| Year |
Citation |
Score |
| 2021 |
Sellis D, Guérin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, ... Duret L, et al. Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes. Plos Biology. 19: e3001309. PMID 34324490 DOI: 10.1371/journal.pbio.3001309 |
1 |
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| 2021 |
Fraïsse C, Popovic I, Mazoyer C, Spataro B, Delmotte S, Romiguier J, Loire É, Simon A, Galtier N, Duret L, Bierne N, Vekemans X, Roux C. DILS: Demographic Inferences with Linked Selection by using ABC. Molecular Ecology Resources. PMID 33448666 DOI: 10.1111/1755-0998.13323 |
1 |
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| 2020 |
Sawka-Gądek N, Potekhin A, Singh DP, Grevtseva I, Arnaiz O, Penel S, Sperling L, Tarcz S, Duret L, Nekrasova I, Meyer E. Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species. Genome Biology and Evolution. PMID 33313646 DOI: 10.1093/gbe/evaa258 |
1 |
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| 2020 |
Saclier N, Chardon P, Malard F, Konecny-Dupré L, Eme D, Bellec A, Breton V, Duret L, Lefebure T, Douady CJ. Bedrock radioactivity influences the rate and spectrum of mutation. Elife. 9. PMID 33252037 DOI: 10.7554/eLife.56830 |
1 |
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| 2020 |
Cariou M, Henri H, Martinez S, Duret L, Charlat S. How consistent is RAD-seq divergence with DNA-barcode based clustering in insects? Molecular Ecology Resources. PMID 32340081 DOI: 10.1111/1755-0998.13178 |
1 |
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| 2020 |
Koutsovoulos GD, Marques E, Arguel MJ, Duret L, Machado ACZ, Carneiro RMDG, Kozlowski DK, Bailly-Bechet M, Castagnone-Sereno P, Albuquerque EVS, Danchin EGJ. Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest. Evolutionary Applications. 13: 442-457. PMID 31993088 DOI: 10.1111/Eva.12881 |
0.01 |
|
| 2019 |
Massip F, Laurent M, Brossas C, Fernández-Justel JM, Gómez M, Prioleau MN, Duret L, Picard F. Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints. Nucleic Acids Research. PMID 30916335 DOI: 10.1093/Nar/Gkz182 |
1 |
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| 2019 |
Reiss D, Mialdea G, Miele V, de Vienne D, Peccoud J, Gilbert C, Duret L, Charlat S. Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot. Plos Genetics. 15: e1007965. PMID 30707693 DOI: 10.1371/Journal.Pgen.1007965 |
1 |
|
| 2019 |
Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T. Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods. Molecular Biology and Evolution. PMID 30690454 DOI: 10.1093/molbev/msy247 |
1 |
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| 2019 |
Bolívar P, Guéguen L, Duret L, Ellegren H, Mugal CF. GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes. Genome Biology. 20: 5. PMID 30616647 DOI: 10.1186/S13059-018-1613-Z |
0.01 |
|
| 2018 |
Saclier N, François CM, Konecny-Dupré L, Lartillot N, Guéguen L, Duret L, Malard F, Douady CJ, Lefébure T. Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods. Molecular Biology and Evolution. PMID 30247705 DOI: 10.1093/Molbev/Msy184 |
1 |
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| 2018 |
Diagouraga B, Clément JAJ, Duret L, Kadlec J, de Massy B, Baudat F. PRDM9 Methyltransferase Activity Is Essential for Meiotic DNA Double-Strand Break Formation at Its Binding Sites. Molecular Cell. PMID 29478809 DOI: 10.1016/J.Molcel.2018.01.033 |
0.01 |
|
| 2018 |
Galtier N, Roux C, Rousselle M, Romiguier J, Figuet E, Glémin S, Bierne N, Duret L. Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion. Molecular Biology and Evolution. 35: 1092-1103. PMID 29390090 DOI: 10.1093/Molbev/Msy015 |
1 |
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| 2017 |
Guéeguen L, Duret L. Unbiased estimate of synonymous and non-synonymous substitution rates with non-stationary base composition. Molecular Biology and Evolution. PMID 29220511 DOI: 10.1093/Molbev/Msx308 |
0.01 |
|
| 2017 |
Latrille T, Duret L, Lartillot N. The Red Queen model of recombination hot-spot evolution: a theoretical investigation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 29109226 DOI: 10.1098/Rstb.2016.0463 |
1 |
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| 2017 |
Saudemont B, Popa A, Parmley JL, Rocher V, Blugeon C, Necsulea A, Meyer E, Duret L. The fitness cost of mis-splicing is the main determinant of alternative splicing patterns. Genome Biology. 18: 208. PMID 29084568 DOI: 10.1186/S13059-017-1344-6 |
1 |
|
| 2017 |
Cariou M, Duret L, Charlat S. The global impact of Wolbachia on mitochondrial diversity and evolution. Journal of Evolutionary Biology. PMID 28977708 DOI: 10.1111/Jeb.13186 |
1 |
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| 2017 |
Pouyet F, Mouchiroud D, Duret L, Sémon M. Recombination, meiotic expression and human codon usage. Elife. 6. PMID 28826480 DOI: 10.7554/Elife.27344 |
