| Year |
Citation |
Score |
| 2023 |
Bremer E, Calteau A, Danchin A, Harwood C, Helmann JD, Médigue C, Palsson BO, Sekowska A, Vallenet D, Zuniga A, Zuniga C. A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century. Microbial Biotechnology. PMID 37002859 DOI: 10.1111/1751-7915.14257 |
0.455 |
|
| 2022 |
Roche D, Calteau A, Vallenet D. Analyzing Prokaryotic Transcriptomics in the Light of Genome Data with the MicroScope Platform. Methods in Molecular Biology (Clifton, N.J.). 2605: 241-270. PMID 36520398 DOI: 10.1007/978-1-0716-2871-3_13 |
0.504 |
|
| 2021 |
Schorn MA, Verhoeven S, Ridder L, Huber F, Acharya DD, Aksenov AA, Aleti G, Moghaddam JA, Aron AT, Aziz S, Bauermeister A, Bauman KD, Baunach M, Beemelmanns C, Beman JM, ... ... Calteau A, et al. A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology. PMID 33589842 DOI: 10.1038/s41589-020-00724-z |
0.324 |
|
| 2020 |
Bazin A, Gautreau G, Médigue C, Vallenet D, Calteau A. panRGP: a pangenome-based method to predict genomic islands and explore their diversity. Bioinformatics (Oxford, England). 36: i651-i658. PMID 33381850 DOI: 10.1093/bioinformatics/btaa792 |
0.557 |
|
| 2020 |
Gautreau G, Bazin A, Gachet M, Planel R, Burlot L, Dubois M, Perrin A, Médigue C, Calteau A, Cruveiller S, Matias C, Ambroise C, Rocha EPC, Vallenet D. PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph. Plos Computational Biology. 16: e1007732. PMID 32191703 DOI: 10.1371/Journal.Pcbi.1007732 |
0.599 |
|
| 2019 |
Li M, Calteau A, Semchonok DA, Witt TA, Nguyen JT, Sassoon N, Boekema EJ, Whitelegge J, Gugger M, Bruce BD. Physiological and evolutionary implications of tetrameric photosystem I in cyanobacteria. Nature Plants. 5: 1309-1319. PMID 31819227 DOI: 10.1038/S41477-019-0566-X |
0.413 |
|
| 2019 |
Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, et al. MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. Nucleic Acids Research. PMID 31647104 DOI: 10.1093/nar/gkz926 |
0.544 |
|
| 2018 |
Partensky F, Six C, Ratin M, Garczarek L, Vaulot D, Probert I, Calteau A, Gourvil P, Marie D, Grébert T, Bouchier C, Le Panse S, Gachenot M, Rodríguez F, Garrido JL. A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle. Scientific Reports. 8: 9142. PMID 29904088 DOI: 10.1038/S41598-018-27542-7 |
0.303 |
|
| 2017 |
Lassalle F, Planel R, Penel S, Chapulliot D, Barbe V, Dubost A, Calteau A, Vallenet D, Mornico D, Bigot T, Guéguen L, Vial L, Muller D, Daubin V, Nesme X. Ancestral genome estimation reveals the history of ecological diversification in Agrobacterium. Genome Biology and Evolution. PMID 29220487 DOI: 10.1093/Gbe/Evx255 |
0.706 |
|
| 2017 |
Ficko-Blean E, Préchoux A, Thomas F, Rochat T, Larocque R, Zhu Y, Stam M, Génicot S, Jam M, Calteau A, Viart B, Ropartz D, Pérez-Pascual D, Correc G, Matard-Mann M, et al. Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria. Nature Communications. 8: 1685. PMID 29162826 DOI: 10.1038/S41467-017-01832-6 |
0.515 |
|
| 2017 |
Médigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. Briefings in Bioinformatics. PMID 28968784 DOI: 10.1093/Bib/Bbx113 |
0.591 |
|
| 2017 |
Rochat T, Fujiwara-Nagata E, Calvez S, Dalsgaard I, Madsen L, Calteau A, Lunazzi A, Nicolas P, Wiklund T, Bernardet JF, Duchaud E. Genomic Characterization of Flavobacterium psychrophilum Serotypes and Development of a Multiplex PCR-Based Serotyping Scheme. Frontiers in Microbiology. 8: 1752. PMID 28955320 DOI: 10.3389/fmicb.2017.01752 |
0.323 |
|
| 2017 |
