Energy Landscape Visualization Method. The Journal of Physical Chemistry. B. 126: 93-99. PMID 34968059 DOI: 10.1021/acs.jpcb.1c08525  0.45
2022 Guzovsky AB, Schafer NP, Wolynes PG, Ferreiro DU. Localization of Energetic Frustration in Proteins. Methods in Molecular Biology (Clifton, N.J.). 2376: 387-398. PMID 34845622 DOI: 10.1007/978-1-0716-1716-8_22  0.685
2021 Xu Y, Knapp K, Le KN, Schafer NP, Safari MS, Davtyan A, Wolynes PG, Vekilov PG. Frustrated peptide chains at the fibril tip control the kinetics of growth of amyloid-β fibrils. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34518234 DOI: 10.1073/pnas.2110995118  0.627
2021 Ediger MD, Gruebele M, Lubchenko V, Wolynes PG. Glass Dynamics Deep in the Energy Landscape. The Journal of Physical Chemistry. B. PMID 34357766 DOI: 10.1021/acs.jpcb.1c01739  0.665
2021 Rausch AO, Freiberger MI, Leonetti CO, Luna DM, Radusky LG, Wolynes PG, Ferreiro DU, Gonzalo Parra R. FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations. Bioinformatics (Oxford, England). PMID 33720293 DOI: 10.1093/bioinformatics/btab176  0.702
2021 Freiberger MI, Wolynes PG, Ferreiro DU, Fuxreiter M. Frustration in Fuzzy Protein Complexes Leads to Interaction Versatility. The Journal of Physical Chemistry. B. 125: 2513-2520. PMID 33667107 DOI: 10.1021/acs.jpcb.0c11068  0.676
2021 Lu W, Bueno C, Schafer NP, Moller J, Jin S, Chen X, Chen M, Gu X, Davtyan A, de Pablo JJ, Wolynes PG. OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations. Plos Computational Biology. 17: e1008308. PMID 33577557 DOI: 10.1371/journal.pcbi.1008308  0.821
2021 Gianni S, Freiberger MI, Jemth P, Ferreiro DU, Wolynes PG, Fuxreiter M. Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly. Accounts of Chemical Research. PMID 33550810 DOI: 10.1021/acs.accounts.0c00813  0.7
2021 Shen JL, Tsai MY, Schafer NP, Wolynes PG. Modeling Protein Aggregation Kinetics: The Method of Second Stochasticization. The Journal of Physical Chemistry. B. PMID 33476161 DOI: 10.1021/acs.jpcb.0c10331  0.73
2020 Chen M, Chen X, Schafer NP, Clementi C, Komives EA, Ferreiro DU, Wolynes PG. Surveying biomolecular frustration at atomic resolution. Nature Communications. 11: 5944. PMID 33230150 DOI: 10.1038/s41467-020-19560-9  0.667
2020 Jin S, Miller MD, Chen M, Schafer NP, Lin X, Chen X, Phillips GN, Wolynes PG. Molecular-replacement phasing using predicted protein structures from . Iucrj. 7: 1168-1178. PMID 33209327 DOI: 10.1107/S2052252520013494  0.734
2020 Cheng RR, Contessoto V, Lieberman-Aiden E, Wolynes PG, Di Pierro M, Onuchic JN. Exploring chromosomal structural heterogeneity across multiple cell lines. Elife. 9. PMID 33047670 DOI: 10.7554/eLife.60312  0.481
2020 Contessoto VG, Cheng RR, Hajitaheri A, Dodero-Rojas E, Mello MF, Lieberman-Aiden E, Wolynes PG, Di Pierro M, Onuchic JN. The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. Nucleic Acids Research. PMID 33021634 DOI: 10.1093/nar/gkaa818  0.424
2020 Chen M, Chen X, Jin S, Lu W, Lin X, Wolynes PG. Protein Structure Refinement Guided by Atomic Packing Frustration Analysis. The Journal of Physical Chemistry. B. PMID 32931278 DOI: 10.1021/Acs.Jpcb.0C06719  0.754
2020 Lubchenko V, Wolynes PG. Photon activation of glassy dynamics: A mechanism for photoinduced fluidization, aging, and information storage in amorphous materials. The Journal of Physical Chemistry. B. PMID 32857509 DOI: 10.1021/Acs.Jpcb.0C06515  0.669
2020 Jin S, Chen M, Chen X, Bueno C, Lu W, Schafer NP, Lin X, Onuchic JN, Wolynes PG. Protein Structure Prediction in CASP13 using AWSEM-Suite. Journal of Chemical Theory and Computation. PMID 32396727 DOI: 10.1021/Acs.Jctc.0C00188  0.797
2020 Jin S, Contessoto VG, Chen M, Schafer NP, Lu W, Chen X, Bueno C, Hajitaheri A, Sirovetz BJ, Davtyan A, Papoian GA, Tsai MY, Wolynes PG. AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. Nucleic Acids Research. PMID 32383764 DOI: 10.1093/Nar/Gkaa356  0.812
2020 Chen X, Chen M, Schafer NP, Wolynes PG. Exploring the interplay between fibrillization and amorphous aggregation channels on the energy landscapes of tau repeat isoforms. Proceedings of the National Academy of Sciences of the United States of America. PMID 32029593 DOI: 10.1073/Pnas.1921702117  0.324
2020 Tsai M, Zheng W, Chen M, Wolynes PG. In Silico Studies on Functional Significance of Multiple Binding Configurations of Bacterial Nucleoid Associated Protein-DNA Assemblies Biophysical Journal. 118: 75a-76a. DOI: 10.1016/J.Bpj.2019.11.586  0.735
2019 Krepel D, Davtyan A, Schafer NP, Wolynes PG, Onuchic JN. Braiding topology and the energy landscape of chromosome organization proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 31888987 DOI: 10.1073/Pnas.1917750117  0.744
2019 Tsai MY, Zheng W, Chen M, Wolynes PG. Multiple Binding Configurations of Fis Protein Pairs on DNA: Facilitated Dissociation versus Cooperative Dissociation. Journal of the American Chemical Society. PMID 31566963 DOI: 10.1021/Jacs.9B08287  0.76
2019 Chen J, Schafer NP, Wolynes PG, Clementi C. Localizing Frustration in Proteins Using All-Atom Energy Functions. The Journal of Physical Chemistry. B. PMID 31063375 DOI: 10.1021/Acs.Jpcb.9B01545  0.429
2019 Lin X, Schafer NP, Lu W, Jin S, Chen X, Chen M, Onuchic JN, Wolynes PG. Forging tools for refining predicted protein structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 31000596 DOI: 10.1073/Pnas.1900778116  0.789
2019 Lin X, Kulkarni P, Bocci F, Schafer NP, Roy S, Tsai MY, He Y, Chen Y, Rajagopalan K, Mooney SM, Zeng Y, Weninger K, Grishaev A, Onuchic JN, Levine H, ... Wolynes PG, et al. Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. Biomolecules. 9. PMID 30813315 DOI: 10.3390/biom9020077  0.787
2019 Freiberger MI, Guzovsky AB, Wolynes PG, Parra RG, Ferreiro DU. Local frustration around enzyme active sites. Proceedings of the National Academy of Sciences of the United States of America. PMID 30765513 DOI: 10.1073/Pnas.1819859116  0.712
2019 Wang J, Onuchic J, Wolynes P. Statistics of kinetic pathways on biased rough energy landscapes with applications to protein folding. Physical Review Letters. 76: 4861-4864. PMID 10061399 DOI: 10.1103/Physrevlett.76.4861  0.579
2019 Kirkpatrick TR, Thirumalai D, Wolynes PG. Scaling concepts for the dynamics of viscous liquids near an ideal glassy state. Physical Review. a, General Physics. 40: 1045-1054. PMID 9902230 DOI: 10.1103/Physreva.40.1045  0.496
2018 Lu W, Schafer NP, Wolynes PG. Energy landscape underlying spontaneous insertion and folding of an alpha-helical transmembrane protein into a bilayer. Nature Communications. 9: 4949. PMID 30470737 DOI: 10.1038/S41467-018-07320-9  0.416
2018 Chen M, Lin X, Lu W, Schafer NP, Onuchic JN, Wolynes PG. Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force Fields. Journal of Chemical Theory and Computation. PMID 30240202 DOI: 10.1021/Acs.Jctc.8B00683  0.591
2018 Chen M, Schafer NP, Wolynes PG. Surveying the Energy Landscapes of Αβ Fibril Polymorphism. The Journal of Physical Chemistry. B. PMID 30215519 DOI: 10.1021/Acs.Jpcb.8B07364  0.366
2018 Wu H, Wolynes PG, Papoian GA. AWSEM-IDP: A Coarse-Grained Force Field for Intrinsically Disordered Proteins. The Journal of Physical Chemistry. B. PMID 30091924 DOI: 10.1021/Acs.Jpcb.8B05791  0.68
2018 Di Pierro M, Potoyan DA, Wolynes PG, Onuchic JN. Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29987017 DOI: 10.1073/Pnas.1806297115  0.745
2018 Wang Z, Potoyan DA, Wolynes PG. Modeling the therapeutic efficacy of NFκB synthetic decoy oligodeoxynucleotides (ODNs). Bmc Systems Biology. 12: 4. PMID 29382384 DOI: 10.1186/S12918-018-0525-6  0.696
2018 Wang Z, Potoyan DA, Wolynes PG. Stochastic resonances in a distributed genetic broadcasting system: the NFκB/IκB paradigm. Journal of the Royal Society, Interface. 15. PMID 29343631 DOI: 10.1098/Rsif.2017.0809  0.717
2018 Bueno CA, Potoyan DA, Cheng RR, Wolynes PG. Prediction of Changes in Protein Folding Stability Upon Single Residue Mutations Biophysical Journal. 114: 199a. DOI: 10.1016/J.Bpj.2017.11.1114  0.34
2017 Potoyan DA, Wolynes PG. Stochastic dynamics of genetic broadcasting networks. Physical Review. E. 96: 052305. PMID 29347696 DOI: 10.1016/J.Bpj.2016.11.3080  0.683
2017 Chen M, Schafer NP, Zheng W, Wolynes PG. The AWSEM-Amylometer: predicting amyloid propensity and fibril topology using an optimized folding landscape model. Acs Chemical Neuroscience. PMID 29241326 DOI: 10.1021/Acschemneuro.7B00436  0.395
2017 Lubchenko V, Wolynes PG. Aging, Jamming, and the Limits of Stability of Amorphous Solids. The Journal of Physical Chemistry. B. PMID 29216433 DOI: 10.1021/Acs.Jpcb.7B09553  0.691
2017 Potoyan DA, Bueno C, Zheng W, Komives EA, Wolynes PG. Resolving the NFκB Heterodimer Binding Paradox: Strain and Frustration Guide the Binding of Dimeric Transcription Factors. Journal of the American Chemical Society. PMID 29183131 DOI: 10.1021/Jacs.7B08741  0.71
2017 Ferreiro DU, Komives EA, Wolynes PG. Frustration, function and folding. Current Opinion in Structural Biology. 48: 68-73. PMID 29101782 DOI: 10.1016/J.Sbi.2017.09.006  0.686
2017 Di Pierro M, Cheng RR, Lieberman Aiden E, Wolynes PG, Onuchic JN. De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087948 DOI: 10.1016/J.Bpj.2017.11.3265  0.51
2017 Eaton WA, Wolynes PG. Theory, simulations, and experiments show that proteins fold by multiple pathways. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087352 DOI: 10.1073/Pnas.1716444114  0.414
2017 Zheng W, Tsai MY, Wolynes PG. Comparing the Aggregation Free Energy Landscapes of Amyloid Beta(1-42) and Amyloid Beta(1-40). Journal of the American Chemical Society. PMID 29057654 DOI: 10.1021/Jacs.7B08089  0.75
2017 Sirovetz BJ, Schafer NP, Wolynes PG. Protein Structure Prediction: Making AWSEM AWSEM-ER by Adding Evolutionary Restraints. Proteins. PMID 28799172 DOI: 10.1002/Prot.25367  0.461
2017 Chen M, Wolynes PG. Aggregation landscapes of Huntingtin exon 1 protein fragments and the critical repeat length for the onset of Huntington's disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 28400517 DOI: 10.1073/Pnas.1702237114  0.359
2016 Chen M, Lin X, Lu W, Onuchic JN, Wolynes PG. Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins. The Journal of Physical Chemistry. B. PMID 27797194 DOI: 10.1021/Acs.Jpcb.6B09347  0.599
2016 Chen M, Tsai M, Zheng W, Wolynes PG. The Aggregation Free Energy Landscapes of Polyglutamine Repeats. Journal of the American Chemical Society. PMID 27786478 DOI: 10.1021/Jacs.6B08665  0.74
2016 Zheng W, Tsai MY, Chen M, Wolynes PG. Exploring the aggregation free energy landscape of the amyloid-β protein (1-40). Proceedings of the National Academy of Sciences of the United States of America. PMID 27698130 DOI: 10.1073/Pnas.1612362113  0.765
2016 Zhang B, Wolynes PG. Genomic Energy Landscapes. Biophysical Journal. PMID 27692923 DOI: 10.1016/J.Bpj.2016.08.046  0.411
2016 Di Pierro M, Zhang B, Aiden EL, Wolynes PG, Onuchic JN. Transferable model for chromosome architecture. Proceedings of the National Academy of Sciences of the United States of America. PMID 27688758 DOI: 10.1073/Pnas.1613607113  0.562
2016 Tsai M, Zhang B, Zheng W, Wolynes PG. The Molecular Mechanism of Facilitated Dissociation of Fis Protein from DNA. Journal of the American Chemical Society. PMID 27685351 DOI: 10.1021/Jacs.6B08416  0.768
2016 Wang Z, Potoyan DA, Wolynes PG. Molecular stripping, targets and decoys as modulators of oscillations in the NF-κB/IκBα/DNA genetic network. Journal of the Royal Society, Interface. 13. PMID 27683001 DOI: 10.1098/Rsif.2016.0606  0.713
2016 Zhang B, Wolynes PG. Shape Transitions and Chiral Symmetry Breaking in the Energy Landscape of the Mitotic Chromosome. Physical Review Letters. 116: 248101. PMID 27367409 DOI: 10.1103/Physrevlett.116.248101  0.41
2016 Zhang B, Zheng W, Papoian GA, Wolynes PG. Exploring the Free Energy Landscape of Nucleosomes. Journal of the American Chemical Society. PMID 27300314 DOI: 10.1021/Jacs.6B02893  0.666