1 |
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| 2017 |
Lefébure T, Morvan C, Malard F, François C, Konecny-Dupré L, Guéguen L, Weiss-Gayet M, Seguin-Orlando A, Ermini L, Der Sarkissian C, Charrier NP, Eme D, Mermillod-Blondin F, Duret L, Vieira C, et al. Less effective selection leads to larger genomes. Genome Research. PMID 28424354 DOI: 10.1101/Gr.212589.116 |
1 |
|
| 2017 |
Grey C, Clément JA, Buard J, Leblanc B, Gut I, Gut M, Duret L, de Massy B. In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites. Genome Research. PMID 28336543 DOI: 10.1101/Gr.217240.116 |
0.01 |
|
| 2017 |
Pouyet F, Mouchiroud D, Duret L, Sémon M. Author response: Recombination, meiotic expression and human codon usage Elife. DOI: 10.7554/Elife.27344.028 |
1 |
|
| 2016 |
Cariou M, Duret L, Charlat S. How and how much does RAD-seq bias genetic diversity estimates? Bmc Evolutionary Biology. 16: 240. PMID 27825303 DOI: 10.1186/S12862-016-0791-0 |
1 |
|
| 2016 |
Francois CM, Duret L, Simon L, Mermillod-Blondin F, Malard F, Konecny-Dupré L, Planel R, Penel S, Douady CJ, Lefébure T. No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes. Molecular Biology and Evolution. PMID 27401232 DOI: 10.1093/Molbev/Msw131 |
1 |
|
| 2015 |
Tessereau C, Léoné M, Buisson M, Duret L, Sinilnikova OM, Mazoyer S. Occurrence of a non deleterious gene conversion event in the BRCA1 gene. Genes, Chromosomes & Cancer. 54: 646-52. PMID 26171949 DOI: 10.1002/Gcc.22278 |
1 |
|
| 2015 |
Glémin S, Arndt PF, Messer PW, Petrov D, Galtier N, Duret L. Quantification of GC-biased gene conversion in the human genome. Genome Research. PMID 25995268 DOI: 10.1101/Gr.185488.114 |
1 |
|
| 2015 |
Henri H, Cariou M, Terraz G, Martinez S, El Filali A, Veyssiere M, Duret L, Charlat S. Optimization of multiplexed RADseq libraries using low-cost adaptors. Genetica. 143: 139-43. PMID 25666920 DOI: 10.1007/S10709-015-9828-3 |
1 |
|
| 2015 |
Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V. GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands. Plos Genetics. 11: e1004941. PMID 25659072 DOI: 10.1371/Journal.Pgen.1004941 |
1 |
|
| 2014 |
Lesecque Y, Glémin S, Lartillot N, Mouchiroud D, Duret L. The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes. Plos Genetics. 10: e1004790. PMID 25393762 DOI: 10.1371/Journal.Pgen.1004790 |
1 |
|
| 2014 |
Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, Chenuil A, Chiari Y, Dernat R, Duret L, Faivre N, Loire E, Lourenco JM, Nabholz B, Roux C, Tsagkogeorga G, et al. Comparative population genomics in animals uncovers the determinants of genetic diversity. Nature. 515: 261-3. PMID 25141177 DOI: 10.1038/Nature13685 |
1 |
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| 2014 |
Tessereau C, Lesecque Y, Monnet N, Buisson M, Barjhoux L, Léoné M, Feng B, Goldgar DE, Sinilnikova OM, Mousset S, Duret L, Mazoyer S. Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing. Nucleic Acids Research. 42: 9121-30. PMID 25034697 DOI: 10.1093/Nar/Gku639 |
1 |
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| 2014 |
Picard F, Cadoret JC, Audit B, Arneodo A, Alberti A, Battail C, Duret L, Prioleau MN. The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells. Plos Genetics. 10: e1004282. PMID 24785686 DOI: 10.1371/Journal.Pgen.1004282 |
1 |
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| 2014 |
Kvikstad EM, Duret L. Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome. Molecular Biology and Evolution. 31: 23-36. PMID 24113537 DOI: 10.1093/Molbev/Mst185 |
1 |
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| 2014 |
Lesecque Y, Glémin S, Lartillot N, Mouchiroud D, Duret L. Motifs loss rates within and outside modern human recombination hotspots (HapMap). Plos Genetics. DOI: 10.1371/Journal.Pgen.1004790.T002 |
1 |
|
| 2013 |
Cariou M, Duret L, Charlat S. Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization. Ecology and Evolution. 3: 846-52. PMID 23610629 DOI: 10.1002/Ece3.512 |
1 |
|
| 2013 |
Lesecque Y, Mouchiroud D, Duret L. GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance. Molecular Biology and Evolution. 30: 1409-19. PMID 23505044 DOI: 10.1093/Molbev/Mst056 |
1 |
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| 2013 |
Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J, MacArthur DG, ... ... Duret L, et al. The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Research. 23: 749-61. PMID 23478400 DOI: 10.1101/Gr.148718.112 |
1 |
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| 2013 |
Vallot C, Huret C, Lesecque Y, Resch A, Oudrhiri N, Bennaceur-Griscelli A, Duret L, Rougeulle C. XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells. Nature Genetics. 45: 239-41. PMID 23334669 DOI: 10.1038/Ng.2530 |
1 |
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| 2013 |
Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V. Genome-scale coestimation of species and gene trees. Genome Research. 23: 323-30. PMID 23132911 DOI: 10.1101/Gr.141978.112 |
1 |
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| 2012 |
Arnaiz O, Mathy N, Baudry C, Malinsky S, Aury JM, Denby Wilkes C, Garnier O, Labadie K, Lauderdale BE, Le Mouël A, Marmignon A, Nowacki M, Poulain J, Prajer M, Wincker P, ... ... Duret L, et al. The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences. Plos Genetics. 8: e1002984. PMID 23071448 DOI: 10.1371/Journal.Pgen.1002984 |
1 |
|
| 2012 |
Pessia E, Popa A, Mousset S, Rezvoy C, Duret L, Marais GA. Evidence for widespread GC-biased gene conversion in eukaryotes. Genome Biology and Evolution. 4: 675-82. PMID 22628461 DOI: 10.1093/Gbe/Evs052 |
1 |
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| 2012 |
Miele V, Penel S, Daubin V, Picard F, Kahn D, Duret L. High-quality sequence clustering guided by network topology and multiple alignment likelihood. Bioinformatics (Oxford, England). 28: 1078-85. PMID 22368255 DOI: 10.1093/Bioinformatics/Bts098 |
1 |
|
| 2011 |
Cusack BP, Arndt PF, Duret L, Roest Crollius H. Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes. Plos Genetics. 7: e1002276. PMID 22022272 DOI: 10.1371/Journal.Pgen.1002276 |
1 |
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| 2011 |
Miele V, Penel S, Duret L. Ultra-fast sequence clustering from similarity networks with SiLiX. Bmc Bioinformatics. 12: 116. PMID 21513511 DOI: 10.1186/1471-2105-12-116 |
1 |
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| 2011 |
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nature Communications. 2: 202. PMID 21326234 DOI: 10.1038/Ncomms1189 |
1 |
|
| 2011 |
NecÅŸulea A, Popa A, Cooper DN, Stenson PD, Mouchiroud D, Gautier C, Duret L. Meiotic recombination favors the spreading of deleterious mutations in human populations. Human Mutation. 32: 198-206. PMID 21120948 DOI: 10.1002/Humu.21407 |
1 |
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| 2011 |
Chureau C, Chantalat S, Romito A, Galvani A, Duret L, Avner P, Rougeulle C. Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region. Human Molecular Genetics. 20: 705-18. PMID 21118898 DOI: 10.1093/Hmg/Ddq516 |
1 |
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| 2010 |
Arnaiz O, Goût JF, Bétermier M, Bouhouche K, Cohen J, Duret L, Kapusta A, Meyer E, Sperling L. Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia. Bmc Genomics. 11: 547. PMID 20932287 DOI: 10.1186/1471-2164-11-547 |
1 |
|
| 2010 |
Ratnakumar A, Mousset S, Glémin S, Berglund J, Galtier N, Duret L, Webster MT. Detecting positive selection within genomes: the problem of biased gene conversion. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2571-80. PMID 20643747 DOI: 10.1098/Rstb.2010.0007 |
1 |
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| 2010 |
Gout JF, Kahn D, Duret L. The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. Plos Genetics. 6: e1000944. PMID 20485561 DOI: 10.1371/Journal.Pgen.1000944 |
1 |
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| 2010 |
Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. Immunocytochemistry of Paramecium cytoskeletal structures. Cold Spring Harbor Protocols. 2010: pdb.prot5365. PMID 20150124 DOI: 10.1101/Pdb.Prot5365 |
1 |
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| 2010 |
Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. DNA microinjection into the macronucleus of paramecium. Cold Spring Harbor Protocols. 2010: pdb.prot5364. PMID 20150123 DOI: 10.1101/Pdb.Prot5364 |
1 |
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| 2010 |
Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. Silencing specific Paramecium tetraurelia genes by feeding double-stranded RNA. Cold Spring Harbor Protocols. 2010: pdb.prot5363. PMID 20150122 DOI: 10.1101/Pdb.Prot5363 |
1 |
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| 2010 |
Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. Mass culture of Paramecium tetraurelia. Cold Spring Harbor Protocols. 2010: pdb.prot5362. PMID 20150121 DOI: 10.1101/Pdb.Prot5362 |
1 |
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| 2010 |
Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. Maintaining clonal Paramecium tetraurelia cell lines of controlled age through daily reisolation. Cold Spring Harbor Protocols. 2010: pdb.prot5361. PMID 20150120 DOI: 10.1101/Pdb.Prot5361 |
1 |
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| 2010 |
Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. Paramecium tetraurelia: the renaissance of an early unicellular model. Cold Spring Harbor Protocols. 2010: pdb.emo140. PMID 20150105 DOI: 10.1101/Pdb.Emo140 |
1 |
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| 2009 |
