Manolo Gouy, Ph.D. - Publications

LBBE LBBE, UMR5558, Université Lyon 1, Université de Lyon, Villeurbanne, Auvergne-Rhône-Alpes, France 
Molecular Evolution; Phylogenetics

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Year Citation  Score
2021 Blanquart S, Groussin M, Le Roy A, Szöllosi GJ, Girard E, Franzetti B, Gouy M, Madern D. Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins : Deciphering Gene Trajectories and Changes in Biochemical Properties. Molecular Biology and Evolution. PMID 33974066 DOI: 10.1093/molbev/msab146  1
2021 Gouy M, Tannier E, Comte N, Parsons DP. Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation. Methods in Molecular Biology (Clifton, N.J.). 2231: 241-260. PMID 33289897 DOI: 10.1007/978-1-0716-1036-7_15  0.8
2020 Lecocq M, Groussin M, Gouy M, Brochier-Armanet C. The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study. Molecular Biology and Evolution. PMID 33450027 DOI: 10.1093/molbev/msaa312  1
2020 Comte N, Morel B, Hasić D, Guéguen L, Boussau B, Daubin V, Penel S, Scornavacca C, Gouy M, Stamatakis A, Tannier E, Parsons DP. Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinformatics (Oxford, England). PMID 33085745 DOI: 10.1093/Bioinformatics/Btaa615  1
2018 Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. Molecular Phylogenetics and Evolution. PMID 29684598 DOI: 10.1016/J.Ympev.2018.04.011  0.6
2016 Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C. RiboDB database: a comprehensive resource for prokaryotic systematics. Molecular Biology and Evolution. PMID 27189556 DOI: 10.1093/Molbev/Msw088  1
2015 Groussin M, Boussau B, Szöllősi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V. Gene acquisitions from bacteria at the origins of major archaeal clades are vastly overestimated. Molecular Biology and Evolution. PMID 26541173 DOI: 10.1093/Molbev/Msv249  1
2015 Flandrois JP, Perrière G, Gouy M. leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences. Bmc Bioinformatics. 16: 251. PMID 26264559 DOI: 10.1186/S12859-015-0692-Z  1
2015 Groussin M, Hobbs JK, Szöll?si GJ, Gribaldo S, Arcus VL, Gouy M. Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees. Molecular Biology and Evolution. 32: 13-22. PMID 25371435 DOI: 10.1093/Molbev/Msu305  1
2015 Bertrand JC, Brochier-Armanet C, Gouy M, Westall F. For three billion years, microorganisms were the only inhabitants of the earth Environmental Microbiology: Fundamentals and Applications. 25-71. DOI: 10.1007/978-94-017-9118-2_4  1
2014 Rochette NC, Brochier-Armanet C, Gouy M. Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes. Molecular Biology and Evolution. 31: 832-45. PMID 24398320 DOI: 10.1093/Molbev/Mst272  1
2013 Groussin M, Boussau B, Charles S, Blanquart S, Gouy M. The molecular signal for the adaptation to cold temperature during early life on Earth. Biology Letters. 9: 20130608. PMID 24046876 DOI: 10.1098/Rsbl.2013.0608  1
2013 Gouy M, Rousselle Y, Bastianelli D, Lecomte P, Bonnal L, Roques D, Efile JC, Rocher S, Daugrois J, Toubi L, Nabeneza S, Hervouet C, Telismart H, Denis M, Thong-Chane A, et al. Experimental assessment of the accuracy of genomic selection in sugarcane. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 2575-86. PMID 23907359 DOI: 10.1007/S00122-013-2156-Z  1