2016 Chen M, Lin X, Zheng W, Onuchic JN, Wolynes PG. Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model (AAWSEM). The Journal of Physical Chemistry. B. PMID 27148634 DOI: 10.1021/Acs.Jpcb.6B02451  0.581
2016 Parra RG, Schafer NP, Radusky LG, Tsai MY, Guzovsky AB, Wolynes PG, Ferreiro DU. Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics. Nucleic Acids Research. PMID 27131359 DOI: 10.1093/Nar/Gkw304  0.829
2016 Wolynes P. BIOMOLECULAR FOLDING. Moments of excitement. Science (New York, N.Y.). 352: 150-1. PMID 27124442 DOI: 10.1126/Science.Aaf6626  0.392
2016 Potoyan DA, Zheng W, Ferreiro DU, Wolynes PG, Komives EA. PEST Control of Molecular Stripping of NFκB from DNA Transcription Sites. The Journal of Physical Chemistry. B. PMID 27098223 DOI: 10.1021/Acs.Jpcb.6B02359  0.783
2016 Chen M, Zheng W, Wolynes PG. Energy landscapes of a mechanical prion and their implications for the molecular mechanism of long-term memory. Proceedings of the National Academy of Sciences of the United States of America. PMID 27091989 DOI: 10.1073/Pnas.1602702113  0.378
2016 Schafer NP, Truong HH, Otzen DE, Lindorff-Larsen K, Wolynes PG. Topological constraints and modular structure in the folding and functional motions of GlpG, an intramembrane protease. Proceedings of the National Academy of Sciences of the United States of America. PMID 26858402 DOI: 10.1073/Pnas.1524027113  0.426
2016 Wang S, Wolynes P. Glassy Dynamics of Passive and Active Network Materials: A Microscopic Theory Biophysical Journal. 110: 617a. DOI: 10.1016/J.Bpj.2015.11.3310  0.304
2015 Truong HH, Kim BL, Schafer NP, Wolynes PG. Predictive energy landscapes for folding membrane protein assemblies. The Journal of Chemical Physics. 143: 243101. PMID 26723586 DOI: 10.1063/1.4929598  0.392
2015 Potoyan DA, Zheng W, Komives EA, Wolynes PG. Molecular stripping in the NF-κB/IκB/DNA genetic regulatory network. Proceedings of the National Academy of Sciences of the United States of America. PMID 26699500 DOI: 10.1073/Pnas.1520483112  0.714
2015 Potoyan DA, Wolynes PG. Dichotomous noise models of gene switches. The Journal of Chemical Physics. 143: 195101. PMID 26590554 DOI: 10.1063/1.4935572  0.682
2015 Tsai MY, Zheng W, Balamurugan D, Schafer NP, Kim BL, Cheung MS, Wolynes PG. Electrostatics, Structure Prediction and the Energy Landscapes for Protein Folding and Binding. Protein Science : a Publication of the Protein Society. PMID 26183799 DOI: 10.1002/Pro.2751  0.785
2015 Sirovetz BJ, Schafer NP, Wolynes PG. Water Mediated Interactions and the Protein Folding Phase Diagram in the Temperature-Pressure Plane. The Journal of Physical Chemistry. B. PMID 26102155 DOI: 10.1021/Acs.Jpcb.5B03828  0.353
2015 Zhang B, Wolynes PG. Topology, structures, and energy landscapes of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 112: 6062-7. PMID 25918364 DOI: 10.1073/Pnas.1506257112  0.389
2015 Zhang B, Wolynes PG. Prediction of Chromosome Conformations with Maximum Entropy Principle Biophysical Journal. 108: 537a. DOI: 10.1016/J.Bpj.2014.11.2947  0.396
2015 Potoyan D, Wolynes P. Path Attractors and the Origins of Stochastic Bifrucation and Dephasing in Genetic Networks Biophysical Journal. 108: 464a. DOI: 10.1016/J.Bpj.2014.11.2531  0.672
2014 Wolynes PG. Evolution, energy landscapes and the paradoxes of protein folding. Biochimie. PMID 25530262 DOI: 10.1016/J.Biochi.2014.12.007  0.475
2014 Schafer NP, Kim BL, Zheng W, Wolynes PG. Learning To Fold Proteins Using Energy Landscape Theory. Israel Journal of Chemistry. 54: 1311-1337. PMID 25308991 DOI: 10.1002/Ijch.201300145  0.453
2014 Ferreiro DU, Komives EA, Wolynes PG. Frustration in biomolecules. Quarterly Reviews of Biophysics. 47: 285-363. PMID 25225856 DOI: 10.1017/S0033583514000092  0.734
2014 Morcos F, Schafer NP, Cheng RR, Onuchic JN, Wolynes PG. Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection. Proceedings of the National Academy of Sciences of the United States of America. 111: 12408-13. PMID 25114242 DOI: 10.1073/Pnas.1413575111  0.592
2014 Kim BL, Schafer NP, Wolynes PG. Predictive energy landscapes for folding α-helical transmembrane proteins. Proceedings of the National Academy of Sciences of the United States of America. 111: 11031-6. PMID 25030446 DOI: 10.1073/Pnas.1410529111  0.435
2014 Zhang B, Wolynes PG. Stem cell differentiation as a many-body problem. Proceedings of the National Academy of Sciences of the United States of America. 111: 10185-90. PMID 24946805 DOI: 10.1073/Pnas.1408561111  0.35
2014 Wisitsorasak A, Wolynes PG. Dynamical heterogeneity of the glassy state. The Journal of Physical Chemistry. B. 118: 7835-47. PMID 24811573 DOI: 10.1021/Jp4125777  0.37
2014 Nussinov R, Wolynes PG. A second molecular biology revolution? The energy landscapes of biomolecular function. Physical Chemistry Chemical Physics : Pccp. 16: 6321-2. PMID 24608340 DOI: 10.1039/C4Cp90027H  0.332
2014 Potoyan DA, Wolynes PG. On the dephasing of genetic oscillators. Proceedings of the National Academy of Sciences of the United States of America. 111: 2391-6. PMID 24469814 DOI: 10.1073/Pnas.1323433111  0.68
2013 Wang S, Wolynes PG. Active patterning and asymmetric transport in a model actomyosin network. The Journal of Chemical Physics. 139: 235103. PMID 24359394 DOI: 10.1063/1.4848657  0.31
2013 Zheng W, Schafer NP, Wolynes PG. Free energy landscapes for initiation and branching of protein aggregation. Proceedings of the National Academy of Sciences of the United States of America. 110: 20515-20. PMID 24284165 DOI: 10.1073/Pnas.1320483110  0.445
2013 Rabochiy P, Wolynes PG, Lubchenko V. Microscopically based calculations of the free energy barrier and dynamic length scale in supercooled liquids: the comparative role of configurational entropy and elasticity. The Journal of Physical Chemistry. B. 117: 15204-19. PMID 24195747 DOI: 10.1021/Jp409502K  0.689
2013 Tsytlonok M, Craig PO, Sivertsson E, Serquera D, Perrett S, Best RB, Wolynes PG, Itzhaki LS. Complex energy landscape of a giant repeat protein. Structure (London, England : 1993). 21: 1954-65. PMID 24120762 DOI: 10.1016/J.Str.2013.08.028  0.437
2013 Truong HH, Kim BL, Schafer NP, Wolynes PG. Funneling and frustration in the energy landscapes of some designed and simplified proteins. The Journal of Chemical Physics. 139: 121908. PMID 24089720 DOI: 10.1063/1.4813504  0.451
2013 Wang S, Wolynes PG. Microscopic theory of the glassy dynamics of passive and active network materials. The Journal of Chemical Physics. 138: 12A521. PMID 23556772 DOI: 10.1063/1.4773349  0.318
2013 Zheng W, Schafer NP, Wolynes PG. Frustration in the energy landscapes of multidomain protein misfolding. Proceedings of the National Academy of Sciences of the United States of America. 110: 1680-5. PMID 23319605 DOI: 10.1073/Pnas.1222130110  0.437
2013 Schafer NP, Hoffman RMB, Burger A, Craig PO, Komives EA, Wolynes PG. Correction: Discrete kinetic models from funneled energy landscape simulations (PLoS ONE) Plos One. 8. DOI: 10.1371/Annotation/16C11A12-4245-403C-80Ab-E6662Baf16Cd  0.553
2012 Schafer NP, Hoffman RM, Burger A, Craig PO, Komives EA, Wolynes PG. Discrete kinetic models from funneled energy landscape simulations. Plos One. 7: e50635. PMID 23251375 DOI: 10.1371/Journal.Pone.0050635  0.681
2012 Burger A, Walczak AM, Wolynes PG. Influence of decoys on the noise and dynamics of gene expression. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 041920. PMID 23214628 DOI: 10.1103/Physreve.86.041920  0.58
2012 Zheng W, Schafer NP, Davtyan A, Papoian GA, Wolynes PG. Predictive energy landscapes for protein-protein association. Proceedings of the National Academy of Sciences of the United States of America. 109: 19244-9. PMID 23129648 DOI: 10.1073/Pnas.1216215109  0.804
2012 Wolynes PG, Eaton WA, Fersht AR. Chemical physics of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 109: 17770-1. PMID 23112193 DOI: 10.1073/Pnas.1215733109  0.406
2012 Jenik M, Parra RG, Radusky LG, Turjanski A, Wolynes PG, Ferreiro DU. Protein frustratometer: a tool to localize energetic frustration in protein molecules. Nucleic Acids Research. 40: W348-51. PMID 22645321 DOI: 10.1093/Nar/Gks447  0.731
2012 Davtyan A, Schafer NP, Zheng W, Clementi C, Wolynes PG, Papoian GA. AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing. The Journal of Physical Chemistry. B. 116: 8494-503. PMID 22545654 DOI: 10.1021/Jp212541Y  0.779
2012 Lammert H, Wolynes PG, Onuchic JN. The role of atomic level steric effects and attractive forces in protein folding. Proteins. 80: 362-73. PMID 22081451 DOI: 10.1002/Prot.23187  0.579
2012 Boechi L, Oklejas V, Wolynes PG. Membrane Protein Folding: Mechanistic and Kinetic Implications Biophysical Journal. 102: 59a. DOI: 10.1016/J.Bpj.2011.11.351  0.408
2012 Davtyan A, Zheng W, Schafer N, Wolynes P, Papoian G. AWSEM-MD: Coarse-Grained Protein Structure Prediction using Physical Potentials and Bioinformatically Based Local Structure Biasing Biophysical Journal. 102: 619a. DOI: 10.1016/J.Bpj.2011.11.3373  0.8
2012 Hoffman RM, Berger A, Craig PO, Komives EA, Schafer NP, Wolynes PG. Predicting Folding Rates from Umbrella Sampled Data Biophysical Journal. 102: 457a. DOI: 10.1016/J.Bpj.2011.11.2507  0.359
2012 Craig PO, Hoffman RM, Lätzer J, Weinkam P, Komives EA, Wolynes PG. Analysis of Native H/D Exchange Dynamics in EX1/EX2 Conditions using Structure Based Model Simulations Biophysical Journal. 102: 448a. DOI: 10.1016/J.Bpj.2011.11.2459  0.811
2012 Lubchenko V, Wolynes PG. Theories of Structural Glass Dynamics: Mosaics, Jamming, and All That Structural Glasses and Supercooled Liquids: Theory, Experiment, and Applications. 341-379. DOI: 10.1002/9781118202470.ch10  0.637
2012 Wolynes PG, Lubchenko V. Structural Glasses and Supercooled Liquids: Theory, Experiment, and Applications Structural Glasses and Supercooled Liquids: Theory, Experiment, and Applications. DOI: 10.1002/9781118202470  0.617
2011 Craig PO, Lätzer J, Weinkam P, Hoffman RM, Ferreiro DU, Komives EA, Wolynes PG. Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes. Journal of the American Chemical Society. 133: 17463-72. PMID 21913704 DOI: 10.1021/Ja207506Z  0.822
2011 Li W, Wolynes PG, Takada S. Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins. Proceedings of the National Academy of Sciences of the United States of America. 108: 3504-9. PMID 21307307 DOI: 10.1073/Pnas.1018983108  0.401
2011 Ferreiro DU, Hegler JA, Komives EA, Wolynes PG. On the role of frustration in the energy landscapes of allosteric proteins. Proceedings of the National Academy of Sciences of the United States of America. 108: 3499-503. PMID 21273505 DOI: 10.1073/Pnas.1018980108  0.722
2011 Wang S, Shen T, Wolynes PG. The interplay of nonlinearity and architecture in equilibrium cytoskeletal mechanics. The Journal of Chemical Physics. 134: 014510. PMID 21219010 DOI: 10.1063/1.3518450  0.374
2011 Stevenson JD, Wolynes PG. The ultimate fate of supercooled liquids. The Journal of Physical Chemistry. A. 115: 3713-9. PMID 21171637 DOI: 10.1021/Jp1060057  0.629
2011 Wolynes PG. Water Mediated Interactions in Protein Folding and Structure Biophysical Journal. 100: 5a. DOI: 10.1016/J.Bpj.2010.12.238  0.409
2010 Prentiss MC, Wales DJ, Wolynes PG. The energy landscape, folding pathways and the kinetics of a knotted protein. Plos Computational Biology. 6: e1000835. PMID 20617197 DOI: 10.1371/Journal.Pcbi.1000835  0.595
2010 Oklejas V, Zong C, Papoian GA, Wolynes PG. Protein structure prediction: do hydrogen bonding and water-mediated interactions suffice? Methods (San Diego, Calif.). 52: 84-90. PMID 20561998 DOI: 10.1016/J.Ymeth.2010.05.006  0.728
2010 Bhattacharyya SM, Bagchi B, Wolynes PG. Subquadratic wavenumber dependence of the structural relaxation of supercooled liquid in the crossover regime. The Journal of Chemical Physics. 132: 104503. PMID 20232967 DOI: 10.1063/1.3330911  0.342
2010 Burger A, Walczak AM, Wolynes PG. Abduction and asylum in the lives of transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 107: 4016-21. PMID 20160109 DOI: 10.1073/Pnas.0915138107  0.547