Necsulea A, Sémon M, Duret L, Hurst LD. Monoallelic expression and tissue specificity are associated with high crossover rates. Trends in Genetics : Tig. 25: 519-22. PMID 19850368 DOI: 10.1016/J.Tig.2009.10.001 |
1 |
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| 2009 |
Duret L, Galtier N. Biased gene conversion and the evolution of mammalian genomic landscapes. Annual Review of Genomics and Human Genetics. 10: 285-311. PMID 19630562 DOI: 10.1146/Annurev-Genom-082908-150001 |
1 |
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| 2009 |
Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G. Databases of homologous gene families for comparative genomics. Bmc Bioinformatics. 10: S3. PMID 19534752 DOI: 10.1186/1471-2105-10-S6-S3 |
1 |
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| 2009 |
Gout JF, Duret L, Kahn D. Differential retention of metabolic genes following whole-genome duplication. Molecular Biology and Evolution. 26: 1067-72. PMID 19218282 DOI: 10.1093/Molbev/Msp026 |
1 |
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| 2009 |
Duret L, Galtier N. Comment on "Human-specific gain of function in a developmental enhancer". Science (New York, N.Y.). 323: 714; author reply 71. PMID 19197042 DOI: 10.1126/Science.1165848 |
1 |
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| 2009 |
Duret L. Mutation patterns in the human genome: more variable than expected. Plos Biology. 7: e1000028. PMID 19192948 DOI: 10.1371/Journal.Pbio.1000028 |
1 |
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| 2009 |
Necsulea A, Guillet C, Cadoret JC, Prioleau MN, Duret L. The relationship between DNA replication and human genome organization. Molecular Biology and Evolution. 26: 729-41. PMID 19126867 DOI: 10.1093/Molbev/Msn303 |
1 |
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| 2009 |
Galtier N, Duret L, Glémin S, Ranwez V. GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates. Trends in Genetics : Tig. 25: 1-5. PMID 19027980 DOI: 10.1016/J.Tig.2008.10.011 |
1 |
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| 2009 |
Marais G, Duret L. Evolution of human sexual chromosomes | L'évolution des chromosomes sexuels humains Biofutur. 40-43. |
1 |
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| 2008 |
Cadoret JC, Meisch F, Hassan-Zadeh V, Luyten I, Guillet C, Duret L, Quesneville H, Prioleau MN. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proceedings of the National Academy of Sciences of the United States of America. 105: 15837-42. PMID 18838675 DOI: 10.1073/Pnas.0805208105 |
1 |
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| 2008 |
Studer RA, Penel S, Duret L, Robinson-Rechavi M. Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes. Genome Research. 18: 1393-402. PMID 18562677 DOI: 10.1101/Gr.076992.108 |
1 |
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| 2008 |
Duret L, Arndt PF. The impact of recombination on nucleotide substitutions in the human genome. Plos Genetics. 4: e1000071. PMID 18464896 DOI: 10.1371/Journal.Pgen.1000071 |
1 |
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| 2008 |
Duret L, Cohen J, Jubin C, Dessen P, Goût JF, Mousset S, Aury JM, Jaillon O, Noël B, Arnaiz O, Bétermier M, Wincker P, Meyer E, Sperling L. Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline. Genome Research. 18: 585-96. PMID 18256234 DOI: 10.1101/Gr.074534.107 |
1 |
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| 2008 |
Jaillon O, Bouhouche K, Gout JF, Aury JM, Noel B, Saudemont B, Nowacki M, Serrano V, Porcel BM, Ségurens B, Le Mouël A, Lepère G, Schächter V, Bétermier M, Cohen J, ... ... Duret L, et al. Translational control of intron splicing in eukaryotes. Nature. 451: 359-62. PMID 18202663 DOI: 10.1038/Nature06495 |
1 |
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| 2008 |
Couté Y, Kindbeiter K, Belin S, Dieckmann R, Duret L, Bezin L, Sanchez JC, Diaz JJ. ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in ribosome biogenesis. Molecular & Cellular Proteomics : McP. 7: 546-59. PMID 18065403 DOI: 10.1074/Mcp.M700510-Mcp200 |
1 |
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| 2007 |
Buchet-Poyau K, Courchet J, Hir HL, Séraphin B, Scoazec JY, Duret L, Domon-Dell C, Freund JN, Billaud M. Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies. Nucleic Acids Research. 35: 1289-1300. PMID 28383722 DOI: 10.1093/nar/gkm016 |
1 |
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| 2007 |
Keime C, Sémon M, Mouchiroud D, Duret L, Gandrillon O. Unexpected observations after mapping LongSAGE tags to the human genome. Bmc Bioinformatics. 8: 154. PMID 17504516 DOI: 10.1186/1471-2105-8-154 |
1 |
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| 2007 |
Galtier N, Duret L. Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution. Trends in Genetics : Tig. 23: 273-7. PMID 17418442 DOI: 10.1016/J.Tig.2007.03.011 |
1 |
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| 2007 |