2013 Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, et al. Bio++: efficient extensible libraries and tools for computational molecular evolution. Molecular Biology and Evolution. 30: 1745-50. PMID 23699471 DOI: 10.1093/Molbev/Mst097  1
2013 Groussin M, Boussau B, Gouy M. A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences. Systematic Biology. 62: 523-38. PMID 23475623 DOI: 10.1093/Sysbio/Syt016  1
2013 Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V. Genome-scale coestimation of species and gene trees. Genome Research. 23: 323-30. PMID 23132911 DOI: 10.1101/Gr.141978.112  1
2013 Lebeau A, Gouy M, Daunay MC, Wicker E, Chiroleu F, Prior P, Frary A, Dintinger J. Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 143-58. PMID 22930132 DOI: 10.1007/s00122-012-1969-5  1
2012 Abby SS, Tannier E, Gouy M, Daubin V. Lateral gene transfer as a support for the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 109: 4962-7. PMID 22416123 DOI: 10.1073/Pnas.1116871109  1
2012 Boussau B, Gouy M. What genomes have to say about the evolution of the Earth Gondwana Research. 21: 483-494. DOI: 10.1016/J.Gr.2011.08.002  1
2011 Groussin M, Gouy M. Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea. Molecular Biology and Evolution. 28: 2661-74. PMID 21498602 DOI: 10.1093/Molbev/Msr098  1
2011 Bergeron M, Dauwalder O, Gouy M, Freydiere AM, Bes M, Meugnier H, Benito Y, Etienne J, Lina G, Vandenesch F, Boisset S. Species identification of staphylococci by amplification and sequencing of the tuf gene compared to the gap gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. European Journal of Clinical Microbiology & Infectious Diseases : Official Publication of the European Society of Clinical Microbiology. 30: 343-54. PMID 20967479 DOI: 10.1007/S10096-010-1091-Z  1
2010 Abby SS, Tannier E, Gouy M, Daubin V. Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. Bmc Bioinformatics. 11: 324. PMID 20550700 DOI: 10.1186/1471-2105-11-324  1
2010 Gouy M, Guindon S, Gascuel O. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution. 27: 221-4. PMID 19854763 DOI: 10.1093/Molbev/Msp259  1
2010 Arigon AM, Perrière G, Gouy M. Proposals for classification methods dedicated to biological data International Journal of Biomedical Engineering and Technology. 3: 4-21. DOI: 10.1504/Ijbet.2010.029649  1
2009 Boussau B, Guéguen L, Gouy M. A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies. Evolutionary Bioinformatics Online. 5: 67-79. PMID 19812727 DOI: 10.4137/Ebo.S2242  1
2009 Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G. Databases of homologous gene families for comparative genomics. Bmc Bioinformatics. 10: S3. PMID 19534752 DOI: 10.1186/1471-2105-10-S6-S3  1
2008 Boussau B, Blanquart S, Necsulea A, Lartillot N, Gouy M. Parallel adaptations to high temperatures in the Archaean eon. Nature. 456: 942-5. PMID 19037246 DOI: 10.1038/Nature07393  1
2008 Boussau B, Guéguen L, Gouy M. Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria. Bmc Evolutionary Biology. 8: 272. PMID 18834516 DOI: 10.1186/1471-2148-8-272  1
2008 Dumitrescu O, Tristan A, Meugnier H, Bes M, Gouy M, Etienne J, Lina G, Vandenesch F. Polymorphism of the Staphylococcus aureus Panton-Valentine leukocidin genes and its possible link with the fitness of community-associated methicillin-resistant S. aureus. The Journal of Infectious Diseases. 198: 792-4. PMID 18694339 DOI: 10.1086/590914  1