Pancrace C, Jokela J, Sassoon N, Ganneau C, Desnos-Ollivier M, Wahlsten M, Humisto A, Calteau A, Bay S, Fewer DP, Sivonen K, Gugger M. Rearranged Biosynthetic Gene Cluster and Synthesis of Hassallidin E in Planktothrix serta PCC 8927. Acs Chemical Biology. PMID 28489343 DOI: 10.1021/Acschembio.7B00093 |
0.472 |
|
| 2017 |
Pancrace C, Barny MA, Ueoka R, Calteau A, Scalvenzi T, Pédron J, Barbe V, Piel J, Humbert JF, Gugger M. Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains. Scientific Reports. 7: 41181. PMID 28117406 DOI: 10.1038/Srep41181 |
0.499 |
|
| 2016 |
Vallenet D, Calteau A, Cruveiller S, Gachet M, Lajus A, Josso A, Mercier J, Renaux A, Rollin J, Rouy Z, Roche D, Scarpelli C, Médigue C. MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. Nucleic Acids Research. PMID 27899624 DOI: 10.1093/Nar/Gkw1101 |
0.574 |
|
| 2015 |
Lemire A, Goudenège D, Versigny T, Petton B, Calteau A, Labreuche Y, Le Roux F. Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters. The Isme Journal. 9: 1523-31. PMID 25489729 DOI: 10.1038/Ismej.2014.233 |
0.398 |
|
| 2014 |
Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J, Gugger M. Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria. Bmc Genomics. 15: 977. PMID 25404466 DOI: 10.1186/1471-2164-15-977 |
0.495 |
|
| 2014 |
Goudenège D, Travers MA, Lemire A, Petton B, Haffner P, Labreuche Y, Tourbiez D, Mangenot S, Calteau A, Mazel D, Nicolas JL, Jacq A, Le Roux F. A single regulatory gene is sufficient to alter Vibrio aestuarianus pathogenicity in oysters. Environmental Microbiology. PMID 25384557 DOI: 10.1111/1462-2920.12699 |
0.454 |
|
| 2013 |
Humbert JF, Barbe V, Latifi A, Gugger M, Calteau A, Coursin T, Lajus A, Castelli V, Oztas S, Samson G, Longin C, Medigue C, de Marsac NT. A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa. Plos One. 8: e70747. PMID 23950996 DOI: 10.1371/Journal.Pone.0070747 |
0.653 |
|
| 2013 |
Leikoski N, Liu L, Jokela J, Wahlsten M, Gugger M, Calteau A, Permi P, Kerfeld CA, Sivonen K, Fewer DP. Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides. Chemistry & Biology. 20: 1033-43. PMID 23911585 DOI: 10.1016/J.Chembiol.2013.06.015 |
0.402 |
|
| 2013 |
Goudenège D, Labreuche Y, Krin E, Ansquer D, Mangenot S, Calteau A, Médigue C, Mazel D, Polz MF, Le Roux F. Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits. The Isme Journal. 7: 1985-96. PMID 23739050 DOI: 10.1038/Ismej.2013.90 |
0.549 |
|
| 2013 |
Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, et al. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 110: 1053-8. PMID 23277585 DOI: 10.1073/Pnas.1217107110 |
0.611 |
|
| 2013 |
Vallenet D, Belda E, Calteau A, Cruveiller S, Engelen S, Lajus A, Le Fèvre F, Longin C, Mornico D, Roche D, Rouy Z, Salvignol G, Scarpelli C, Thil Smith AA, Weiman M, et al. MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data. Nucleic Acids Research. 41: D636-47. PMID 23193269 DOI: 10.1093/Nar/Gks1194 |
0.536 |
|
| 2013 |
Kristiansen R, Nguyen HT, Saunders AM, Nielsen JL, Wimmer R, Le VQ, McIlroy SJ, Petrovski S, Seviour RJ, Calteau A, Nielsen KL, Nielsen PH. A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal. The Isme Journal. 7: 543-54. PMID 23178666 DOI: 10.1038/Ismej.2012.136 |
0.341 |
|
| 2012 |
Normand P, Gury J, Pujic P, Chouaia B, Crotti E, Brusetti L, Daffonchio D, Vacherie B, Barbe V, Médigue C, Calteau A, Ghodhbane-Gtari F, Essoussi I, Nouioui I, Abbassi-Ghozzi I, et al. Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces. Journal of Bacteriology. 194: 4773-4. PMID 22887672 DOI: 10.1128/Jb.01029-12 |
0.506 |
|
| 2011 |
Wisniewski-Dyé F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, et al. Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments. Plos Genetics. 7: e1002430. PMID 22216014 DOI: 10.1371/Journal.Pgen.1002430 |