2010 Itzhaki L, Wolynes P. Nature and nurture in protein folding and binding. Current Opinion in Structural Biology. 20: 1-2. PMID 20144542 DOI: 10.1016/J.Sbi.2010.01.007  0.374
2010 Weinkam P, Zimmermann J, Romesberg FE, Wolynes PG. The folding energy landscape and free energy excitations of cytochrome c. Accounts of Chemical Research. 43: 652-60. PMID 20143816 DOI: 10.1021/Ar9002703  0.826
2010 Trizac E, Levy Y, Wolynes PG. Capillarity theory for the fly-casting mechanism. Proceedings of the National Academy of Sciences of the United States of America. 107: 2746-50. PMID 20133683 DOI: 10.1073/Pnas.0914727107  0.407
2010 Friedrichs MS, Wolynes PG. Toward protein tertiary structure recognition by means of associative memory hamiltonians. Science (New York, N.Y.). 246: 371-3. PMID 17747919 DOI: 10.1126/Science.246.4928.371  0.319
2010 Zheng C, McCammon JA, Wolynes PG. Quantum simulation of nuclear rearrangement in electron transfer reactions. Proceedings of the National Academy of Sciences of the United States of America. 86: 6441-4. PMID 16594063 DOI: 10.1073/pnas.86.17.6441  0.38
2010 Itzhaki L, Wolynes P. Erratum to ‘Nature and nurture in protein folding and binding’ [Curr Opin Struct Biol 2010, 20:1–2] Current Opinion in Structural Biology. 20: 397. DOI: 10.1016/J.Sbi.2010.03.003  0.374
2010 Craig PO, Lätzer J, Weinkam P, Hoffman R, Komives E, Wolynes P. Prediction of H Exchange from Perfectly Funneled Structure Based Models Biophysical Journal. 98: 638a. DOI: 10.1016/J.Bpj.2009.12.3493  0.833
2010 Hoffman RM, Craig PO, DeVries IL, Komives EA, Wolynes PG. Folding Kinetics of IkB: Excursions Through the Energy Landscape Biophysical Journal. 98: 200a. DOI: 10.1016/J.Bpj.2009.12.1067  0.462
2009 Stevenson JD, Wolynes PG. A universal origin for secondary relaxations in supercooled liquids and structural glasses. Nature Physics. 6: 62-68. PMID 20336168 DOI: 10.1038/Nphys1432  0.656
2009 Lenz P, Cho SS, Wolynes PG. Analysis of single molecule folding studies with replica correlation functions. Chemical Physics Letters. 471: 310-314. PMID 20161316 DOI: 10.1016/J.Cplett.2009.02.054  0.598
2009 Schultz D, Wolynes PG, Ben Jacob E, Onuchic JN. Deciding fate in adverse times: sporulation and competence in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America. 106: 21027-34. PMID 19995980 DOI: 10.1073/Pnas.0912185106  0.632
2009 Hegler JA, Lätzer J, Shehu A, Clementi C, Wolynes PG. Restriction versus guidance in protein structure prediction. Proceedings of the National Academy of Sciences of the United States of America. 106: 15302-7. PMID 19706384 DOI: 10.1073/Pnas.0907002106  0.832
2009 Wang W, Xu WX, Levy Y, Trizac E, Wolynes PG. Confinement effects on the kinetics and thermodynamics of protein dimerization. Proceedings of the National Academy of Sciences of the United States of America. 106: 5517-22. PMID 19297622 DOI: 10.1073/Pnas.0809649106  0.394
2009 Weinkam P, Romesberg FE, Wolynes PG. Chemical frustration in the protein folding landscape: grand canonical ensemble simulations of cytochrome c. Biochemistry. 48: 2394-402. PMID 19199810 DOI: 10.1021/Bi802293M  0.823
2009 Wolynes PG. Spatiotemporal structures in aging and rejuvenating glasses. Proceedings of the National Academy of Sciences of the United States of America. 106: 1353-8. PMID 19188612 DOI: 10.1073/Pnas.0812418106  0.311
2009 Weinkam P, Pletneva EV, Gray HB, Winkler JR, Wolynes PG. Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles. Proceedings of the National Academy of Sciences of the United States of America. 106: 1796-801. PMID 19181849 DOI: 10.1073/Pnas.0813120106  0.812
2009 Cho SS, Levy Y, Wolynes PG. Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics. Proceedings of the National Academy of Sciences of the United States of America. 106: 434-9. PMID 19075236 DOI: 10.1073/Pnas.0810218105  0.661
2009 Dzero M, Schmalian J, Wolynes PG. Replica theory for fluctuations of the activation barriers in glassy systems Physical Review B - Condensed Matter and Materials Physics. 80. DOI: 10.1103/Physrevb.80.024204  0.326
2008 Hegler JA, Weinkam P, Wolynes PG. The spectrum of biomolecular states and motions. Hfsp Journal. 2: 307-13. PMID 19436496 DOI: 10.2976/1.3003931  0.801
2008 Whitford PC, Onuchic JN, Wolynes PG. Energy landscape along an enzymatic reaction trajectory: hinges or cracks? Hfsp Journal. 2: 61-4. PMID 19404472 DOI: 10.2976/1.2894846  0.579
2008 Stevenson JD, Wolynes PG. On the surface of glasses. The Journal of Chemical Physics. 129: 234514. PMID 19102545 DOI: 10.1063/1.3041651  0.655
2008 Weinkam P, Zimmermann J, Sagle LB, Matsuda S, Dawson PE, Wolynes PG, Romesberg FE. Characterization of alkaline transitions in ferricytochrome c using carbon-deuterium infrared probes. Biochemistry. 47: 13470-80. PMID 19035653 DOI: 10.1021/Bi801223N  0.795
2008 Schultz D, Walczak AM, Onuchic JN, Wolynes PG. Extinction and resurrection in gene networks. Proceedings of the National Academy of Sciences of the United States of America. 105: 19165-70. PMID 19033463 DOI: 10.1073/Pnas.0810366105  0.659
2008 Stevenson JD, Walczak AM, Hall RW, Wolynes PG. Constructing explicit magnetic analogies for the dynamics of glass forming liquids. The Journal of Chemical Physics. 129: 194505. PMID 19026064 DOI: 10.1063/1.3009827  0.724
2008 Bhattacharyya SM, Bagchi B, Wolynes PG. Facilitation, complexity growth, mode coupling, and activated dynamics in supercooled liquids. Proceedings of the National Academy of Sciences of the United States of America. 105: 16077-82. PMID 18927234 DOI: 10.1073/Pnas.0808375105  0.33
2008 Ferreiro DU, Wolynes PG. The capillarity picture and the kinetics of one-dimensional protein folding. Proceedings of the National Academy of Sciences of the United States of America. 105: 9853-4. PMID 18632565 DOI: 10.1073/Pnas.0805287105  0.732
2008 Prentiss MC, Wales DJ, Wolynes PG. Protein structure prediction using basin-hopping. The Journal of Chemical Physics. 128: 225106. PMID 18554063 DOI: 10.1063/1.2929833  0.648
2008 Ferreiro DU, Walczak AM, Komives EA, Wolynes PG. The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures. Plos Computational Biology. 4: e1000070. PMID 18483553 DOI: 10.1371/Journal.Pcbi.1000070  0.744
2008 Shen T, Zong C, Portman JJ, Wolynes PG. Variationally determined free energy profiles for structural models of proteins: characteristic temperatures for folding and trapping. The Journal of Physical Chemistry. B. 112: 6074-82. PMID 18376882 DOI: 10.1021/Jp076280N  0.799
2008 Lätzer J, Shen T, Wolynes PG. Conformational switching upon phosphorylation: a predictive framework based on energy landscape principles. Biochemistry. 47: 2110-22. PMID 18198897 DOI: 10.1021/Bi701350V  0.833
2008 Cho SS, Weinkam P, Wolynes PG. Origins of barriers and barrierless folding in BBL. Proceedings of the National Academy of Sciences of the United States of America. 105: 118-23. PMID 18172203 DOI: 10.1073/Pnas.0709376104  0.817
2008 Hall RW, Wolynes PG. Intermolecular forces and the glass transition. The Journal of Physical Chemistry. B. 112: 301-12. PMID 17990867 DOI: 10.1021/Jp075017J  0.576
2007 Sutto L, Lätzer J, Hegler JA, Ferreiro DU, Wolynes PG. Consequences of localized frustration for the folding mechanism of the IM7 protein. Proceedings of the National Academy of Sciences of the United States of America. 104: 19825-30. PMID 18077415 DOI: 10.1073/Pnas.0709922104  0.796
2007 Ferreiro DU, Hegler JA, Komives EA, Wolynes PG. Localizing frustration in native proteins and protein assemblies. Proceedings of the National Academy of Sciences of the United States of America. 104: 19819-24. PMID 18077414 DOI: 10.1073/Pnas.0709915104  0.712
2007 Lu T, Shen T, Bennett MR, Wolynes PG, Hasty J. Phenotypic variability of growing cellular populations. Proceedings of the National Academy of Sciences of the United States of America. 104: 18982-7. PMID 18025471 DOI: 10.1073/Pnas.0706115104  0.424
2007 Schultz D, Ben Jacob E, Onuchic JN, Wolynes PG. Molecular level stochastic model for competence cycles in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America. 104: 17582-7. PMID 17962411 DOI: 10.1073/Pnas.0707965104  0.653
2007 Schultz D, Onuchic JN, Wolynes PG. Understanding stochastic simulations of the smallest genetic networks. The Journal of Chemical Physics. 126: 245102. PMID 17614590 DOI: 10.1063/1.2741544  0.653
2007 Zong C, Wilson CJ, Shen T, Wittung-Stafshede P, Mayo SL, Wolynes PG. Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin. Proceedings of the National Academy of Sciences of the United States of America. 104: 3159-64. PMID 17301232 DOI: 10.1073/Pnas.0611149104  0.59
2007 Lätzer J, Papoian GA, Prentiss MC, Komives EA, Wolynes PG. Induced fit, folding, and recognition of the NF-kappaB-nuclear localization signals by IkappaBalpha and IkappaBbeta. Journal of Molecular Biology. 367: 262-74. PMID 17257619 DOI: 10.1016/J.Jmb.2006.12.006  0.787
2007 Levy Y, Onuchic JN, Wolynes PG. Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition. Journal of the American Chemical Society. 129: 738-9. PMID 17243791 DOI: 10.1021/Ja065531N  0.569
2007 Ferreiro DU, Cervantes CF, Truhlar SM, Cho SS, Wolynes PG, Komives EA. Stabilizing IkappaBalpha by "consensus" design. Journal of Molecular Biology. 365: 1201-16. PMID 17174335 DOI: 10.1016/J.Jmb.2006.11.044  0.753
2007 Lubchenko V, Wolynes PG. Theory of structural glasses and supercooled liquids. Annual Review of Physical Chemistry. 58: 235-66. PMID 17067282 DOI: 10.1146/Annurev.Physchem.58.032806.104653  0.666
2007 Lubchenko V, Wolynes PG. The microscopic quantum theory of low temperature amorphous solids Advances in Chemical Physics. 136: 95-206. DOI: 10.1002/9780470175422.ch3  0.596
2006 Prentiss MC, Hardin C, Eastwood MP, Zong C, Wolynes PG. Protein Structure Prediction:  The Next Generation. Journal of Chemical Theory and Computation. 2: 705-16. PMID 26626675 DOI: 10.1021/Ct0600058  0.752
2006 Lätzer J, Eastwood MP, Wolynes PG. Simulation studies of the fidelity of biomolecular structure ensemble recreation. The Journal of Chemical Physics. 125: 214905. PMID 17166047 DOI: 10.1063/1.2375121  0.791
2006 Lu T, Shen T, Zong C, Hasty J, Wolynes PG. Statistics of cellular signal transduction as a race to the nucleus by multiple random walkers in compartment/phosphorylation space. Proceedings of the National Academy of Sciences of the United States of America. 103: 16752-7. PMID 17071742 DOI: 10.1073/Pnas.0607698103  0.595
2006 Lan Y, Wolynes PG, Papoian GA. A variational approach to the stochastic aspects of cellular signal transduction. The Journal of Chemical Physics. 125: 124106. PMID 17014165 DOI: 10.1063/1.2353835  0.602
2006 Okazaki K, Koga N, Takada S, Onuchic JN, Wolynes PG. Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations. Proceedings of the National Academy of Sciences of the United States of America. 103: 11844-9. PMID 16877541 DOI: 10.1073/Pnas.0604375103  0.611
2006 Zong C, Wilson CJ, Shen T, Wolynes PG, Wittung-Stafshede P. Phi-value analysis of apo-azurin folding: comparison between experiment and theory. Biochemistry. 45: 6458-66. PMID 16700556 DOI: 10.1021/Bi060025W  0.592
2006 Lu T, Hasty J, Wolynes PG. Effective temperature in stochastic kinetics and gene networks. Biophysical Journal. 91: 84-94. PMID 16617067 DOI: 10.1529/Biophysj.105.074914  0.444
2006 Zong C, Papoian GA, Ulander J, Wolynes PG. Role of topology, nonadditivity, and water-mediated interactions in predicting the structures of alpha/beta proteins. Journal of the American Chemical Society. 128: 5168-76. PMID 16608353 DOI: 10.1021/Ja058589V  0.734
2006 Zong C, Lu T, Shen T, Wolynes PG. Nonequilibrium self-assembly of linear fibers: microscopic treatment of growth, decay, catastrophe and rescue. Physical Biology. 3: 83-92. PMID 16582473 DOI: 10.1088/1478-3975/3/1/009  0.617