2008 Gouy M, Chaussidon M. Evolutionary biology: ancient bacteria liked it hot. Nature. 451: 635-6. PMID 18256650 DOI: 10.1038/451635A  1
2008 Arigon AM, Perrière G, Gouy M. Automatic identification of large collections of protein-coding or rRNA sequences. Biochimie. 90: 609-14. PMID 17920750 DOI: 10.1016/J.Biochi.2007.08.006  1
2008 Gouy M, Delmotte S. Remote access to ACNUC nucleotide and protein sequence databases at PBIL. Biochimie. 90: 555-62. PMID 17825976 DOI: 10.1016/J.Biochi.2007.07.003  1
2006 Boussau B, Gouy M. Efficient likelihood computations with nonreversible models of evolution. Systematic Biology. 55: 756-68. PMID 17060197 DOI: 10.1080/10635150600975218  1
2006 Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, Gibert J. Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments. Molecular Ecology. 15: 1797-806. PMID 16689899 DOI: 10.1111/J.1365-294X.2006.02888.X  1
2006 Arigon AM, Perrière G, Gouy M. HoSeqI: automated homologous sequence identification in gene family databases. Bioinformatics (Oxford, England). 22: 1786-7. PMID 16682422 DOI: 10.1093/Bioinformatics/Btl179  1
2006 Lefébure T, Douady CJ, Gouy M, Gibert J. Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation. Molecular Phylogenetics and Evolution. 40: 435-47. PMID 16647275 DOI: 10.1016/J.Ympev.2006.03.014  1
2006 Grassot J, Gouy M, Perrière G, Mouchiroud G. Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains. Molecular Biology and Evolution. 23: 1232-41. PMID 16551648 DOI: 10.1093/Molbev/Msk007  1
2005 Aouacheria A, Brunet F, Gouy M. Phylogenomics of life-or-death switches in multicellular animals: Bcl-2, BH3-Only, and BNip families of apoptotic regulators. Molecular Biology and Evolution. 22: 2395-416. PMID 16093567 DOI: 10.1093/Molbev/Msi234  1
2005 Calteau A, Gouy M, Perrière G. Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea. Journal of Molecular Evolution. 60: 557-65. PMID 15983865 DOI: 10.1007/S00239-004-0094-8  1
2005 Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M. In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant. Oncogene. 24: 6133-42. PMID 15897869 DOI: 10.1038/Sj.Onc.1208745  1
2005 Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics (Oxford, England). 21: 2596-603. PMID 15713731 DOI: 10.1093/Bioinformatics/Bti325  1
2005 Huguet V, Gouy M, Normand P, Zimpfer JF, Fernandez MP. Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity. Molecular Phylogenetics and Evolution. 34: 557-68. PMID 15683929 DOI: 10.1016/J.Ympev.2004.11.018  1
2005 Aurell H, Farge P, Meugnier H, Gouy M, Forey F, Lina G, Vandenesch F, Etienne J, Jarraud S. Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes. Applied and Environmental Microbiology. 71: 282-9. PMID 15640199 DOI: 10.1128/Aem.71.1.282-289.2005  1
2004 Thomarat F, Vivarès CP, Gouy M. Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes. Journal of Molecular Evolution. 59: 780-91. PMID 15599510 DOI: 10.1007/S00239-004-2673-0  1
2004 Aouacheria A, Cluzel C, Lethias C, Gouy M, Garrone R, Exposito JY. Invertebrate data predict an early emergence of vertebrate fibrillar collagen clades and an anti-incest model. The Journal of Biological Chemistry. 279: 47711-9. PMID 15358765 DOI: 10.1074/Jbc.M408950200  1
2004 Le Roux F, Gay M, Lambert C, Nicolas JL, Gouy M, Berthe F. Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences. Diseases of Aquatic Organisms. 58: 143-50. PMID 15109135 DOI: 10.3354/Dao058143  1