Buchet-Poyau K, Courchet J, Le Hir H, Séraphin B, Scoazec JY, Duret L, Domon-Dell C, Freund JN, Billaud M. Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies. Nucleic Acids Research. 35: 1289-300. PMID 17267406 DOI: 10.1093/Nar/Gkm016 |
1 |
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| 2006 |
Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, et al. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature. 444: 171-8. PMID 17086204 DOI: 10.1038/Nature05230 |
1 |
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| 2006 |
Duret L, Eyre-Walker A, Galtier N. A new perspective on isochore evolution. Gene. 385: 71-4. PMID 16971063 DOI: 10.1016/J.Gene.2006.04.030 |
1 |
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| 2006 |
Duret L, Chureau C, Samain S, Weissenbach J, Avner P. The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene. Science (New York, N.Y.). 312: 1653-5. PMID 16778056 DOI: 10.1126/Science.1126316 |
1 |
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| 2006 |
Sémon M, Duret L. Evolutionary origin and maintenance of coexpressed gene clusters in mammals. Molecular Biology and Evolution. 23: 1715-23. PMID 16757654 DOI: 10.1093/Molbev/Msl034 |
1 |
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| 2006 |
Duret L. The GC content of primates and rodents genomes is not at equilibrium: a reply to Antezana. Journal of Molecular Evolution. 62: 803-6. PMID 16752218 DOI: 10.1007/S00239-005-0228-7 |
1 |
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| 2006 |
Khelifi A, Meunier J, Duret L, Mouchiroud D. GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates. Journal of Molecular Evolution. 62: 745-52. PMID 16752212 DOI: 10.1007/S00239-005-0186-0 |
1 |
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| 2006 |
Sémon M, Lobry JR, Duret L. No evidence for tissue-specific adaptation of synonymous codon usage in humans. Molecular Biology and Evolution. 23: 523-9. PMID 16280544 DOI: 10.1093/Molbev/Msj053 |
1 |
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| 2005 |
Hurst LD, Duret L. Bioinformatics with a French accent. Genome Biology. 6: 349. PMID 16207367 DOI: 10.1186/Gb-2005-6-10-349 |
1 |
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| 2005 |
Bonnaud B, Beliaeff J, Bouton O, Oriol G, Duret L, Mallet F. Natural history of the ERVWE1 endogenous retroviral locus. Retrovirology. 2: 57. PMID 16176588 DOI: 10.1186/1742-4692-2-57 |
1 |
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| 2005 |
Meunier J, Khelifi A, Navratil V, Duret L. Homology-dependent methylation in primate repetitive DNA. Proceedings of the National Academy of Sciences of the United States of America. 102: 5471-6. PMID 15797989 DOI: 10.1073/Pnas.0408986102 |
1 |
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| 2005 |
Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics (Oxford, England). 21: 2596-603. PMID 15713731 DOI: 10.1093/Bioinformatics/Bti325 |
1 |
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| 2005 |
Khelifi A, Adel K, Duret L, Laurent D, Mouchiroud D, Dominique M. HOPPSIGEN: a database of human and mouse processed pseudogenes. Nucleic Acids Research. 33: D59-66. PMID 15608268 DOI: 10.1093/nar/gki084 |
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| 2005 |
Bazin E, Duret L, Penel S, Galtier N. Polymorphix: a sequence polymorphism database. Nucleic Acids Research. 33: D481-4. PMID 15608242 DOI: 10.1093/Nar/Gki076 |
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| 2005 |
Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, Mclaren P, ... ... Duret L, et al. Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Research. 33: D297-302. PMID 15608201 DOI: 10.1093/Nar/Gki039 |
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| 2005 |
Sémon M, Mouchiroud D, Duret L. Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance. Human Molecular Genetics. 14: 421-7. PMID 15590696 DOI: 10.1093/Hmg/Ddi038 |
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| 2004 |
Keime C, Damiola F, Mouchiroud D, Duret L, Gandrillon O. Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. Bmc Bioinformatics. 5: 143. PMID 15469608 DOI: 10.1186/1471-2105-5-143 |
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| 2004 |
Belle EM, Duret L, Galtier N, Eyre-Walker A. The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny. Journal of Molecular Evolution. 58: 653-60. PMID 15461422 DOI: 10.1007/S00239-004-2587-X |
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| 2004 |
Bonnaud B, Bouton O, Oriol G, Cheynet V, Duret L, Mallet F. Evidence of selection on the domesticated ERVWE1 env retroviral element involved in placentation. Molecular Biology and Evolution. 21: 1895-901. PMID 15254254 DOI: 10.1093/Molbev/Msh206 |
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| 2004 |
