| Year |
Citation |
Score |
| 2020 |
Zhang S, Shao J, Yu D, Qiu X, Zhang J. MatchMixeR: A Cross-platform Normalization Method for Gene Expression Data Integration. Bioinformatics (Oxford, England). PMID 31904810 DOI: 10.1093/Bioinformatics/Btz974 |
0.325 |
|
| 2019 |
Sonawane AR, Tian L, Chu CY, Qiu X, Wang L, Holden-Wiltse J, Grier A, Gill SR, Caserta MT, Falsey AR, Topham DJ, Walsh EE, Mariani TJ, Weiss ST, Silverman EK, et al. Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection. Scientific Reports. 9: 13824. PMID 31554845 DOI: 10.1038/S41598-019-50217-W |
0.327 |
|
| 2019 |
Chen G, Ramírez JC, Deng N, Qiu X, Wu C, Zheng WJ, Wu H. Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis. Database : the Journal of Biological Databases and Curation. 2019. PMID 30649296 DOI: 10.1093/Database/Bay145 |
0.31 |
|
| 2017 |
Liu Y, Zhang J, Qiu X. Super-delta: a new differential gene expression analysis procedure with robust data normalization. Bmc Bioinformatics. 18: 582. PMID 29268715 DOI: 10.1186/S12859-017-1992-2 |
0.335 |
|
| 2017 |
Zhang Y, Topham DJ, Thakar J, Qiu X. FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. Bioinformatics (Oxford, England). PMID 28334094 DOI: 10.1093/Bioinformatics/Btx104 |
0.319 |
|
| 2016 |
Chu CY, Qiu X, Wang L, Bhattacharya S, Lofthus G, Corbett A, Holden-Wiltse J, Grier A, Tesini B, Gill SR, Falsey AR, Caserta MT, Walsh EE, Mariani TJ. The Healthy Infant Nasal Transcriptome: A Benchmark Study. Scientific Reports. 6: 33994. PMID 27658638 DOI: 10.1038/Srep33994 |
0.335 |
|
| 2016 |
Liu B, Qiu X, Zhu T, Tian W, Hu R, Ekholm S, Schifitto G, Zhong J. Spatial regression analysis of serial DTI for subject-specific longitudinal changes of neurodegenerative disease. Neuroimage. Clinical. 11: 291-301. PMID 26977399 DOI: 10.1016/J.Nicl.2016.02.009 |
0.314 |
|
| 2015 |
Qiu X, Wu S, Hilchey SP, Thakar J, Liu ZP, Welle SL, Henn AD, Wu H, Zand MS. Diversity in Compartmental Dynamics of Gene Regulatory Networks: The Immune Response in Primary Influenza A Infection in Mice. Plos One. 10: e0138110. PMID 26413862 DOI: 10.1371/Journal.Pone.0138110 |
0.335 |
|
| 2014 |
Qiu X, Hu R, Wu Z. Evaluation of bias-variance trade-off for commonly used post-summarizing normalization procedures in large-scale gene expression studies. Plos One. 9: e99380. PMID 24941114 DOI: 10.1371/Journal.Pone.0099380 |
0.321 |
|
| 2014 |
Wu S, Liu ZP, Qiu X, Wu H. Modeling genome-wide dynamic regulatory network in mouse lungs with influenza infection using high-dimensional ordinary differential equations. Plos One. 9: e95276. PMID 24802016 DOI: 10.1371/Journal.Pone.0095276 |
0.34 |
|
| 2013 |
Qiu X, Wu H, Hu R. The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis. Bmc Bioinformatics. 14: 124. PMID 23578321 DOI: 10.1186/1471-2105-14-124 |
0.322 |
|
| 2013 |
Qiu X, Klebanov L. Gene selection with the δ-sequence method. Methods in Molecular Biology (Clifton, N.J.). 972: 57-71. PMID 23385531 DOI: 10.1007/978-1-60327-337-4_4 |
0.312 |
|
| 2011 |
Needham M, Hu R, Dwarkadas S, Qiu X. Hierarchical parallelization of gene differential association analysis. Bmc Bioinformatics. 12: 374. PMID 21936916 DOI: 10.1186/1471-2105-12-374 |
0.307 |
|
| 2010 |
Hu R, Qiu X, Glazko G. A new gene selection procedure based on the covariance distance. Bioinformatics (Oxford, England). 26: 348-54. PMID 19996162 DOI: 10.1093/Bioinformatics/Btp672 |
0.341 |
|
| 2009 |
Hu R, Qiu X, Glazko G, Klebanov L, Yakovlev A. Detecting intergene correlation changes in microarray analysis: a new approach to gene selection. Bmc Bioinformatics. 10: 20. PMID 19146700 DOI: 10.1186/1471-2105-10-20 |
0.327 |
|
| 2008 |
Klebanov L, Qiu X, Yakovlev A. Testing differential expression in nonoverlapping gene pairs: a new perspective for the empirical Bayes method. Journal of Bioinformatics and Computational Biology. 6: 301-16. PMID 18464324 DOI: 10.1142/S0219720008003436 |
0.351 |
|
| 2006 |
Almudevar A, Klebanov LB, Qiu X, Salzman P, Yakovlev AY. Utility of correlation measures in analysis of gene expression. Neurorx : the Journal of the American Society For Experimental Neurotherapeutics. 3: 384-95. PMID 16815221 DOI: 10.1016/J.Nurx.2006.05.037 |
0.344 |
|
| 2006 |
Qiu X, Xiao Y, Gordon A, Yakovlev A. Assessing stability of gene selection in microarray data analysis. Bmc Bioinformatics. 7: 50. PMID 16451725 DOI: 10.1186/1471-2105-7-50 |
0.312 |
|
| 2005 |
Qiu X, Klebanov L, Yakovlev A. Correlation between gene expression levels and limitations of the empirical bayes methodology for finding differentially expressed genes. Statistical Applications in Genetics and Molecular Biology. 4: Article34. PMID 16646853 DOI: 10.2202/1544-6115.1157 |
0.355 |
|
| 2005 |
Qiu X, Brooks AI, Klebanov L, Yakovlev N. The effects of normalization on the correlation structure of microarray data. Bmc Bioinformatics. 6: 120. PMID 15904488 DOI: 10.1186/1471-2105-6-120 |
0.343 |
|
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