2003 Perrière G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deléage G. Integrated databanks access and sequence/structure analysis services at the PBIL. Nucleic Acids Research. 31: 3393-9. PMID 12824334 DOI: 10.1093/Nar/Gkg530  1
2002 Vivarès CP, Gouy M, Thomarat F, Méténier G. Functional and evolutionary analysis of a eukaryotic parasitic genome. Current Opinion in Microbiology. 5: 499-505. PMID 12354558 DOI: 10.1016/S1369-5274(02)00356-9  1
2002 Tahi F, Gouy M, Régnier M. Automatic RNA secondary structure prediction with a comparative approach. Computers & Chemistry. 26: 521-30. PMID 12144180 DOI: 10.1016/S0097-8485(02)00012-8  1
2002 Daubin V, Gouy M, Perrière G. A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Research. 12: 1080-90. PMID 12097345 DOI: 10.1101/Gr.187002  1
2002 Rizzon C, Marais G, Gouy M, Biémont C. Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome. Genome Research. 12: 400-7. PMID 11875027 DOI: 10.1101/Gr.210802  1
2001 Daubin V, Gouy M, Perrière G. Bacterial molecular phylogeny using supertree approach. Genome Informatics. International Conference On Genome Informatics. 12: 155-64. PMID 11791234 DOI: 10.11234/Gi1990.12.155  1
2001 Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, Barbe V, Peyretaillade E, Brottier P, Wincker P, Delbac F, El Alaoui H, Peyret P, Saurin W, Gouy M, et al. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature. 414: 450-3. PMID 11719806 DOI: 10.1038/35106579  1
2001 Aouacheria A, Arnaud E, Venet S, Lalle P, Gouy M, Rigal D, Gillet G. Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis. Oncogene. 20: 5846-55. PMID 11593390 DOI: 10.1038/Sj.Onc.1204740  1
2001 Le Roux F, Lorenzo G, Peyret P, Audemard C, Figueras A, Vivarès C, Gouy M, Berthe F. Molecular evidence for the existence of two species of Marteilia in Europe. The Journal of Eukaryotic Microbiology. 48: 449-54. PMID 11456321 DOI: 10.1111/J.1550-7408.2001.Tb00178.X  1
2001 Pierrugues O, Brutesco C, Oshiro J, Gouy M, Deveaux Y, Carman GM, Thuriaux P, Kazmaier M. Lipid phosphate phosphatases in Arabidopsis. Regulation of the AtLPP1 gene in response to stress. The Journal of Biological Chemistry. 276: 20300-8. PMID 11278556 DOI: 10.1074/Jbc.M009726200  1
2000 Figueras A, Lorenzo G, Ordás MC, Gouy M, Novoa B. Sequence of the Small Subunit Ribosomal RNA Gene of Perkinsus atlanticus-like Isolated from Carpet Shell Clam in Galicia, Spain. Marine Biotechnology (New York, N.Y.). 2: 419-428. PMID 11246408 DOI: 10.1007/S101260000015  1
2000 Berthe FC, Le Roux F, Peyretaillade E, Peyret P, Rodriguez D, Gouy M, Vivarès CP. Phylogenetic analysis of the small subunit ribosomal RNA of Marteilia refringens validates the existence of phylum Paramyxea (Desportes and Perkins, 1990). The Journal of Eukaryotic Microbiology. 47: 288-93. PMID 10847346 DOI: 10.1111/J.1550-7408.2000.Tb00049.X  1
2000 Perrière G, Duret L, Gouy M. HOBACGEN: database system for comparative genomics in bacteria. Genome Research. 10: 379-85. PMID 10720578 DOI: 10.1101/Gr.10.3.379  1
1999 Tourasse NJ, Gouy M. Accounting for evolutionary rate variation among sequence sites consistently changes universal phylogenies deduced from rRNA and protein-coding genes. Molecular Phylogenetics and Evolution. 13: 159-68. PMID 10508549 DOI: 10.1006/Mpev.1999.0675  1