2006 Cho SS, Levy Y, Wolynes PG. P versus Q: structural reaction coordinates capture protein folding on smooth landscapes. Proceedings of the National Academy of Sciences of the United States of America. 103: 586-91. PMID 16407126 DOI: 10.1073/Pnas.0509768103  0.628
2006 Lubchenko V, Silbey RJ, Wolynes PG. Electrodynamics of amorphous media at low temperatures Molecular Physics. 104: 1325-1335. DOI: 10.1080/00268970500395661  0.67
2006 Stevenson JD, Schmalian J, Wolynes PG. The shapes of cooperatively rearranging regions in glass-forming liquids Nature Physics. 2: 268-274. DOI: 10.1038/Nphys261  0.657
2006 Prentiss MC, Hardin C, Eastwood MP, Zong C, Wolynes PG. Protein structure prediction: The next generation Journal of Chemical Theory and Computation. 2: 705-716. DOI: 10.1021/ct0600058  0.777
2006 Leitner DM, Wolynes PG. Quantum theory of enhanced unimolecular reaction rates below the ergodicity threshold Chemical Physics. 329: 163-167. DOI: 10.1016/J.Chemphys.2006.05.013  0.58
2005 Wolynes PG. Recent successes of the energy landscape theory of protein folding and function. Quarterly Reviews of Biophysics. 38: 405-10. PMID 16934172 DOI: 10.1017/S0033583505004075  0.423
2005 Stevenson JD, Wolynes PG. Thermodynamic-kinetic correlations in supercooled liquids: a critical survey of experimental data and predictions of the random first-order transition theory of glasses. The Journal of Physical Chemistry. B. 109: 15093-7. PMID 16852910 DOI: 10.1021/Jp052279H  0.664
2005 Lubchenko V, Wolynes PG, Frauenfelder H. Mosaic energy landscapes of liquids and the control of protein conformational dynamics by glass-forming solvents. The Journal of Physical Chemistry. B. 109: 7488-99. PMID 16851860 DOI: 10.1021/Jp045205Z  0.709
2005 Miyashita O, Wolynes PG, Onuchic JN. Simple energy landscape model for the kinetics of functional transitions in proteins. The Journal of Physical Chemistry. B. 109: 1959-69. PMID 16851180 DOI: 10.1021/Jp046736Q  0.734
2005 Oliveberg M, Wolynes PG. The experimental survey of protein-folding energy landscapes. Quarterly Reviews of Biophysics. 38: 245-88. PMID 16780604 DOI: 10.1017/S0033583506004185  0.44
2005 Hornos JE, Schultz D, Innocentini GC, Wang J, Walczak AM, Onuchic JN, Wolynes PG. Self-regulating gene: an exact solution. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 051907. PMID 16383645 DOI: 10.1103/Physreve.72.051907  0.641
2005 Shen T, Wolynes PG. Nonequilibrium statistical mechanical models for cytoskeletal assembly: towards understanding tensegrity in cells. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 041927. PMID 16383440 DOI: 10.1103/Physreve.72.041927  0.33
2005 Walczak AM, Onuchic JN, Wolynes PG. Absolute rate theories of epigenetic stability. Proceedings of the National Academy of Sciences of the United States of America. 102: 18926-31. PMID 16361441 DOI: 10.1073/Pnas.0509547102  0.507
2005 Ferreiro DU, Cho SS, Komives EA, Wolynes PG. The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family. Journal of Molecular Biology. 354: 679-92. PMID 16257414 DOI: 10.1016/J.Jmb.2005.09.078  0.796
2005 Bhattacharyya SM, Bagchi B, Wolynes PG. Bridging the gap between the mode coupling and the random first order transition theories of structural relaxation in liquids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 031509. PMID 16241446 DOI: 10.1103/Physreve.72.031509  0.328
2005 Cho SS, Levy Y, Onuchic JN, Wolynes PG. Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation. Physical Biology. 2: S44-55. PMID 16204848 DOI: 10.1088/1478-3975/2/2/S05  0.67
2005 Shen T, Zong C, Hamelberg D, McCammon JA, Wolynes PG. The folding energy landscape and phosphorylation: modeling the conformational switch of the NFAT regulatory domain. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 19: 1389-95. PMID 16126906 DOI: 10.1096/Fj.04-3590Hyp  0.659
2005 Weinkam P, Zong C, Wolynes PG. A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments. Proceedings of the National Academy of Sciences of the United States of America. 102: 12401-6. PMID 16116080 DOI: 10.1073/Pnas.0505274102  0.826
2005 Shen T, Hofmann CP, Oliveberg M, Wolynes PG. Scanning malleable transition state ensembles: comparing theory and experiment for folding protein U1A. Biochemistry. 44: 6433-9. PMID 15850377 DOI: 10.1021/Bi0500170  0.423
2005 Levy Y, Cho SS, Shen T, Onuchic JN, Wolynes PG. Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery. Proceedings of the National Academy of Sciences of the United States of America. 102: 2373-8. PMID 15701699 DOI: 10.1073/Pnas.0409572102  0.73
2005 Levy Y, Cho SS, Onuchic JN, Wolynes PG. A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes. Journal of Molecular Biology. 346: 1121-45. PMID 15701522 DOI: 10.1016/J.Jmb.2004.12.021  0.713
2005 Wolynes PG. Energy landscapes and solved protein-folding problems. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 363: 453-64; discussion 4. PMID 15664893 DOI: 10.1098/Rsta.2004.1502  0.463
2005 Dzero M, Schmalian J, Wolynes PG. Activated events in glasses: The structure of entropic droplets Physical Review B - Condensed Matter and Materials Physics. 72. DOI: 10.1103/Physrevb.72.100201  0.314
2004 Yang S, Cho SS, Levy Y, Cheung MS, Levine H, Wolynes PG, Onuchic JN. Domain swapping is a consequence of minimal frustration. Proceedings of the National Academy of Sciences of the United States of America. 101: 13786-91. PMID 15361578 DOI: 10.1073/Pnas.0403724101  0.683
2004 Lubchenko V, Wolynes PG. Theory of aging in structural glasses. The Journal of Chemical Physics. 121: 2852-65. PMID 15291595 DOI: 10.1063/1.1771633  0.679
2004 Levy Y, Caflisch A, Onuchic JN, Wolynes PG. The folding and dimerization of HIV-1 protease: evidence for a stable monomer from simulations. Journal of Molecular Biology. 340: 67-79. PMID 15184023 DOI: 10.1016/J.Jmb.2004.04.028  0.551
2004 Wolynes PG. Latest folding game results: protein A barely frustrates computationalists. Proceedings of the National Academy of Sciences of the United States of America. 101: 6837-8. PMID 15123824 DOI: 10.1073/Pnas.0402034101  0.487
2004 Onuchic JN, Wolynes PG. Theory of protein folding. Current Opinion in Structural Biology. 14: 70-5. PMID 15102452 DOI: 10.1016/J.Sbi.2004.01.009  0.625
2004 Gruebele M, Wolynes PG. Vibrational energy flow and chemical reactions. Accounts of Chemical Research. 37: 261-7. PMID 15096063 DOI: 10.1021/Ar030230T  0.338
2004 Papoian GA, Ulander J, Eastwood MP, Luthey-Schulten Z, Wolynes PG. Water in protein structure prediction. Proceedings of the National Academy of Sciences of the United States of America. 101: 3352-7. PMID 14988499 DOI: 10.1073/Pnas.0307851100  0.754
2004 Fujitsuka Y, Takada S, Luthey-Schulten ZA, Wolynes PG. Optimizing physical energy functions for protein folding. Proteins. 54: 88-103. PMID 14705026 DOI: 10.1002/Prot.10429  0.68
2004 Levy Y, Wolynes PG, Onuchic JN. Protein topology determines binding mechanism. Proceedings of the National Academy of Sciences of the United States of America. 101: 511-6. PMID 14694192 DOI: 10.1073/Pnas.2534828100  0.591
2004 Levy Y, Papoian GA, Onuchic JN, Wolynes PG. Energy landscape analysis of protein dimers Israel Journal of Chemistry. 44: 281-297. DOI: 10.1560/Xgcb-Wuhn-Jrjc-Bv0Y  0.749
2003 Papoian GA, Ulander J, Wolynes PG. Role of water mediated interactions in protein-protein recognition landscapes. Journal of the American Chemical Society. 125: 9170-8. PMID 15369374 DOI: 10.1021/Ja034729U  0.641
2003 Miyashita O, Onuchic JN, Wolynes PG. Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins. Proceedings of the National Academy of Sciences of the United States of America. 100: 12570-5. PMID 14566052 DOI: 10.1073/Pnas.2135471100  0.706
2003 Plotkin SS, Wolynes PG. Buffed energy landscapes: another solution to the kinetic paradoxes of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 100: 4417-22. PMID 12677002 DOI: 10.1073/Pnas.0330720100  0.738
2003 Hall RW, Wolynes PG. Microscopic theory of network glasses. Physical Review Letters. 90: 085505. PMID 12633439 DOI: 10.1103/Physrevlett.90.085505  0.522
2003 Papoian GA, Wolynes PG. The physics and bioinformatics of binding and folding-an energy landscape perspective. Biopolymers. 68: 333-49. PMID 12601793 DOI: 10.1002/Bip.10286  0.7
2003 Lubchenko V, Wolynes PG. The origin of the boson peak and thermal conductivity plateau in low-temperature glasses. Proceedings of the National Academy of Sciences of the United States of America. 100: 1515-8. PMID 12578972 DOI: 10.1073/Pnas.252786999  0.67
2003 Hardin C, Eastwood MP, Prentiss MC, Luthey-Schulten Z, Wolynes PG. Associative memory Hamiltonians for structure prediction without homology: alpha/beta proteins. Proceedings of the National Academy of Sciences of the United States of America. 100: 1679-84. PMID 12554830 DOI: 10.1073/Pnas.252753899  0.809
2003 Hall RW, Wolynes PG. Hall and Wolynes Reply: Physical Review Letters. 91. DOI: 10.1103/Physrevlett.91.159602  0.479
2003 Westfahl H, Schmalian J, Wolynes PG. Dynamical mean-field theory of quantum stripe glasses Physical Review B. 68. DOI: 10.1103/Physrevb.68.134203  0.306
2003 Lubchenko V, Wolynes PG. Barrier softening near the onset of nonactivated transport in supercooled liquids: Implications for establishing detailed connection between thermodynamic and kinetic anomalies in supercooled liquids Journal of Chemical Physics. 119: 9088-9105. DOI: 10.1063/1.1614180  0.675
2003 Eastwood MP, Hardin C, Luthey-Schulten Z, Wolynes PG. Statistical mechanical refinement of protein structure prediction schemes. II. Mayer cluster expansion approach Journal of Chemical Physics. 118: 8500-8512. DOI: 10.1063/1.1565106  0.766
2003 Leitner DM, Levine B, Quenneville J, Martínez TJ, Wolynes PG. Quantum energy flow and trans-stilbene photoisomerization: An example of a non-RRKM reaction Journal of Physical Chemistry A. 107: 10706-10716. DOI: 10.1021/Jp0305180  0.607
2002 Hardin C, Eastwood MP, Prentiss M, Luthey-Schulten Z, Wolynes PG. Folding funnels: the key to robust protein structure prediction. Journal of Computational Chemistry. 23: 138-46. PMID 11913379 DOI: 10.1002/Jcc.1162  0.819
2002 Eastwood MP, Hardin C, Luthey-Schulten Z, Wolynes PG. Statistical mechanical refinement of protein structure prediction schemes: Cumulant expansion approach Journal of Chemical Physics. 117: 4602-4615. DOI: 10.1063/1.1494417  0.742
2002 McCammon J, Wolynes PG. Enlarging the landscape Current Opinion in Structural Biology. 12: 143-145. DOI: 10.1016/S0959-440X(02)00301-9  0.399
2002 Wu S, Westfahl H, Schmalian J, Wolynes PG. Theory of microemulsion glasses Chemical Physics Letters. 359: 1-7. DOI: 10.1016/S0009-2614(02)00246-4  0.319
2001 Lubchenko V, Wolynes PG. Intrinsic quantum excitations of low temperature glasses. Physical Review Letters. 87: 195901. PMID 11690429 DOI: 10.1103/Physrevlett.87.195901  0.659
2001 Xia X, Wolynes PG. Microscopic theory of heterogeneity and nonexponential relaxations in supercooled liquids. Physical Review Letters. 86: 5526-9. PMID 11415292 DOI: 10.1103/Physrevlett.86.5526  0.486
2001 Eastwood MP, Hardin C, Luthey-Schulten Z, Wolynes PG. Evaluating protein structure-prediction schemes using energy landscape theory Ibm Journal of Research and Development. 45: 475-497. DOI: 10.1147/Rd.453.0475  0.636
2001 Portman JJ, Takada S, Wolynes PG. Microscopic theory of protein folding rates. II. Local reaction coordinates and chain dynamics Journal of Chemical Physics. 114: 5082-5096. DOI: 10.1063/1.1334663  0.746
2001 Portman JJ, Takada S, Wolynes PG. Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach Journal of Chemical Physics. 114: 5069-5081. DOI: 10.1063/1.1334662  0.762
2001 Eastwood MP, Wolynes PG. Role of explicitly cooperative interactions in protein folding funnels: A simulation study The Journal of Chemical Physics. 114: 4702. DOI: 10.1063/1.1315994  0.429
2001 Xia X, Wolynes PG. Diffusion and the Mesoscopic Hydrodynamics of Supercooled Liquids† The Journal of Physical Chemistry B. 105: 6570-6573. DOI: 10.1021/Jp004616M  0.332