Sémon M, Duret L. Evidence that functional transcription units cover at least half of the human genome. Trends in Genetics : Tig. 20: 229-32. PMID 15109775 DOI: 10.1016/J.Tig.2004.03.001 |
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| 2004 |
Michon L, Morlé L, Bozon M, Duret L, Zech JC, Godet J, Plauchu H, Edery P. Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region. European Journal of Human Genetics : Ejhg. 12: 574-8. PMID 15083168 DOI: 10.1038/Sj.Ejhg.5201197 |
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| 2004 |
Meunier J, Duret L. Recombination drives the evolution of GC-content in the human genome. Molecular Biology and Evolution. 21: 984-90. PMID 14963104 DOI: 10.1093/Molbev/Msh070 |
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| 2004 |
Mallet F, Bouton O, Prudhomme S, Cheynet V, Oriol G, Bonnaud B, Lucotte G, Duret L, Mandrand B. The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology. Proceedings of the National Academy of Sciences of the United States of America. 101: 1731-6. PMID 14757826 DOI: 10.1073/Pnas.0305763101 |
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| 2004 |
Reymond N, Charles H, Duret L, Calevro F, Beslon G, Fayard JM. ROSO: optimizing oligonucleotide probes for microarrays. Bioinformatics (Oxford, England). 20: 271-3. PMID 14734320 DOI: 10.1093/Bioinformatics/Btg401 |
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| 2004 |
Jacq N, Blanchet C, Combet C, Cornillot E, Duret L, Kurata K, Nakamura H, Silvestre T, Breton V. Grid as a bioinformatic tool Parallel Computing. 30: 1093-1107. DOI: 10.1016/j.parco.2004.07.013 |
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| 2003 |
Rizzon C, Martin E, Marais G, Duret L, Ségalat L, Biémont C. Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans. Genetics. 165: 1127-35. PMID 14668370 |
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| 2003 |
Assossou O, Besson F, Rouault JP, Persat F, Brisson C, Duret L, Ferrandiz J, Mayençon M, Peyron F, Picot S. Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form. Fems Microbiology Letters. 224: 161-8. PMID 12892878 DOI: 10.1016/S0378-1097(03)00479-8 |
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| 2003 |
Marais G, Mouchiroud D, Duret L. Neutral effect of recombination on base composition in Drosophila. Genetical Research. 81: 79-87. PMID 12872909 DOI: 10.1017/S0016672302006079 |
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| 2003 |
Perrière G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deléage G. Integrated databanks access and sequence/structure analysis services at the PBIL. Nucleic Acids Research. 31: 3393-9. PMID 12824334 DOI: 10.1093/Nar/Gkg530 |
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| 2003 |
Bièche I, Laurent A, Laurendeau I, Duret L, Giovangrandi Y, Frendo JL, Olivi M, Fausser JL, Evain-Brion D, Vidaud M. Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element. Biology of Reproduction. 68: 1422-9. PMID 12606452 DOI: 10.1095/Biolreprod.102.010322 |
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| 2002 |
Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N. Vanishing GC-rich isochores in mammalian genomes. Genetics. 162: 1837-47. PMID 12524353 |
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| 2002 |
Duret L. Evolution of synonymous codon usage in metazoans. Current Opinion in Genetics & Development. 12: 640-9. PMID 12433576 DOI: 10.1016/S0959-437X(02)00353-2 |
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| 2002 |
Duret L. Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants. Bioinformatics (Oxford, England). 18: S91. PMID 12385989 |
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| 2002 |
Chureau C, Prissette M, Bourdet A, Barbe V, Cattolico L, Jones L, Eggen A, Avner P, Duret L. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Genome Research. 12: 894-908. PMID 12045143 DOI: 10.1101/Gr.152902 |
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| 2002 |
Piganeau G, Mouchiroud D, Duret L, Gautier C. Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores. Journal of Molecular Evolution. 54: 129-33. PMID 11734906 DOI: 10.1007/S00239-001-0011-3 |
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| 2001 |
Galtier N, Piganeau G, Mouchiroud D, Duret L. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics. 159: 907-11. PMID 11693127 |
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| 2001 |
Ponger L, Duret L, Mouchiroud D. Determinants of CpG islands: expression in early embryo and isochore structure. Genome Research. 11: 1854-60. PMID 11691850 DOI: 10.1101/Gr.174501 |
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| 2001 |
Frendo P, Jiménez MJ, Mathieu C, Duret L, Gallesi D, Van de Sype G, Hérouart D, Puppo A. A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication. Plant Physiology. 126: 1706-15. PMID 11500568 DOI: 10.1104/Pp.126.4.1706 |