1999 Galtier N, Tourasse N, Gouy M. A nonhyperthermophilic common ancestor to extant life forms. Science (New York, N.Y.). 283: 220-1. PMID 9880254 DOI: 10.1126/Science.283.5399.220  1
1998 Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ. Multiple sequence alignment with Clustal X. Trends in Biochemical Sciences. 23: 403-5. PMID 9810230 DOI: 10.1016/S0968-0004(98)01285-7  1
1998 Robinson M, Gouy M, Gautier C, Mouchiroud D. Sensitivity of the relative-rate test to taxonomic sampling. Molecular Biology and Evolution. 15: 1091-8. PMID 9729873 DOI: 10.1093/Oxfordjournals.Molbev.A026016  1
1998 Peyretaillade E, Biderre C, Peyret P, Duffieux F, Méténier G, Gouy M, Michot B, Vivarès CP. Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core. Nucleic Acids Research. 26: 3513-20. PMID 9671812 DOI: 10.1093/Nar/26.15.3513  1
1998 Galtier N, Gouy M. Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. Molecular Biology and Evolution. 15: 871-9. PMID 9656487 DOI: 10.1093/Oxfordjournals.Molbev.A025991  1
1998 Peyretaillade E, Broussolle V, Peyret P, Méténier G, Gouy M, Vivarès CP. Microsporidia, amitochondrial protists, possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin. Molecular Biology and Evolution. 15: 683-9. PMID 9615449 DOI: 10.1093/Oxfordjournals.Molbev.A025971  1
1998 Perrière G, Gouy M, Gojobori T. The non-redundant Bacillus subtilis (NRSub) database: update 1998. Nucleic Acids Research. 26: 60-2. PMID 9399801 DOI: 10.1093/Nar/26.1.60  1
1998 Courties C, Perasso R, Chrétiennot-Dinet MJ, Gouy M, Guillou L, Troussellier M. Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta, Prasinophyceae) Journal of Phycology. 34: 844-849. DOI: 10.1046/J.1529-8817.1998.340844.X  1
1997 Pawlowski J, Bolivar I, Fahrni JF, de Vargas C, Gouy M, Zaninetti L. Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record. Molecular Biology and Evolution. 14: 498-505. PMID 9159927 DOI: 10.1093/Oxfordjournals.Molbev.A025786  1
1997 Graur D, Gouy M, Duret L. Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata. Molecular Phylogenetics and Evolution. 7: 195-200. PMID 9126561 DOI: 10.1006/Mpev.1996.0391  1
1997 Tourasse NJ, Gouy M. Evolutionary distances between nucleotide sequences based on the distribution of substitution rates among sites as estimated by parsimony. Molecular Biology and Evolution. 14: 287-98. PMID 9066796 DOI: 10.1093/Oxfordjournals.Molbev.A025764  1
1996 Galtier N, Gouy M, Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Computer Applications in the Biosciences : Cabios. 12: 543-8. PMID 9021275 DOI: 10.1093/Bioinformatics/12.6.543  1
1996 Perrière G, Gouy M. WWW-query: an on-line retrieval system for biological sequence banks. Biochimie. 78: 364-9. PMID 8905155 DOI: 10.1016/0300-9084(96)84768-7  1
1996 Pawlowski J, Bolivar I, Fahrni JF, Cavalier-Smith T, Gouy M. Early origin of foraminifera suggested by SSU rRNA gene sequences. Molecular Biology and Evolution. 13: 445-50. PMID 8742633 DOI: 10.1093/Oxfordjournals.Molbev.A025605  1
1996 Graur D, Duret L, Gouy M. Phylogenetic position of the order Lagomorpha (rabbits, hares and allies) Nature. 379: 333-5. PMID 8552186 DOI: 10.1038/379333A0  0.76
1995 Michaille JJ, Gouy M, Blanchet S, Duret L. Isolation and characterization of a cDNA encoding a chicken actin-like protein. Gene. 154: 205-9. PMID 7890165 DOI: 10.1016/0378-1119(94)00865-P  1