2000 Hardin C, Eastwood MP, Luthey-Schulten Z, Wolynes PG. Associative memory hamiltonians for structure prediction without homology: alpha-helical proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 14235-40. PMID 11114172 DOI: 10.1073/pnas.230432197  0.754
2000 Shoemaker BA, Portman JJ, Wolynes PG. Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. Proceedings of the National Academy of Sciences of the United States of America. 97: 8868-73. PMID 10908673 DOI: 10.1073/Pnas.160259697  0.809
2000 Xia X, Wolynes PG. Fragilities of liquids predicted from the random first order transition theory of glasses. Proceedings of the National Academy of Sciences of the United States of America. 97: 2990-4. PMID 10737779 DOI: 10.1073/Pnas.97.7.2990  0.526
2000 Leitner D, Wolynes P. Heat flow through an insulating nanocrystal Physical Review E. 61: 2902-2908. DOI: 10.1103/Physreve.61.2902  0.548
1999 Shoemaker BA, Wang J, Wolynes PG. Exploring structures in protein folding funnels with free energy functionals: the transition state ensemble. Journal of Molecular Biology. 287: 675-94. PMID 10092467 DOI: 10.1006/Jmbi.1999.2613  0.745
1999 Shoemaker BA, Wolynes PG. Exploring structures in protein folding funnels with free energy functionals: the denatured ensemble. Journal of Molecular Biology. 287: 657-74. PMID 10092466 DOI: 10.1006/Jmbi.1999.2612  0.753
1999 Socci ND, Onuchic JN, Wolynes PG. Stretching lattice models of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 96: 2031-5. PMID 10051589 DOI: 10.1073/Pnas.96.5.2031  0.576
1999 Hardin C, Luthey-Schulten Z, Wolynes PG. Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides. Proteins. 34: 281-94. PMID 10024016 DOI: 10.1002/(Sici)1097-0134(19990215)34:3<281::Aid-Prot2>3.0.Co;2-2  0.78
1999 Wolynes PG, Eaton WA. The physics of protein folding Physics World. 12: 39-44. DOI: 10.1088/2058-7058/12/9/24  0.351
1999 Takada S, Luthey-Schulten Z, Wolynes PG. Folding dynamics with nonadditive forces: A simulation study of a designed helical protein and a random heteropolymer The Journal of Chemical Physics. 110: 11616-11629. DOI: 10.1063/1.479101  0.645
1999 Portman JJ, Wolynes PG. Complementary variational approximations for intermittency and reaction dynamics in fluctuating environments Journal of Physical Chemistry A. 103: 10602-10610. DOI: 10.1021/Jp992334K  0.691
1999 Prince RB, Saven JG, Wolynes PG, Moore JS. Cooperative conformational transitions in phenylene ethynylene oligomers: Chain-length dependence Journal of the American Chemical Society. 121: 3114-3121. DOI: 10.1021/Ja983995I  0.71
1999 Onuchic JN, Wang J, Wolynes PG. Analyzing single molecule trajectories on complex energy landscapes using replica correlation functions Chemical Physics. 247: 175-184. DOI: 10.1016/S0301-0104(99)00203-7  0.543
1998 Brooks CL, Gruebele M, Onuchic JN, Wolynes PG. Chemical physics of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 95: 11037-8. PMID 9736683 DOI: 10.1073/pnas.95.19.11037  0.477
1998 Socci ND, Onuchic JN, Wolynes PG. Protein folding mechanisms and the multidimensional folding funnel. Proteins. 32: 136-58. PMID 9714155 DOI: 10.1002/(Sici)1097-0134(19980801)32:2<136::Aid-Prot2>3.0.Co;2-J  0.597
1998 Gruebele M, Wolynes PG. Satisfying turns in folding transitions. Nature Structural Biology. 5: 662-5. PMID 9699621 DOI: 10.1038/1354  0.357
1998 Bigwood R, Gruebele M, Leitner DM, Wolynes PG. The vibrational energy flow transition in organic molecules: theory meets experiment. Proceedings of the National Academy of Sciences of the United States of America. 95: 5960-4. PMID 9600899 DOI: 10.1073/Pnas.95.11.5960  0.618
1998 Koretke KK, Luthey-Schulten Z, Wolynes PG. Self-consistently optimized energy functions for protein structure prediction by molecular dynamics. Proceedings of the National Academy of Sciences of the United States of America. 95: 2932-7. PMID 9501193 DOI: 10.1073/Pnas.95.6.2932  0.677
1998 Portman JJ, Takada S, Wolynes PG. Variational theory for site resolved protein folding free energy surfaces Physical Review Letters. 81: 5237-5240. DOI: 10.1103/Physrevlett.81.5237  0.763
1998 Plotkin SS, Wolynes PG. Non-Markovian Configurational Diffusion and Reaction Coordinates for Protein Folding Physical Review Letters. 80: 5015-5018. DOI: 10.1103/Physrevlett.80.5015  0.393
1998 Wolynes P. The concept of nucleation Folding and Design. 3: R107. DOI: 10.1016/S1359-0278(98)00055-8  0.4
1997 Wolynes PG. Entropy Crises in Glasses and Random Heteropolymers. Journal of Research of the National Institute of Standards and Technology. 102: 187-194. PMID 27805136 DOI: 10.6028/Jres.102.014  0.315
1997 Wolynes PG. As simple as can be? Nature Structural Biology. 4: 871-4. PMID 9360595 DOI: 10.1038/Nsb1197-871  0.332
1997 Onuchic JN, Luthey-Schulten Z, Wolynes PG. Theory of protein folding: the energy landscape perspective. Annual Review of Physical Chemistry. 48: 545-600. PMID 9348663 DOI: 10.1146/Annurev.Physchem.48.1.545  0.745
1997 Panchenko AR, Luthey-Schulten Z, Cole R, Wolynes PG. The foldon universe: a survey of structural similarity and self-recognition of independently folding units. Journal of Molecular Biology. 272: 95-105. PMID 9299340 DOI: 10.1006/Jmbi.1997.1205  0.748
1997 Nelson JC, Saven JG, Moore JS, Wolynes PG. Solvophobically driven folding of nonbiological oligomers. Science (New York, N.Y.). 277: 1793-6. PMID 9295264 DOI: 10.1126/Science.277.5333.1793  0.719
1997 Wolynes PG. Folding funnels and energy landscapes of larger proteins within the capillarity approximation. Proceedings of the National Academy of Sciences of the United States of America. 94: 6170-5. PMID 9177189 DOI: 10.1073/Pnas.94.12.6170  0.48
1997 Haney P, Konisky J, Koretke KK, Luthey-Schulten Z, Wolynes PG. Structural basis for thermostability and identification of potential active site residues for adenylate kinases from the archaeal genus Methanococcus. Proteins. 28: 117-30. PMID 9144797 DOI: 10.1002/(Sici)1097-0134(199705)28:1<117::Aid-Prot12>3.0.Co;2-M  0.625
1997 Takada S, Portman JJ, Wolynes PG. An elementary mode coupling theory of random heteropolymer dynamics. Proceedings of the National Academy of Sciences of the United States of America. 94: 2318-21. PMID 9122192 DOI: 10.1073/Pnas.94.6.2318  0.697
1997 Shoemaker BA, Wang J, Wolynes PG. Structural correlations in protein folding funnels. Proceedings of the National Academy of Sciences of the United States of America. 94: 777-82. PMID 9023333 DOI: 10.1073/Pnas.94.3.777  0.749
1997 Leitner DM, Wolynes PG. Quantization of the Stochastic Pump Model of Arnold Diffusion Physical Review Letters. 79: 55-58. DOI: 10.1103/Physrevlett.79.55  0.555
1997 Takada S, Wolynes PG. Microscopic theory of critical folding nuclei and reconfiguration activation barriers in folding proteins The Journal of Chemical Physics. 107: 9585-9598. DOI: 10.1063/1.475256  0.424
1997 Plotkin SS, Wang J, Wolynes PG. Statistical mechanics of a correlated energy landscape model for protein folding funnels The Journal of Chemical Physics. 106: 2932-2948. DOI: 10.1063/1.473355  0.456
1997 Wang J, Plotkin SS, Wolynes PG. Configurational Diffusion on a Locally Connected Correlated Energy Landscape; Application to Finite, Random Heteropolymers Journal De Physique I. 7: 395-421. DOI: 10.1051/Jp1:1997168  0.363
1997 Saven JG, Wolynes PG. Statistical mechanics of the combinatorial synthesis and analysis of folding macromolecules Journal of Physical Chemistry B. 101: 8375-8389. DOI: 10.1021/Jp971707J  0.722
1997 Leitner DM, Wolynes PG. Vibrational Mixing and Energy Flow in Polyatomics:  Quantitative Prediction Using Local Random Matrix Theory The Journal of Physical Chemistry A. 101: 541-548. DOI: 10.1021/Jp9619088  0.612
1997 Saven JG, Wolynes PG. Local signals in the energy landscape of collapsed helical proteins Physica D: Nonlinear Phenomena. 107: 330-337. DOI: 10.1016/S0167-2789(97)00102-4  0.429
1997 Plotkin SS, Wang J, Wolynes PG. Statistical mechanis of correlated energy landscape models for random heteropolymers and proteins Physica D: Nonlinear Phenomena. 107: 322-325. DOI: 10.1016/S0167-2789(97)00100-0  0.427
1997 Panchenko AR, Luthey-Schulten Z, Wolynes PG. Foldons as independently folding units of proteins Physica D: Nonlinear Phenomena. 107: 312-315. DOI: 10.1016/S0167-2789(97)00098-5  0.761
1997 Leitner DM, Wolynes PG. Quantum energy flow during molecular isomerization Chemical Physics Letters. 280: 411-418. DOI: 10.1016/S0009-2614(97)01120-2  0.587
1997 Leitner DM, Wolynes PG. Intramolecular energy flow in the condensed phase: effects of dephasing on localization in the quantum stochastic pump model Chemical Physics Letters. 276: 289-295. DOI: 10.1016/S0009-2614(97)00859-2  0.583
1996 Leitner DM, Wolynes PG. Many-dimensional quantum energy flow at low energy. Physical Review Letters. 76: 216-219. PMID 10061045 DOI: 10.1103/Physrevlett.76.216  0.577
1996 Plotkin SS, Wang J, Wolynes PG. Correlated energy landscape model for finite, random heteropolymers. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 53: 6271-6296. PMID 9964988 DOI: 10.1103/Physreve.53.6271  0.314
1996 Onuchic JN, Socci ND, Luthey-Schulten Z, Wolynes PG. Protein folding funnels: the nature of the transition state ensemble. Folding & Design. 1: 441-50. PMID 9080190 DOI: 10.1016/S1359-0278(96)00060-0  0.726
1996 Wolynes PG. Symmetry and the energy landscapes of biomolecules. Proceedings of the National Academy of Sciences of the United States of America. 93: 14249-55. PMID 8962034 DOI: 10.1073/Pnas.93.25.14249  0.418
1996 Wolynes PG, Luthey-Schulten Z, Onuchic JN. Fast-folding experiments and the topography of protein folding energy landscapes Chemistry and Biology. 3: 425-432. PMID 8807873 DOI: 10.1016/S1074-5521(96)90090-3  0.73
1996 Koretke KK, Luthey-Schulten Z, Wolynes PG. Self-consistently optimized statistical mechanical energy functions for sequence structure alignment. Protein Science : a Publication of the Protein Society. 5: 1043-59. PMID 8762136 DOI: 10.1002/Pro.5560050607  0.623
1996 Panchenko AR, Luthey-Schulten Z, Wolynes PG. Foldons, protein structural modules, and exons. Proceedings of the National Academy of Sciences of the United States of America. 93: 2008-13. PMID 8700876 DOI: 10.1073/Pnas.93.5.2008  0.758
1996 Saven JG, Wolynes PG. Local conformational signals and the statistical thermodynamics of collapsed helical proteins. Journal of Molecular Biology. 257: 199-216. PMID 8632455 DOI: 10.1006/Jmbi.1996.0156  0.759
1996 Leitner DM, Wolynes PG. Vibrational relaxation and energy localization in polyatomics: Effects of high‐order resonances on flow rates and the quantum ergodicity transition The Journal of Chemical Physics. 105: 11226-11236. DOI: 10.1063/1.472920  0.573
1996 Wang J, Saven JG, Wolynes PG. Kinetics In A Globally Connected, Correlated Random Energy Model Journal of Chemical Physics. 105: 11276-11284. DOI: 10.1063/1.472869  0.749
1996 Schofield SA, Wyatt RE, Wolynes PG. Computational study of many‐dimensional quantum vibrational energy redistribution. I. Statistics of the survival probability The Journal of Chemical Physics. 105: 940-952. DOI: 10.1063/1.471937  0.335
1996 Socci ND, Onuchic JN, Wolynes PG. Diffusive dynamics of the reaction coordinate for protein folding funnels The Journal of Chemical Physics. 104: 5860-5868. DOI: 10.1063/1.471317  0.568
1996 Dakhnovskii Y, Lubchenko V, Wolynes P. ''False tunneling'' and multirelaxation time nonexponential kinetics of electron transfer in polar glasses Journal of Chemical Physics. 104: 1875-1885. DOI: 10.1063/1.470943  0.643
1996 Wang J, Wolynes P. Instantons and the Fluctuating Path Description of Reactions in Complex Environments The Journal of Physical Chemistry. 100: 1129-1136. DOI: 10.1021/Jp951325I  0.307
1996 Zheng C, Makarov V, Wolynes PG. Statistical Survey of Transition States and Conformational Substates of the Sperm Whale Myoglobin−CO Reaction System Journal of the American Chemical Society. 118: 2818-2824. DOI: 10.1021/Ja9523092  0.437