0.589 |
|
| 2011 |
Bertin PN, Heinrich-Salmeron A, Pelletier E, Goulhen-Chollet F, Arsène-Ploetze F, Gallien S, Lauga B, Casiot C, Calteau A, Vallenet D, Bonnefoy V, Bruneel O, Chane-Woon-Ming B, Cleiss-Arnold J, Duran R, et al. Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics. The Isme Journal. 5: 1735-47. PMID 21562598 DOI: 10.1038/Ismej.2011.51 |
0.467 |
|
| 2011 |
Engel P, Salzburger W, Liesch M, Chang CC, Maruyama S, Lanz C, Calteau A, Lajus A, Médigue C, Schuster SC, Dehio C. Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella. Plos Genetics. 7: e1001296. PMID 21347280 DOI: 10.1371/Journal.Pgen.1001296 |
0.392 |
|
| 2010 |
Ogier JC, Calteau A, Forst S, Goodrich-Blair H, Roche D, Rouy Z, Suen G, Zumbihl R, Givaudan A, Tailliez P, Médigue C, Gaudriault S. Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus. Bmc Genomics. 11: 568. PMID 20950463 DOI: 10.1186/1471-2164-11-568 |
0.595 |
|
| 2010 |
Méjean A, Mazmouz R, Mann S, Calteau A, Médigue C, Ploux O. The genome sequence of the cyanobacterium Oscillatoria sp. PCC 6506 reveals several gene clusters responsible for the biosynthesis of toxins and secondary metabolites. Journal of Bacteriology. 192: 5264-5. PMID 20675499 DOI: 10.1128/Jb.00704-10 |
0.523 |
|
| 2010 |
Remenant B, Coupat-Goutaland B, Guidot A, Cellier G, Wicker E, Allen C, Fegan M, Pruvost O, Elbaz M, Calteau A, Salvignol G, Mornico D, Mangenot S, Barbe V, Médigue C, et al. Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence. Bmc Genomics. 11: 379. PMID 20550686 DOI: 10.1186/1471-2164-11-379 |
0.603 |
|
| 2009 |
Berglund EC, Frank AC, Calteau A, Vinnere Pettersson O, Granberg F, Eriksson AS, Näslund K, Holmberg M, Lindroos H, Andersson SG. Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. Plos Genetics. 5: e1000546. PMID 19578403 DOI: 10.1371/Journal.Pgen.1000546 |
0.61 |
|
| 2009 |
Lescat M, Calteau A, Hoede C, Barbe V, Touchon M, Rocha E, Tenaillon O, Médigue C, Johnson JR, Denamur E. A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A. Antimicrobial Agents and Chemotherapy. 53: 2283-8. PMID 19364861 DOI: 10.1128/Aac.00123-09 |
0.519 |
|
| 2009 |
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, et al. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. Plos Genetics. 5: e1000344. PMID 19165319 DOI: 10.1371/Journal.Pgen.1000344 |
0.578 |
|
| 2008 |
Marais GA, Calteau A, Tenaillon O. Mutation rate and genome reduction in endosymbiotic and free-living bacteria. Genetica. 134: 205-10. PMID 18046510 DOI: 10.1007/S10709-007-9226-6 |
0.532 |
|
| 2007 |
Fall S, Mercier A, Bertolla F, Calteau A, Gueguen L, Perrière G, Vogel TM, Simonet P. Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms. Plos One. 2: e1055. PMID 17957239 DOI: 10.1371/Journal.Pone.0001055 |
0.707 |
|
| 2005 |
Calteau A, Gouy M, Perrière G. Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea. Journal of Molecular Evolution. 60: 557-65. PMID 15983865 DOI: 10.1007/S00239-004-0094-8 |
0.679 |
|
| 2004 |
Calteau A, Daubin V, Perrieère G. Super-tree approach for studying the phylogeny of prokaryotes: New results on completely sequenced genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3039: 700-708. |
0.658 |
|
| 2003 |
Bénit L, Calteau A, Heidmann T. Characterization of the low-copy HERV-Fc family: evidence for recent integrations in primates of elements with coding envelope genes. Virology. 312: 159-68. PMID 12890629 DOI: 10.1016/S0042-6822(03)00163-6 |
0.416 |
|
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