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| 2001 |
Marais G, Duret L. Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans. Journal of Molecular Evolution. 52: 275-80. PMID 11428464 DOI: 10.1007/S002390010155 |
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| 2001 |
Marais G, Mouchiroud D, Duret L. Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes. Proceedings of the National Academy of Sciences of the United States of America. 98: 5688-92. PMID 11320215 DOI: 10.1073/Pnas.091427698 |
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| 2001 |
Duret L, Hurst LD. The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution. Molecular Biology and Evolution. 18: 757-62. PMID 11319260 DOI: 10.1093/Oxfordjournals.Molbev.A003858 |
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| 2001 |
Duret L. Why do genes have introns? Recombination might add a new piece to the puzzle. Trends in Genetics : Tig. 17: 172-5. PMID 11275306 DOI: 10.1016/S0168-9525(01)02236-3 |
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| 2000 |
Duret L, Marais G, Biémont C. Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans. Genetics. 156: 1661-9. PMID 11102365 |
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| 2000 |
Ott C, Duret L, Chemin I, Trépo C, Mandrand B, Komurian-Pradel F. Use of a TT virus ORF1 recombinant protein to detect anti-TT virus antibodies in human sera. The Journal of General Virology. 81: 2949-58. PMID 11086126 DOI: 10.1099/0022-1317-81-12-2949 |
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| 2000 |
Duret L, Galtier N. The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact. Molecular Biology and Evolution. 17: 1620-5. PMID 11070050 DOI: 10.1093/Oxfordjournals.Molbev.A026261 |
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| 2000 |
Birot A, Duret L, Bartholin L, Santalucia B, Tigaud I, Magaud J, Rouault J. Identification and molecular analysis of BANP. Gene. 253: 189-96. PMID 10940556 DOI: 10.1016/S0378-1119(00)00244-4 |
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| 2000 |
Duret L. tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes. Trends in Genetics : Tig. 16: 287-9. PMID 10858656 DOI: 10.1016/S0168-9525(00)02041-2 |
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| 2000 |
Voisset C, Bouton O, Bedin F, Duret L, Mandrand B, Mallet F, Paranhos-Baccala G. Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family. Aids Research and Human Retroviruses. 16: 731-40. PMID 10826480 DOI: 10.1089/088922200308738 |
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| 2000 |
Gonçalves I, Duret L, Mouchiroud D. Nature and structure of human genes that generate retropseudogenes. Genome Research. 10: 672-8. PMID 10810090 DOI: 10.1101/Gr.10.5.672 |
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| 2000 |
Perrière G, Duret L, Gouy M. HOBACGEN: database system for comparative genomics in bacteria. Genome Research. 10: 379-85. PMID 10720578 DOI: 10.1101/Gr.10.3.379 |
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| 2000 |
Duret L, Mouchiroud D. Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Molecular Biology and Evolution. 17: 68-74. PMID 10666707 DOI: 10.1093/Oxfordjournals.Molbev.A026239 |
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| 1999 |
Wheelan SJ, Boguski MS, Duret L, Maka?owski W. Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans. Gene. 238: 163-70. PMID 10570994 DOI: 10.1016/S0378-1119(99)00298-X |
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| 1999 |
Rouault JP, Kuwabara PE, Sinilnikova OM, Duret L, Thierry-Mieg D, Billaud M. Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN. Current Biology : Cb. 9: 329-32. PMID 10209098 DOI: 10.1016/S0960-9822(99)80143-2 |
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| 1999 |
Duret L, Mouchiroud D. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 96: 4482-7. PMID 10200288 DOI: 10.1073/Pnas.96.8.4482 |
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| 1999 |
Blond JL, Besème F, Duret L, Bouton O, Bedin F, Perron H, Mandrand B, Mallet F. Molecular characterization and placental expression of HERV-W, a new human endogenous retrovirus family. Journal of Virology. 73: 1175-85. PMID 9882319 DOI: 10.1128/Jvi.73.2.1175-1185.1999 |
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| 1998 |
Spicher A, Guicherit OM, Duret L, Aslanian A, Sanjines EM, Denko NC, Giaccia AJ, Blau HM. Highly conserved RNA sequences that are sensors of environmental stress. Molecular and Cellular Biology. 18: 7371-82. PMID 9819424 DOI: 10.1128/Mcb.18.12.7371 |
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| 1998 |
Duret L, Guex N, Peitsch MC, Bairoch A. New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling. Genome Research. 8: 348-53. PMID 9548970 DOI: 10.1101/Gr.8.4.348 |