1996 Leitner DM, Wolynes PG. Statistical properties of localized vibrational eigenstates Chemical Physics Letters. 258: 18-24. DOI: 10.1016/0009-2614(96)00614-8  0.565
1996 Wang J, Saven JG, Wolynes PG. Kinetics in a globally connected, correlated random energy model Journal of Chemical Physics. 105: 11276-11284.  0.698
1996 Dakhnovskii Y, Lubchenko V, Wolynes P. "False tunneling" and multirelaxation time nonexponential kinetics of electron transfer in polar glasses Journal of Chemical Physics. 104: 1875-1885.  0.581
1995 Wolynes PG, Onuchic JN, Thirumalai D. Navigating the folding routes. Science (New York, N.Y.). 267: 1619-20. PMID 7886447 DOI: 10.1126/Science.7886447  0.487
1995 Bryngelson JD, Onuchic JN, Socci ND, Wolynes PG. Funnels, pathways, and the energy landscape of protein folding: a synthesis. Proteins. 21: 167-95. PMID 7784423 DOI: 10.1002/Prot.340210302  0.63
1995 Onuchic JN, Wolynes PG, Luthey-Schulten Z, Socci ND. Toward an outline of the topography of a realistic protein-folding funnel. Proceedings of the National Academy of Sciences of the United States of America. 92: 3626-30. PMID 7724609 DOI: 10.1073/Pnas.92.8.3626  0.748
1995 Wolynes PG. Biomolecular folding in vacuo!!!(?) Proceedings of the National Academy of Sciences of the United States of America. 92: 2426-7. PMID 7708658 DOI: 10.1073/Pnas.92.7.2426  0.443
1995 Panchenko AR, Wang J, Nienhaus GU, Wolynes PG. Analysis of Ligand Binding to Heme Proteins Using a Fluctuating Path Description The Journal of Physical Chemistry. 99: 9278-9282. DOI: 10.1021/J100022A049  0.607
1995 Schofield SA, Wolynes PG. Rate Theory and Quantum Energy Flow in Molecules: Modeling the Effects of Anisotropic Diffusion and of Dephasing The Journal of Physical Chemistry. 99: 2753-2763. DOI: 10.1021/J100009A034  0.334
1995 Luthey-Schulten Z, Ramirez BE, Wolynes PG. Helix-Coil, Liquid Crystal, and Spin Glass Transitions of a Collapsed Heteropolymer The Journal of Physical Chemistry. 99: 2177-2185. DOI: 10.1021/J100007A057  0.617
1994 Gulukota K, Wolynes PG. Statistical mechanics of kinetic proofreading in protein folding in vivo. Proceedings of the National Academy of Sciences of the United States of America. 91: 9292-6. PMID 7937758 DOI: 10.1073/Pnas.91.20.9292  0.455
1994 Saven JG, Wang J, Wolynes PG. Kinetics of protein folding: The dynamics of globally connected rough energy landscapes with biases Journal of Chemical Physics. 101: 11037-11043. DOI: 10.1063/1.467855  0.769
1994 Schofield SA, Wolynes PG. Rate theory and non-RRKM quantum dynamics described by local random matrix models Chemical Physics Letters. 217: 497-502. DOI: 10.1016/0009-2614(93)E1439-N  0.337
1994 Saven JG, Wang J, Wolynes PG. Kinetics of protein folding: The dynamics of globally connected rough energy landscapes with biases The Journal of Chemical Physics. 101: 11037-11043.  0.742
1993 Goldstein RA, Katzenellenbogen JA, Luthey-Schulten ZA, Seielstad DA, Wolynes PG. Three-dimensional model for the hormone binding domains of steroid receptors. Proceedings of the National Academy of Sciences of the United States of America. 90: 9949-53. PMID 8234340 DOI: 10.1073/Pnas.90.21.9949  0.683
1993 Gentile AC, Schofield SA, Wolynes PG. Non‐Rice–Ramsperger–Kassel–Marcus dynamics and the statistics of reaction rates in chaotic systems The Journal of Chemical Physics. 98: 7898-7902. DOI: 10.1063/1.464545  0.31
1993 Schofield SA, Wolynes PG. A scaling perspective on quantum energy flow in molecules The Journal of Chemical Physics. 98: 1123-1131. DOI: 10.1063/1.464337  0.33
1993 Onuchic JN, Wolynes PG. Energy landscapes, glass transitions, and chemical reaction dynamics in biomolecular or solvent environment The Journal of Chemical Physics. 98: 2218-2224. DOI: 10.1063/1.464201  0.545
1993 Wong CF, Zheng C, Shen J, McCammon JA, Wolynes PG. Cytochrome c: a molecular proving ground for computer simulations The Journal of Physical Chemistry. 97: 3100-3110. DOI: 10.1021/J100115A008  0.422
1992 Bohr HG, Wolynes PG. Initial events of protein folding from an information-processing viewpoint. Physical Review. A. 46: 5242-5248. PMID 9908746 DOI: 10.1103/Physreva.46.5242  0.37
1992 Goldstein RA, Luthey-Schulten ZA, Wolynes PG. Optimal protein-folding codes from spin-glass theory. Proceedings of the National Academy of Sciences of the United States of America. 89: 4918-22. PMID 1594594 DOI: 10.1073/Pnas.89.11.4918  0.68
1992 Goldstein RA, Luthey-Schulten ZA, Wolynes PG. Protein tertiary structure recognition using optimized Hamiltonians with local interactions. Proceedings of the National Academy of Sciences of the United States of America. 89: 9029-33. PMID 1409599 DOI: 10.1073/Pnas.89.19.9029  0.708
1992 IRWIN J, BOHR H, MOCHIZUKI K, WOLYNES P. CLASSIFICATION AND PREDICTION OF PROTEIN SIDE-CHAINS BY NEURAL NETWORK TECHNIQUES International Journal of Neural Systems. 3: 177-182. DOI: 10.1142/S0129065792000504  0.352
1992 Tanimura Y, Wolynes PG. The interplay of tunneling, resonance, and dissipation in quantum barrier crossing: A numerical study The Journal of Chemical Physics. 96: 8485-8496. DOI: 10.1063/1.462301  0.489
1992 Wade RC, Bohr H, Wolynes PG. Prediction of water binding sites on proteins by neural networks Journal of the American Chemical Society. 114: 8284-8285. DOI: 10.1021/Ja00047A046  0.306
1991 Tanimura Y, Wolynes PG. Quantum and classical Fokker-Planck equations for a Gaussian-Markovian noise bath. Physical Review. A. 43: 4131-4142. PMID 9905511 DOI: 10.1103/Physreva.43.4131  0.459
1991 Friedrichs MS, Goldstein RA, Wolynes PG. Generalized protein tertiary structure recognition using associative memory Hamiltonians. Journal of Molecular Biology. 222: 1013-34. PMID 1762143 DOI: 10.1016/0022-2836(91)90591-S  0.583
1991 Frauenfelder H, Sligar SG, Wolynes PG. The energy landscapes and motions of proteins. Science (New York, N.Y.). 254: 1598-603. PMID 1749933 DOI: 10.1126/Science.1749933  0.422
1991 Zheng C, McCammon JA, Wolynes PG. Quantum simulations of conformation reorganization in the electron transfer reactions of tuna cytochrome c Chemical Physics. 158: 261-270. DOI: 10.1016/0301-0104(91)87070-C  0.481
1990 Logan DE, Wolynes PG. Quantum localization and energy flow in many-dimensional Fermi resonant systems The Journal of Chemical Physics. 93: 4994-5012. DOI: 10.1063/1.458637  0.338
1990 Friedrichs MS, Wolynes PG. Molecular dynamics of associative memory hamiltonians for protein tertiary structure recognition Tetrahedron Computer Methodology. 3: 175-190. DOI: 10.1016/0898-5529(90)90051-9  0.386
1990 Bryngelson JD, Wolynes PG. A simple statistical field theory of heteropolymer collapse with application to protein folding Biopolymers. 30: 177-188. DOI: 10.1002/Bip.360300117  0.4
1989 Bryngelson JD, Wolynes PG. Intermediates and barrier crossing in a random energy model (with applications to protein folding) The Journal of Physical Chemistry. 93: 6902-6915. DOI: 10.1021/J100356A007  0.34
1988 Zheng C, Wong CF, McCammon JA, Wolynes PG. Quantum simulation of ferrocytochrome c. Nature. 334: 726-8. PMID 2842687 DOI: 10.1038/334726A0  0.475
1988 Ohmine I, Tanaka H, Wolynes PG. Large local energy fluctuations in water. II. Cooperative motions and fluctuations The Journal of Chemical Physics. 89: 5852-5860. DOI: 10.1063/1.455536  0.355
1988 Mccammon JA, Harvey SC, Wolynes PG. Dynamics of Proteins and Nucleic Acids Physics Today. 41: 105-106. DOI: 10.1063/1.2811564  0.392
1988 Onuchic JN, Wolynes PG. Classical and quantum pictures of reaction dynamics in condensed matter: resonances, dephasing, and all that The Journal of Physical Chemistry. 92: 6495-6503. DOI: 10.1021/J100334A007  0.5
1987 Bryngelson JD, Wolynes PG. Spin glasses and the statistical mechanics of protein folding. Proceedings of the National Academy of Sciences of the United States of America. 84: 7524-8. PMID 3478708 DOI: 10.1073/Pnas.84.21.7524  0.405
1987 Kirkpatrick TR, Wolynes PG. Connections between some kinetic and equilibrium theories of the glass transition Physical Review A. 35: 3072-3080. DOI: 10.1103/Physreva.35.3072  0.314
1987 Wolynes PG. Linearized microscopic theories of nonequilibrium solvation The Journal of Chemical Physics. 86: 5133-5136. DOI: 10.1063/1.452632  0.339
1987 Hall RW, Wolynes PG. The aperiodic crystal picture and free energy barriers in glasses The Journal of Chemical Physics. 86: 2943-2948. DOI: 10.1063/1.452045  0.549
1987 Cline RE, Wolynes PG. Stochastic dynamic models of curve crossing phenomena in condensed phases The Journal of Chemical Physics. 86: 3836-3844. DOI: 10.1063/1.451942  0.317
1986 Hall RW, Wolynes PG. Quantum Monte Carlo study of a lattice-atom model for excitonic fluids. Physical Review. B, Condensed Matter. 33: 7879-7881. PMID 9938177 DOI: 10.1103/Physrevb.33.7879  0.525
1986 Logan DE, Wolynes PG. Anderson localization in topologically disordered systems: The effects of band structure The Journal of Chemical Physics. 85: 937-948. DOI: 10.1063/1.451249  0.333
1986 Hall RW, Wolynes PG. G. N. Lewis' atom and quantum Monte Carlo studies of liquids Journal of Statistical Physics. 43: 935-948. DOI: 10.1007/Bf02628321  0.57
1985 Frauenfelder H, Wolynes PG. Rate theories and puzzles of hemeprotein kinetics. Science (New York, N.Y.). 229: 337-45. PMID 4012322 DOI: 10.1126/Science.4012322  0.368
1985 Behrman EC, Wolynes PG. Dynamics of a two‐level system coupled to a dissipative bath: Comparisons of analytical theories with Monte Carlo simulation The Journal of Chemical Physics. 83: 5863-5869. DOI: 10.1063/1.449861  0.334
1985 Behrman EC, Jongeward GA, Wolynes PG. An optimized random phase approximation for the dynamics of tunneling systems in condensed phases The Journal of Chemical Physics. 83: 668-673. DOI: 10.1063/1.449535  0.305
1985 Hall RW, Wolynes PG. Solvent influence on atomic spectra: The effect of finite size The Journal of Chemical Physics. 83: 3214-3221. DOI: 10.1063/1.449179  0.483
1985 Wahlstrand KJ, Wolynes PG. Simulation of a relativistic soliton model of crystalline polymer dynamics The Journal of Chemical Physics. 82: 5259-5263. DOI: 10.1063/1.448649  0.316
1983 Calef DF, Wolynes PG. Classical solvent dynamics and electron transfer. II. Molecular aspects The Journal of Chemical Physics. 78: 470-482. DOI: 10.1063/1.444472  0.309
1982 Chandler D, Schweizer KS, Wolynes PG. Electronic States of a Topologically Disordered System: Exact Solution of the Mean Spherical Model for Liquids Physical Review Letters. 49: 1100-1103. DOI: 10.1103/Physrevlett.49.1100  0.438
1981 Schweizer KS, Stratt RM, Chandler D, Wolynes PG. Convenient and accurate discretized path integral methods for equilibrium quantum mechanical calculations The Journal of Chemical Physics. 75: 1347-1364. DOI: 10.1063/1.442141  0.47
1981 Hynes JT, Wolynes PG. A continuum theory for quadrupole relaxation of ions in solution The Journal of Chemical Physics. 75: 395-401. DOI: 10.1063/1.441796  0.492
1981 Chandler D, Wolynes PG. Exploiting the isomorphism between quantum theory and classical statistical mechanics of polyatomic fluids The Journal of Chemical Physics. 74: 4078-4095. DOI: 10.1063/1.441588  0.496
1980 Berne BJ, Skinner JL, Wolynes PG. Impulsive stochastic models of molecular relaxation and isomerization reactions The Journal of Chemical Physics. 73: 4314-4320. DOI: 10.1063/1.440713  0.679
1980 Skinner JL, Wolynes PG. Solitons, defect diffusion, and dielectric relaxation of polymers The Journal of Chemical Physics. 73: 4022-4025. DOI: 10.1063/1.440630  0.61
1980 Skinner JL, Wolynes PG. Transition state and Brownian motion theories of solitons The Journal of Chemical Physics. 73: 4015-4021. DOI: 10.1063/1.440629  0.631
1980 Skinner JL, Wolynes PG. General kinetic models of activated processes in condensed phases The Journal of Chemical Physics. 72: 4913-4927. DOI: 10.1063/1.439776  0.622
1979 McCammon JA, Wolynes PG, Karplus M. Picosecond dynamics of tyrosine side chains in proteins. Biochemistry. 18: 927-42. PMID 427100 DOI: 10.1021/Bi00573A001  0.523