1995 Galtier N, Gouy M. Inferring phylogenies from DNA sequences of unequal base compositions. Proceedings of the National Academy of Sciences of the United States of America. 92: 11317-21. PMID 7479987 DOI: 10.1073/Pnas.92.24.11317  1
1994 Qu D, Hantz O, Gouy M, Vitvitski L, Li JS, Berby F, Tong SP, Trépo C. Heterogeneity of hepatitis C virus genotypes in France. The Journal of General Virology. 75: 1063-70. PMID 8176368 DOI: 10.1099/0022-1317-75-5-1063  1
1994 Orso S, Gouy M, Navarro E, Normand P. Molecular phylogenetic analysis of Nitrobacter spp. International Journal of Systematic Bacteriology. 44: 83-6. PMID 8123564 DOI: 10.1099/00207713-44-1-83  1
1994 Duret L, Mouchiroud D, Gouy M. HOVERGEN: a database of homologous vertebrate genes. Nucleic Acids Research. 22: 2360-5. PMID 8036164 DOI: 10.1093/Nar/22.12.2360  1
1994 Galtier N, Gouy M. Molecular phylogeny of Eubacteria: a new multiple tree analysis method applied to 15 sequence data sets questions the monophyly of gram-positive bacteria. Research in Microbiology. 145: 531-41. PMID 7855439 DOI: 10.1016/0923-2508(94)90030-2  1
1994 Perrière G, Gouy M, Gojobori T. NRSub: a non-redundant data base for the Bacillus subtilis genome. Nucleic Acids Research. 22: 5525-9. PMID 7838704 DOI: 10.1093/Nar/22.25.5525  1
1994 Pawlowski J, Bolivar I, Guiard-Maffia J, Gouy M. Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences. Molecular Biology and Evolution. 11: 929-38. PMID 7815931 DOI: 10.1093/Oxfordjournals.Molbev.A040174  1
1993 Cournoyer B, Gouy M, Normand P. Molecular phylogeny of the symbiotic actinomycetes of the genus Frankia matches host-plant infection processes. Molecular Biology and Evolution. 10: 1303-16. PMID 8277856 DOI: 10.1093/Oxfordjournals.Molbev.A040077  1
1992 Mounier N, Gouy M, Mouchiroud D, Prudhomme JC. Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins. Journal of Molecular Evolution. 34: 406-15. PMID 1602494 DOI: 10.1007/Bf00162997  1
1992 Normand P, Gouy M, Cournoyer B, Simonet P. Nucleotide sequence of nifD from Frankia alni strain ArI3: phylogenetic inferences. Molecular Biology and Evolution. 9: 495-506. PMID 1584016 DOI: 10.1093/Oxfordjournals.Molbev.A040737  1
1992 Perrin-Pecontal P, Gouy M, Nigon VM, Trabuchet G. Evolution of the primate beta-globin gene region: nucleotide sequence of the delta-beta-globin intergenic region of gorilla and phylogenetic relationships between African apes and man. Journal of Molecular Evolution. 34: 17-30. PMID 1556740 DOI: 10.1007/Bf00163849  1
1990 Li WH, Gouy M, Sharp PM, O'hUigin C, Yang YW. Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks. Proceedings of the National Academy of Sciences of the United States of America. 87: 6703-7. PMID 2395871 DOI: 10.1073/Pnas.87.17.6703  1
1990 Li WH, Gouy M. Statistical tests of molecular phylogenies. Methods in Enzymology. 183: 645-59. PMID 2314297 DOI: 10.1016/0076-6879(90)83042-8  1
1990 Gouy M, Li W. Archaebacterial or eocyte tree Nature. 343: 419-419. DOI: 10.1038/343419A0  1
1990 Gouy M, Li WH. Archaebacterial or eocyte tree? [9] Nature. 343: 419.  1
1989 Wolfe KH, Gouy M, Yang YW, Sharp PM, Li WH. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proceedings of the National Academy of Sciences of the United States of America. 86: 6201-5. PMID 2762323 DOI: 10.1073/Pnas.86.16.6201  1
1989 Gouy M, Li WH. Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree. Nature. 339: 145-7. PMID 2497353 DOI: 10.1038/339145A0  1