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| 1997 |
Duret L, Fenart R, Donazzan M. The morphogenesis of the temporomandibular joint considered in its phylogenic aspects in vestibular orientation | La morphogenèse de l'articulation temporo-mandibulaire considérée sous son aspect phylogénique en orientation vestibulaire Revue De Stomatologie Et De Chirurgie Maxillo-Faciale. 98: 89-92. PMID 9471708 |
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| 1997 |
Lesénéchal M, Duret L, Cano MI, Mortara RA, Jolivet M, Camargo ME, da Silveira JF, Paranhos-Baccalà G. Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi. Molecular and Biochemical Parasitology. 87: 193-204. PMID 9247930 DOI: 10.1016/S0166-6851(97)00068-6 |
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| 1997 |
Duret L, Bucher P. Searching for regulatory elements in human noncoding sequences Current Opinion in Structural Biology. 7: 399-406. PMID 9204283 DOI: 10.1016/S0959-440X(97)80058-9 |
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| 1997 |
Graur D, Gouy M, Duret L. Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata. Molecular Phylogenetics and Evolution. 7: 195-200. PMID 9126561 DOI: 10.1006/Mpev.1996.0391 |
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| 1997 |
Guéhenneux F, Duret L, Callanan MB, Bouhas R, Hayette S, Berthet C, Samarut C, Rimokh R, Birot AM, Wang Q, Magaud JP, Rouault JP. Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle. Leukemia. 11: 370-5. PMID 9067576 DOI: 10.1038/Sj.Leu.2400599 |
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| 1996 |
Duret L, Gasteiger E, Perrière G. LALNVIEW: a graphical viewer for pairwise sequence alignments. Computer Applications in the Biosciences : Cabios. 12: 507-10. PMID 9021269 DOI: 10.1093/Bioinformatics/12.6.507 |
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| 1996 |
Graur D, Duret L, Gouy M. Phylogenetic position of the order Lagomorpha (rabbits, hares and allies) Nature. 379: 333-5. PMID 8552186 DOI: 10.1038/379333A0 |
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| 1995 |
Michaille JJ, Gouy M, Blanchet S, Duret L. Isolation and characterization of a cDNA encoding a chicken actin-like protein. Gene. 154: 205-9. PMID 7890165 DOI: 10.1016/0378-1119(94)00865-P |
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| 1995 |
Duret L, Mouchiroud D, Gautier C. Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. Journal of Molecular Evolution. 40: 308-17. PMID 7723057 DOI: 10.1007/Bf00163235 |
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| 1994 |
Rimokh R, Berger F, Bastard C, Klein B, French M, Archimbaud E, Rouault JP, Santa Lucia B, Duret L, Vuillaume M, Coiffier B, Bryon PA, Magaud JP. Rearrangement of CCND1 (BCL1/PRAD1) 3' untranslated region in mantle-cell lymphomas and t(11q13)-associated leukemias Blood. 83: 3689-3696. PMID 8204893 DOI: 10.1182/Blood.V83.12.3689.Bloodjournal83123689 |
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| 1994 |
Rousie D, Hache JC, Foucart H, Dumousseau T, Maes JM, Duret L, Donazzan M. Craniofacial asymmetry and masticatory apparatus pain-dysfunction syndrome | Les asymétries cranio-faciales et le syndrome algo-dysfonctionnel de l'appareil manducateur Revue De Stomatologie Et De Chirurgie Maxillo-Faciale. 95: 176-179. PMID 8036421 |
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| 1994 |
Duret L, Mouchiroud D, Gouy M. HOVERGEN: a database of homologous vertebrate genes. Nucleic Acids Research. 22: 2360-5. PMID 8036164 DOI: 10.1093/Nar/22.12.2360 |
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| 1993 |
Duret L, Dorkeld F, Gautier C. Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression. Nucleic Acids Research. 21: 2315-22. PMID 8506129 DOI: 10.1093/Nar/21.10.2315 |
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| 1993 |
Rouault JP, Samarut C, Duret L, Tessa C, Samarut J, Magaud JP. Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3' non-coding regions Gene. 129: 303-306. PMID 8325512 DOI: 10.1016/0378-1119(93)90284-A |
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| 1992 |
Rouault JP, Rimokh R, Tessa C, Paranhos G, Ffrench M, Duret L, Garoccio M, Germain D, Samarut J, Magaud JP. BTG1, a member of a new family of antiproliferative genes Embo Journal. 11: 1663-1670. PMID 1373383 DOI: 10.1002/J.1460-2075.1992.Tb05213.X |
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| 1969 |
Duret LR. The internist and psychosomatic medicine | L'interniste devant la medecine psychosomatique Bruxelles Medical. 49: 145-157. PMID 5788552 |
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| 1960 |
DURET L, ELBAUM S, JACOBS E, LE CLUYSE R, VAN LERBERGHE R. [Reflections on the practical value of gastroscopy]. Acta Gastro-Enterologica Belgica. 23: 950-9. PMID 13725186 |
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