1979 Skinner JL, Wolynes PG. Derivation of Smoluchowski equations with corrections for Fokker-Planck and BGK collision models Physica a: Statistical Mechanics and Its Applications. 96: 561-572. DOI: 10.1016/0378-4371(79)90013-X  0.583
1978 Skinner JL, Wolynes PG. Relaxation processes and chemical kinetics The Journal of Chemical Physics. 69: 2143-2150. DOI: 10.1063/1.436814  0.595
1978 Schulten K, Wolynes PG. Semiclassical description of electron spin motion in radicals including the effect of electron hopping The Journal of Chemical Physics. 68: 3292-3297. DOI: 10.1063/1.436135  0.315
1977 Wolynes PG, Deutch JM. Dynamical orientation correlations in solution The Journal of Chemical Physics. 67: 733-741. DOI: 10.1063/1.434881  0.544
1977 Montgomery JA, Berne BJ, Wolynes PG, Deutch JM. On the effects of translation–rotation coupling on hydrodynamic diffusion tensors The Journal of Chemical Physics. 67: 5971-5972. DOI: 10.1063/1.434773  0.569
1977 McCammon JA, Wolynes PG. Nonsteady hydrodynamics of biopolymer motions The Journal of Chemical Physics. 66: 1452-1456. DOI: 10.1063/1.434107  0.44
1976 Wolynes PG, Deutch JM. Hydrodynamic boundary conditions and polymer dynamics The Journal of Chemical Physics. 65: 2030-2031. DOI: 10.1063/1.433259  0.508
1976 Wolynes PG, Deutch JM. Slip boundary conditions and the hydrodynamic effect on diffusion controlled reactions The Journal of Chemical Physics. 65: 450-454. DOI: 10.1063/1.432788  0.531
Low-probability matches (unlikely to be authored by this person)
1983 Calef DF, Wolynes PG. Smoluchowski–Vlasov theory of charge solvation dynamics The Journal of Chemical Physics. 78: 4145-4153. DOI: 10.1063/1.445091  0.299
2020 Liman J, Bueno C, Eliaz Y, Schafer NP, Waxham MN, Wolynes PG, Levine H, Cheung MS. The role of the Arp2/3 complex in shaping the dynamics and structures of branched actomyosin networks. Proceedings of the National Academy of Sciences of the United States of America. PMID 32354995 DOI: 10.1073/Pnas.1922494117  0.299
1987 Wolynes PG. Imaginary time path integral Monte Carlo route to rate coefficients for nonadiabatic barrier crossing The Journal of Chemical Physics. 87: 6559-6561. DOI: 10.1063/1.453440  0.298
1979 Colonomos P, Wolynes PG. Molecular theory of solvated ion dynamics. II. Fluid structure and ionic mobilities The Journal of Chemical Physics. 71: 2644-2651. DOI: 10.1063/1.438621  0.298
2006 Shen T, Wolynes PG. Statistical mechanics of a cat's cradle New Journal of Physics. 8. DOI: 10.1088/1367-2630/8/11/273  0.295
2012 Wisitsorasak A, Wolynes PG. On the strength of glasses. Proceedings of the National Academy of Sciences of the United States of America. 109: 16068-72. PMID 22988070 DOI: 10.1073/Pnas.1214130109  0.294
2020 Thadani NN, Zhou Q, Gamas KR, Butler S, Bueno C, Schafer NP, Morcos F, Wolynes PG, Suh J. Frustration and Direct Coupling Analyses to Predict Formation and Function of Adeno-Associated Virus. Biophysical Journal. PMID 33359833 DOI: 10.1016/j.bpj.2020.12.018  0.293
2005 Schmalian J, Wolynes P. Electronic Mayonnaise: Uniting the Sciences of “Hard” and “Soft” Matter Mrs Bulletin. 30: 433-436. DOI: 10.1557/Mrs2005.119  0.293
1977 Wolynes PG, McCammon JA. Hydrodynamic Effect on the Coagulation of Porous Biopolymers Macromolecules. 10: 86-87. DOI: 10.1021/ma60055a017  0.293
1983 Behrman EC, Jongeward GA, Wolynes PG. A Monte Carlo approach for the real time dynamics of tunneling systems in condensed phases The Journal of Chemical Physics. 79: 6277-6281. DOI: 10.1063/1.445732  0.292
2013 Wang S, Wolynes P. Active Contractility and Motor-Driven Effective Interactions in a Model Cytoskeleton Biophysical Journal. 104: 138a. DOI: 10.1016/J.Bpj.2012.11.788  0.292
2013 Wisitsorasak A, Wolynes PG. Fluctuating mobility generation and transport in glasses. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 022308. PMID 24032834 DOI: 10.1103/Physreve.88.022308  0.292
1987 Logan DE, Wolynes PG. Localizability and dephasing of dipolar excitons in topologically disordered systems The Journal of Chemical Physics. 87: 7199-7207. DOI: 10.1063/1.453363  0.292
2005 Walczak AM, Sasai M, Wolynes PG. Self-consistent proteomic field theory of stochastic gene switches. Biophysical Journal. 88: 828-50. PMID 15542546 DOI: 10.1529/Biophysj.104.050666  0.291
2001 SCHMALIAN J, WESTFAHL H, WOLYNES PG. ON THE NUMBER OF METASTABLE STATES IN A STRIPE GLASS International Journal of Modern Physics B. 15: 3292-3295. DOI: 10.1142/S0217979201007646  0.29
2017 Wisitsorasak A, Wolynes PG. Dynamical theory of shear bands in structural glasses. Proceedings of the National Academy of Sciences of the United States of America. PMID 28108571 DOI: 10.1073/Pnas.1620399114  0.29
2007 Gruebele M, Wolynes PG. Quantizing Ulam's control conjecture. Physical Review Letters. 99: 060201. PMID 17930806 DOI: 10.1103/Physrevlett.99.060201  0.289
1994 Schofield SA, Wolynes PG. Quantum dynamics and microcanonical rate theory The Journal of Chemical Physics. 100: 350-356. DOI: 10.1063/1.466948  0.288
2000 Schmalian J, Wolynes PG. Stripe glasses: self-generated randomness in a uniformly frustrated system Physical Review Letters. 85: 836-9. PMID 10991411 DOI: 10.1103/Physrevlett.85.836  0.288
1979 Hubbard JB, Colonomos P, Wolynes PG. Molecular theory of solvated ion dynamics. III. The kinetic dielectric decrement The Journal of Chemical Physics. 71: 2652-2661. DOI: 10.1063/1.438622  0.288
1990 Evensky DA, Scalettar RT, Wolynes PG. Localization and dephasing effects in a time-dependent Anderson Hamiltonian The Journal of Physical Chemistry. 94: 1149-1154. DOI: 10.1021/J100366A027  0.287
2020 Gu X, Schafer NP, Wang Q, Song SS, Chen M, Waxham MN, Wolynes PG. Exploring the F-actin/CPEB3 interaction and its possible role in the molecular mechanism of long-term memory. Proceedings of the National Academy of Sciences of the United States of America. PMID 32848053 DOI: 10.1073/Pnas.2012964117  0.287
2004 Wu S, Schmalian J, Kotliar G, Wolynes PG. Solution of local-field equations for self-generated glasses Physical Review B - Condensed Matter and Materials Physics. 70: 024207-1-024207-11. DOI: 10.1103/Physrevb.70.024207  0.287
2012 Wang S, Wolynes PG. Tensegrity and motor-driven effective interactions in a model cytoskeleton. The Journal of Chemical Physics. 136: 145102. PMID 22502548 DOI: 10.1063/1.3702583  0.287
1999 Wang J, Wolynes P. Intermittency of activated events in single molecules: The reaction diffusion description The Journal of Chemical Physics. 110: 4812-4819. DOI: 10.1063/1.478369  0.285
2015 Bai X, Wolynes PG. On the hydrodynamics of swimming enzymes. The Journal of Chemical Physics. 143: 165101. PMID 26520553 DOI: 10.1063/1.4933424  0.285
2004 Shen T, Wolynes PG. Stability and dynamics of crystals and glasses of motorized particles. Proceedings of the National Academy of Sciences of the United States of America. 101: 8547-50. PMID 15173584 DOI: 10.1073/Pnas.0402602101  0.283
2019 Wang J, Wolynes P. Intermittency of single molecule reaction dynamics in fluctuating environments. Physical Review Letters. 74: 4317-4320. PMID 10058470 DOI: 10.1103/Physrevlett.74.4317  0.282
1993 Evensky DA, Wolynes PG. Transport of dipolar excitons in disordered systems Chemical Physics Letters. 209: 185-189. DOI: 10.1016/0009-2614(93)87221-N  0.282
1997 Takada S, Wolynes PG. Statics, metastable states, and barriers in protein folding: A replica variational approach Physical Review E. 55: 4562-4577. DOI: 10.1103/Physreve.55.4562  0.282
2012 Wang S, Wolynes PG. Active contractility in actomyosin networks. Proceedings of the National Academy of Sciences of the United States of America. 109: 6446-51. PMID 22493220 DOI: 10.1073/Pnas.1204205109  0.282
2011 Wang S, Wolynes PG. Communication: Effective temperature and glassy dynamics of active matter. The Journal of Chemical Physics. 135: 051101. PMID 21823683 DOI: 10.1063/1.3624753  0.28
1978 Hubbard JB, Wolynes PG. Dielectric friction and molecular reorientation The Journal of Chemical Physics. 69: 998. DOI: 10.1063/1.436652  0.28
1995 Schofield SA, Wolynes PG, Wyatt RE. Computational study of many-dimensional quantum energy flow: From action diffusion to localization. Physical Review Letters. 74: 3720-3723. PMID 10058280 DOI: 10.1103/Physrevlett.74.3720  0.28
2011 Wang S, Wolynes PG. On the spontaneous collective motion of active matter. Proceedings of the National Academy of Sciences of the United States of America. 108: 15184-9. PMID 21876141 DOI: 10.1073/Pnas.1112034108  0.279
2003 Sasai M, Wolynes PG. Stochastic gene expression as a many-body problem. Proceedings of the National Academy of Sciences of the United States of America. 100: 2374-9. PMID 12606710 DOI: 10.1073/Pnas.2627987100  0.279
1978 Wolynes PG. Molecular theory of solvated ion dynamics The Journal of Chemical Physics. 68: 473-483. DOI: 10.1063/1.435777  0.279
1998 Wolynes PG. Computational biomolecular science. Proceedings of the National Academy of Sciences of the United States of America. 95: 5848. PMID 9600882 DOI: 10.1073/Pnas.95.11.5848  0.276
1994 Wang J, Wolynes P. Survival paths for reaction dynamics in fluctuating environments Chemical Physics. 180: 141-156. DOI: 10.1016/0301-0104(93)E0427-W  0.275
2001 Westfahl H, Schmalian J, Wolynes PG. Self-generated randomness, defect wandering, and viscous flow in stripe glasses Physical Review B. 64. DOI: 10.1103/Physrevb.64.174203  0.274
2009 Wolynes PG. Some quantum weirdness in physiology. Proceedings of the National Academy of Sciences of the United States of America. 106: 17247-8. PMID 19815521 DOI: 10.1073/Pnas.0909421106  0.274
1981 Levy RM, Karplus M, Wolynes PG. NMR relaxation parameters in molecules with internal motion: exact Langevin trajectory results compared with simplified relaxation models Journal of the American Chemical Society. 103: 5998-6011. DOI: 10.1021/Ja00410A002  0.274
2019 Wang Q, Chen M, Schafer NP, Bueno C, Song SS, Hudmon A, Wolynes PG, Waxham MN, Cheung MS. Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines. Proceedings of the National Academy of Sciences of the United States of America. PMID 31455737 DOI: 10.1073/Pnas.1911452116  0.272
1988 Cline RE, Wolynes PG. Monte Carlo methods for real‐time quantum dynamics of dissipative systems The Journal of Chemical Physics. 88: 4334-4350. DOI: 10.1063/1.453793  0.271
1987 Wolynes PG. Dissipation, tunneling, and adiabaticity criteria for curve crossing problems in the condensed phase The Journal of Chemical Physics. 86: 1957-1966. DOI: 10.1063/1.452146  0.271
2009 Walczak AM, Wolynes PG. Gene-gene cooperativity in small networks. Biophysical Journal. 96: 4525-41. PMID 19486675 DOI: 10.1016/J.Bpj.2009.03.005  0.268
1987 Kuki A, Wolynes PG. Electron tunneling paths in proteins. Science (New York, N.Y.). 236: 1647-52. PMID 3603005 DOI: 10.1126/Science.3603005  0.267
1997 Takada S, Wolynes PG. Glassy Dynamics of Random Heteropolymers Progress of Theoretical Physics Supplement. 126: 49-52. DOI: 10.1143/Ptps.126.49  0.266
1993 Wang J, Wolynes P. Passage through fluctuating geometrical bottlenecks. The general Gaussian fluctuating case Chemical Physics Letters. 212: 427-433. DOI: 10.1016/0009-2614(93)87224-Q  0.264
1983 Calef DF, Wolynes PG. Classical solvent dynamics and electron transfer. 1. Continuum theory The Journal of Physical Chemistry. 87: 3387-3400. DOI: 10.1021/J100241A008  0.264
1988 Morgan JD, Wolynes PG. The supersymmetric diffusional influence functional: General theory The Journal of Chemical Physics. 88: 7781-7790. DOI: 10.1063/1.454291  0.256
2017 Berrios E, Gruebele M, Wolynes PG. Quantum controlled fusion Chemical Physics Letters. 683: 216-221. DOI: 10.1016/J.Cplett.2017.02.045  0.253
1983 Jongeward GA, Wolynes PG. Renormalization group studies of tunneling systems in the condensed phase The Journal of Chemical Physics. 79: 3517-3528. DOI: 10.1063/1.446205  0.252
2019 Xu Y, Safari MS, Ma W, Schafer NP, Wolynes PG, Vekilov PG. Steady, Symmetric, and Reversible Growth and Dissolution of Individual Amyloid-β Fibrils. Acs Chemical Neuroscience. PMID 31099555 DOI: 10.1021/Acschemneuro.9B00179  0.248