1989 Gouy M, Li WH. Molecular phylogeny of the kingdoms Animalia, Plantae, and Fungi. Molecular Biology and Evolution. 6: 109-22. PMID 2469937 DOI: 10.1093/Oxfordjournals.Molbev.A040536  1
1989 Li WH, Gouy M, Wolfe KH, Sharp PM. Angiosperm origins [9] Nature. 342: 131-132.  1
1988 Mémet S, Gouy M, Marck C, Sentenac A, Buhler JM. RPA190, the gene coding for the largest subunit of yeast RNA polymerase A. The Journal of Biological Chemistry. 263: 2830-9. PMID 2830265  1
1987 Higgins DG, Gouy M. Interfacing similarity search software with the sequence retrieval system ACNUC. Computer Applications in the Biosciences : Cabios. 3: 239-41. PMID 3453234 DOI: 10.1093/Bioinformatics/3.3.239  1
1987 Gouy M. Codon contexts in enterobacterial and coliphage genes. Molecular Biology and Evolution. 4: 426-44. PMID 3128715 DOI: 10.1093/Oxfordjournals.Molbev.A040450  1
1985 Gouy M, Gautier C, Milleret F. System analysis and nucleic acid sequence banks. Biochimie. 67: 433-6. PMID 4027278 DOI: 10.1016/S0300-9084(85)80260-1  1
1985 Savatier P, Trabuchet G, Faure C, Chebloune Y, Gouy M, Verdier G, Nigon VM. Evolution of the primate beta-globin gene region. High rate of variation in CpG dinucleotides and in short repeated sequences between man and chimpanzee. Journal of Molecular Biology. 182: 21-9. PMID 3999143 DOI: 10.1016/0022-2836(85)90024-5  1
1985 Gouy M, Gautier C, Attimonelli M, Lanave C, di Paola G. ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. Computer Applications in the Biosciences : Cabios. 1: 167-72. PMID 3880341 DOI: 10.1093/Bioinformatics/1.3.167  1
1985 Gouy M, Marliere P, Papanicolaou C, Ninio J. [Prediction of secondary structures of nucleic acids: algorithmic and physical aspects]. Biochimie. 67: 523-31. PMID 3839694 DOI: 10.1016/S0300-9084(85)80272-8  1
1985 Gautier C, Gouy M, Louail S. Non-parametric statistics for nucleic acid sequence study. Biochimie. 67: 449-53. PMID 2992611 DOI: 10.1016/S0300-9084(85)80263-7  1
1984 Papanicolaou C, Gouy M, Ninio J. An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules. Nucleic Acids Research. 12: 31-44. PMID 6694903 DOI: 10.1093/Nar/12.1Part1.31  1
1984 Gouy M, Milleret F, Mugnier C, Jacobzone M, Gautier C. ACNUC: a nucleic acid sequence data base and analysis system. Nucleic Acids Research. 12: 121-7. PMID 6694896 DOI: 10.1093/Nar/12.1Part1.121  1
1982 Gouy M, Gautier C. Codon usage in bacteria: correlation with gene expressivity. Nucleic Acids Research. 10: 7055-74. PMID 6760125 DOI: 10.1093/Nar/10.22.7055  1
1981 Grantham R, Gautier C, Gouy M, Jacobzone M, Mercier R. Codon catalog usage is a genome strategy modulated for gene expressivity. Nucleic Acids Research. 9: r43-74. PMID 7208352 DOI: 10.1093/Nar/9.1.213-B  1
1980 Gouy M, Grantham R. Polypeptide elongation and tRNA cycling in Escherichia coli: a dynamic approach. Febs Letters. 115: 151-5. PMID 6995150 DOI: 10.1016/0014-5793(80)81155-0  1
1980 Grantham R, Gautier C, Gouy M, Mercier R, Pavé A. Codon catalog usage and the genome hypothesis. Nucleic Acids Research. 8: r49-r62. PMID 6986610 DOI: 10.1093/Nar/8.1.197-C  1
1980 Grantham R, Gautier C, Gouy M. Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type. Nucleic Acids Research. 8: 1893-912. PMID 6159596 DOI: 10.1093/Nar/8.9.1893  1
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