1987 Mason BA, Hess K, Cline RE, Wolynes PG. A new technique for the calculation of real-time path integrals and applications to electron transport Superlattices and Microstructures. 3: 421-428. DOI: 10.1016/0749-6036(87)90217-5  0.248
2000 Laughlin RB, Pines D, Schmalian J, Stojkovic BP, Wolynes P. The middle way. Proceedings of the National Academy of Sciences of the United States of America. 97: 32-7. PMID 10618366 DOI: 10.1073/Pnas.97.1.32  0.247
1987 Morgan JD, Wolynes PG. Adiabaticity of electron transfer at an electrode The Journal of Physical Chemistry. 91: 874-883. DOI: 10.1021/J100288A023  0.242
1984 Logan DE, Wolynes PG. Self-consistent theory of localization in topologically disordered systems Physical Review B. 29: 6560-6562. DOI: 10.1103/Physrevb.29.6560  0.238
2008 Kwac K, Wolynes PG. Protein structure prediction using an associated memory Hamiltonian and all-atom molecular dynamics simulations Bulletin of the Korean Chemical Society. 29: 2172-2182.  0.238
1981 Wolynes PG. Quantum Theory of Activated Events in Condensed Phases Physical Review Letters. 47: 968-971. DOI: 10.1103/Physrevlett.47.968  0.231
1980 Wolynes PG. Dynamics of Electrolyte Solutions Annual Review of Physical Chemistry. 31: 345-376. DOI: 10.1146/Annurev.Pc.31.100180.002021  0.228
2022 Gu X, Schafer NP, Bueno C, Lu W, Wolynes PG. A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines. Plos Computational Biology. 18: e1010657. PMID 36346822 DOI: 10.1371/journal.pcbi.1010657  0.228
2022 Chen X, Chen M, Wolynes PG, Wittung-Stafshede P, Gray HB. Frustration Dynamics and Electron-Transfer Reorganization Energies in Wild-Type and Mutant Azurins. Journal of the American Chemical Society. PMID 35171591 DOI: 10.1021/jacs.1c13454  0.225
1992 Sasai M, Wolynes PG. Unified theory of collapse, folding, and glass transitions in associative-memory Hamiltonian models of proteins. Physical Review. A. 46: 7979-7997. PMID 9908149  0.224
1982 Wolynes PG. Book review:Functional integration: Theory and applications Journal of Statistical Physics. 28: 409-410. DOI: 10.1007/Bf01012615  0.224
1987 Logan DE, Wolynes PG. Dephasing and Anderson localization in topologically disordered systems. Physical Review. B, Condensed Matter. 36: 4135-4147. PMID 9943391 DOI: 10.1103/Physrevb.36.4135  0.218
1990 Sasai M, Wolynes PG. Molecular theory of associative memory Hamiltonian models of protein folding. Physical Review Letters. 65: 2740-2743. PMID 10042680 DOI: 10.1103/PhysRevLett.65.2740  0.217
1985 Logan DE, Wolynes PG. Anderson localization in topologically disordered systems. Physical Review. B, Condensed Matter. 31: 2437-2450. PMID 9936057 DOI: 10.1103/Physrevb.31.2437  0.216
1994 Frauenfelder H, Wolynes PG. Biomolecules: Where the Physics of Complexity and Simplicity Meet Physics Today. 47: 58-64. DOI: 10.1063/1.881414  0.216
1992 Wolynes PG. Randomness and complexity in chemical physics Accounts of Chemical Research. 25: 513-519. DOI: 10.1021/Ar00023A005  0.216
1996 Wolynes PG. A fresh glass of frozen chaos Nature. 382: 495-496. DOI: 10.1038/382495A0  0.215
1976 Wolynes PG. Osmotic effects near the critical point The Journal of Physical Chemistry. 80: 1570-1572. DOI: 10.1021/J100555A011  0.213
1980 Calef DF, Wolynes PG. Flow birefringence and hydrodynamic boundary conditions The Journal of Chemical Physics. 72: 535-540. DOI: 10.1063/1.438939  0.212
2023 Zhang C, Gruebele M, Logan DE, Wolynes PG. Surface crossing and energy flow in many-dimensional quantum systems. Proceedings of the National Academy of Sciences of the United States of America. 120: e2221690120. PMID 36821585 DOI: 10.1073/pnas.2221690120  0.21
1976 Wolynes PG. Hydrodynamic boundary conditions and mode-mode coupling theory Physical Review A. 13: 1235-1250. DOI: 10.1103/Physreva.13.1235  0.21
1993 Caliri A, Bohr H, Wolynes P. Two-dimensional chain folding-random energy interaction Physics Letters A. 183: 327-331. DOI: 10.1016/0375-9601(93)90465-C  0.208
2023 Sahin C, Motso A, Gu X, Feyrer H, Lama D, Arndt T, Rising A, Gese GV, Hällberg BM, Marklund EG, Schafer NP, Petzold K, Teilum K, Wolynes PG, Landreh M. Mass Spectrometry of RNA-Binding Proteins during Liquid-Liquid Phase Separation Reveals Distinct Assembly Mechanisms and Droplet Architectures. Journal of the American Chemical Society. 145: 10659-10668. PMID 37145883 DOI: 10.1021/jacs.3c00932  0.199
1975 Wolynes PG. Bounds for convective contributions to transport coefficients Physical Review A. 11: 1700-1705. DOI: 10.1103/Physreva.11.1700  0.198
1985 Cooper K, Jakobsson E, Wolynes P. The theory of ion transport through membrane channels. Progress in Biophysics and Molecular Biology. 46: 51-96. PMID 2410952 DOI: 10.1016/0079-6107(85)90012-4  0.195
2022 Zhang Y, Chen M, Lu J, Li W, Wolynes PG, Wang W. Frustration and the Kinetic Repartitioning Mechanism of Substrate Inhibition in Enzyme Catalysis. The Journal of Physical Chemistry. B. PMID 36044985 DOI: 10.1021/acs.jpcb.2c03832  0.193
2016 Trelle MB, Ramsey KM, Lee TC, Zheng W, Lamboy J, Wolynes PG, Deniz A, Komives EA. Binding of NFκB Appears to Twist the Ankyrin Repeat Domain of IκBα. Biophysical Journal. 110: 887-95. PMID 26910425 DOI: 10.1016/J.Bpj.2016.01.001  0.192
2022 Chen X, Chen M, Wolynes PG. Exploring the Interplay between Disordered and Ordered Oligomer Channels on the Aggregation Energy Landscapes of α-Synuclein. The Journal of Physical Chemistry. B. 126: 5250-5261. PMID 35815598 DOI: 10.1021/acs.jpcb.2c03676  0.181
1991 Freeman G, Fleming GR, Wolynes PG. Onsager's Outside‐in Intuition Physics Today. 44: 120-120. DOI: 10.1063/1.2810010  0.181
2007 Wolynes PG. Lectures on biomolecular energy landscapes Proceedings of the International School of Physics "Enrico Fermi". 165: 27-45.  0.18
2015 Ashfold M, Parker D, Brown W, Nussinov R, Wolynes PG, Messinger J, Lubitz W, Shen JR, Koper MTM, Iwasawa Y. PCCP-A society journal going from strength to strength Physical Chemistry Chemical Physics. 17: 23-25. DOI: 10.1039/C4Cp90182G  0.178
2021 Nde J, Zhang P, Ezerski JC, Lu W, Knapp K, Wolynes PG, Cheung MS. Coarse-Grained Modeling and Molecular Dynamics Simulations of Ca-Calmodulin. Frontiers in Molecular Biosciences. 8: 661322. PMID 34504868 DOI: 10.3389/fmolb.2021.661322  0.172
2022 Bueno C, Liman J, Schafer NP, Cheung MS, Wolynes PG. A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks. Plos Computational Biology. 18: e1010105. PMID 35533192 DOI: 10.1371/journal.pcbi.1010105  0.167
2018 Schuler B, Szabo A, Wolynes PG. Tribute to William A. Eaton. The Journal of Physical Chemistry. B. 122: 10971-10973. PMID 30986080 DOI: 10.1021/Acs.Jpcb.8B08745  0.165
2021 Chen W, Lu W, Wolynes PG, Komives EA. Single-molecule conformational dynamics of a transcription factor reveals a continuum of binding modes controlling association and dissociation. Nucleic Acids Research. PMID 34614173 DOI: 10.1093/nar/gkab874  0.165
2013 Wolynes PG. A scientific memoir. The Journal of Physical Chemistry. B. 117: 12672-5. PMID 24152074 DOI: 10.1021/Jp407073N  0.165
2001 Schmalian J, Wolynes PG. Reply: Schmalian and Wolynes Physical Review Letters. 86. DOI: 10.17877/De290R-7092  0.161
2001 Schmalian J, Wolynes PG. Schmalian and Wolynes Reply: Physical Review Letters. 86: 3456-3456. DOI: 10.1103/Physrevlett.86.3456  0.161
2021 Gu X, Schafer NP, Wolynes PG. Vectorial channeling as a mechanism for translational control by functional prions and condensates. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34795061 DOI: 10.1073/pnas.2115904118  0.16
2021 Trovato F, Trylska J, Bond PJ, Wolynes PG. Editorial: Combining Simulations, Theory, and Experiments into Multiscale Models of Biological Events. Frontiers in Molecular Biosciences. 8: 797754. PMID 34881293 DOI: 10.3389/fmolb.2021.797754  0.146
2023 Wolynes PG, Gruebele M. Quantum scrambling across an energy barrier. Proceedings of the National Academy of Sciences of the United States of America. 120: e2319705120. PMID 38109553 DOI: 10.1073/pnas.2319705120  0.136
2022 Baughman HER, Narang D, Chen W, Villagrán Suárez AC, Lee J, Bachochin MJ, Gunther TR, Wolynes PG, Komives EA. An intrinsically disordered transcription activation domain increases the DNA binding affinity and reduces the specificity of NFκB p50/RelA. The Journal of Biological Chemistry. 102349. PMID 35934050 DOI: 10.1016/j.jbc.2022.102349  0.134
1982 LEVY RM, KARPLUS M, WOLYNES PG. ChemInform Abstract: NMR RELAXATION PARAMETERS IN MOLECULES WITH INTERNAL MOTION: EXACT LANGEVIN TRAJECTORY RESULTS COMPARED WITH SIMPLIFIED RELAXATION MODELS Chemischer Informationsdienst. 13. DOI: 10.1002/chin.198203044  0.13
2002 Eastwood MP, Wolynes PG. Droplets and the configurational entropy crisis for random first-order transitions Europhysics Letters (Epl). 60: 587-593. DOI: 10.1209/epl/i2002-00259-y  0.125
2002 Metzler R, Wolynes PG. Number fluctuations and the threshold model of kinetic switches Chemical Physics. 284: 469-479. DOI: 10.1016/S0301-0104(02)00674-2  0.121
1985 Wolynes P. Microscopic theory of aperiodic crystals: Approaches for the hard sphere glass transition Journal of Non-Crystalline Solids. 75: 443-448. DOI: 10.1016/0022-3093(85)90255-8  0.117
1999 Bai C, Wang C, Xie XS, Wolynes PG. Single molecule physics and chemistry. Proceedings of the National Academy of Sciences of the United States of America. 96: 11075-6. PMID 10500130 DOI: 10.1073/pnas.96.20.11075  0.111
1984 Chiles RA, Jongeward GA, Bolton MA, Wolynes PG. A Monte Carlo approach to chemical bonding in condensed phases The Journal of Chemical Physics. 81: 2039-2046. DOI: 10.1063/1.447826  0.095
1990 Fleming GR, Wolynes PG. Chemical Dynamics in Solution Physics Today. 43: 36-43. DOI: 10.1063/1.881234  0.088
2022 Vekilov PG, Wolynes PG. Time-Resolved In Situ AFM Measurement of Growth Rates of Aβ40 Fibrils. Methods in Molecular Biology (Clifton, N.J.). 2551: 63-77. PMID 36310197 DOI: 10.1007/978-1-0716-2597-2_6  0.086
1984 Stoessel JP, Wolynes PG. Linear excitations and the stability of the hard sphere glass The Journal of Chemical Physics. 80: 4502-4512. DOI: 10.1063/1.447235  0.073
1997 Okazaki S, Wang J, Schofield SA, Wolynes PG. Quantum twinkling: statistics, coherence and the high order moments of probability amplitudes for systems coupled to quantum baths Chemical Physics. 222: 175-196. DOI: 10.1016/S0301-0104(97)00198-5  0.071
1979 Evans DF, Tominaga T, Hubbard JB, Wolynes PG. Ionic mobility. Theory meets experiment The Journal of Physical Chemistry. 83: 2669-2677. DOI: 10.1021/J100483A025  0.071
2010 Wolynes PG. Gene regulation: Single-molecule chemical physics in a natural context Springer Series in Chemical Physics. 96: 553-560. DOI: 10.1007/978-3-642-02597-6_28  0.069
2012 Wolynes PG, Roberts RE. Molecular interpretation of the infrared water vapor continuum. Applied Optics. 17: 1484-5. PMID 20198007 DOI: 10.1364/AO.17.001484  0.066
1992 Weissman MB, Wolynes PG. Hopfield models and spin-density waves in metallic spin glasses. Physical Review. B, Condensed Matter. 46: 14209-14212. PMID 10003498 DOI: 10.1103/PhysRevB.46.14209  0.038
2012 Dzero M, Schmalian J, Wolynes PG. Glassiness in Uniformly Frustrated Systems Structural Glasses and Supercooled Liquids: Theory, Experiment, and Applications. 193-221. DOI: 10.1002/9781118202470.ch5  0.036
1992 Wolynes PG. Will Computer Design Become a Matter of Evolution? Computers in Physics. 6: 296. DOI: 10.1063/1.4823081  0.03
1981 Hubbard JB, Wolynes PG. An electrohydrodynamic contribution to the Hall effect in electrolyte solutions The Journal of Chemical Physics. 75: 3051-3054. DOI: 10.1063/1.442400  0.029
2011 Kurchan J, Langer JS, Witten TA, Wolynes PG. Scientific interview Dynamical Heterogeneities in Glasses, Colloids, and Granular Media. DOI: 10.1093/acprof:oso/9780199691470.003.0001  0.01
1995 Wolynes PG, Onuchic JN, Thirumalai D. Response. Science (New York, N.Y.). 268: 960-1. PMID 17774212 DOI: 10.1126/science.268.5213.960  0.01
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