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Larry M. York, Ph.D. - Publications

Affiliations: 
2014 Pennsylvania State University, State College, PA, United States 
Area:
Ecology Biology, Plant Culture Agriculture
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Weihs BJ, Heuschele DJ, Tang Z, York LM, Zhang Z, Xu Z. The State of the Art in Root System Architecture Image Analysis Using Artificial Intelligence: A Review. Plant Phenomics (Washington, D.C.). 6: 0178. PMID 38711621 DOI: 10.34133/plantphenomics.0178  0.516
2024 Fusi R, Milner SG, Rosignoli S, Bovina R, De Jesus Vieira Teixeira C, Lou H, Atkinson BS, Borkar AN, York LM, Jones DH, Sturrock CJ, Stein N, Mascher M, Tuberosa R, O'Connor D, et al. The auxin efflux carrier PIN1a regulates vascular patterning in cereal roots. The New Phytologist. PMID 38666346 DOI: 10.1111/nph.19777  0.306
2023 Lagergren J, Pavicic M, Chhetri HB, York LM, Hyatt D, Kainer D, Rutter EM, Flores K, Bailey-Bale J, Klein M, Taylor G, Jacobson D, Streich J. Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in . Plant Phenomics (Washington, D.C.). 5: 0072. PMID 37519935 DOI: 10.34133/plantphenomics.0072  0.341
2023 Yao T, Zhang J, Yates TB, Shrestha HK, Engle NL, Ployet R, John C, Feng K, Bewg WP, Chen MSS, Lu H, Harding SA, Qiao Z, Jawdy SS, Shu M, ... ... York LM, et al. Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus. The New Phytologist. PMID 37488708 DOI: 10.1111/nph.19126  0.412
2023 O'Leary BM, Scafaro AP, York LM. High-throughput, dynamic, multi-dimensional: an expanding repertoire of plant respiration measurements. Plant Physiology. PMID 36638140 DOI: 10.1093/plphys/kiac580  0.336
2022 Fusi R, Rosignoli S, Lou H, Sangiorgi G, Bovina R, Pattem JK, Borkar AN, Lombardi M, Forestan C, Milner SG, Davis JL, Lale A, Kirschner GK, Swarup R, Tassinari A, ... ... York LM, et al. Root angle is controlled by in cereal crops employing an antigravitropic mechanism. Proceedings of the National Academy of Sciences of the United States of America. 119: e2201350119. PMID 35881796 DOI: 10.1073/pnas.2201350119  0.6
2022 Prince S, Anower MR, Motes CM, Hernandez TD, Liao F, Putman L, Mattson R, Seethepalli A, Shah K, Komp M, Mehta P, York LM, Young C, Monteros MJ. Intraspecific Variation for Leaf Physiological and Root Morphological Adaptation to Drought Stress in Alfalfa ( L.). Frontiers in Plant Science. 13: 795011. PMID 35599860 DOI: 10.3389/fpls.2022.795011  0.436
2022 Xu Z, York LM, Seethepalli A, Bucciarelli B, Cheng H, Samac DA. Objective Phenotyping of Root System Architecture Using Image Augmentation and Machine Learning in Alfalfa (Medicago sativa L.). Plant Phenomics (Washington, D.C.). 2022: 9879610. PMID 35479182 DOI: 10.34133/2022/9879610  0.3
2022 Bengough AG, Blancaflor EB, Brunner I, Comas LH, Freschet GT, Gessler A, Iversen CM, Janěcek Š, Kliměsová J, Lambers H, McCormack ML, Meier IC, Mommer L, Pagès L, Poorter H, ... ... York LM, et al. Corrigendum. The New Phytologist. PMID 35478324 DOI: 10.1111/nph.18126  0.582
2022 York LM, Griffiths M, Maaz TM. Whole-plant phenotypic engineering: moving beyond ratios for multi-objective optimization of nutrient use efficiency. Current Opinion in Biotechnology. 75: 102682. PMID 35104719 DOI: 10.1016/j.copbio.2022.102682  0.503
2022 Maqbool S, Hassan MA, Xia X, York LM, Rasheed A, He Z. Root system architecture in cereals: progress, challenges and perspective. The Plant Journal : For Cell and Molecular Biology. PMID 35020968 DOI: 10.1111/tpj.15669  0.505
2021 Roy S, Griffiths M, Torres-Jerez I, Sanchez B, Antonelli E, Jain D, Krom N, Zhang S, York LM, Scheible WR, Udvardi M. Application of Synthetic Peptide CEP1 Increases Nutrient Uptake Rates Along Plant Roots. Frontiers in Plant Science. 12: 793145. PMID 35046980 DOI: 10.3389/fpls.2021.793145  0.388
2021 Seethepalli A, Dhakal K, Griffiths M, Guo H, Freschet GT, York LM. RhizoVision Explorer: open-source software for root image analysis and measurement standardization. Aob Plants. 13: plab056. PMID 34804466 DOI: 10.1093/aobpla/plab056  0.455
2021 Freschet GT, Pagès L, Iversen CM, Comas LH, Rewald B, Roumet C, Klimešová J, Zadworny M, Poorter H, Postma JA, Adams TS, Bagniewska-Zadworna A, Bengough AG, Blancaflor EB, Brunner I, ... ... York LM, et al. A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements. The New Phytologist. 232: 973-1122. PMID 34608637 DOI: 10.1111/nph.17572  0.728
2021 Griffiths M, Wang X, Dhakal K, Guo H, Seethepalli A, Kang Y, York LM. Interactions among rooting traits for deep water and nitrogen uptake in upland and lowland ecotypes of switchgrass (Panicum virgatum L.). Journal of Experimental Botany. PMID 34604906 DOI: 10.1093/jxb/erab437  0.46
2021 Weigelt A, Mommer L, Andraczek K, Iversen CM, Bergmann J, Bruelheide H, Fan Y, Freschet GT, Guerrero-Ramírez NR, Kattge J, Kuyper TW, Laughlin DC, Meier IC, van der Plas F, Poorter H, ... ... York LM, et al. An integrated framework of plant form and function: The belowground perspective. The New Phytologist. PMID 34197626 DOI: 10.1111/nph.17590  0.546
2021 Laughlin DC, Mommer L, Sabatini FM, Bruelheide H, Kuyper TW, McCormack ML, Bergmann J, Freschet GT, Guerrero-Ramírez NR, Iversen CM, Kattge J, Meier IC, Poorter H, Roumet C, Semchenko M, ... ... York LM, et al. Root traits explain plant species distributions along climatic gradients yet challenge the nature of ecological trade-offs. Nature Ecology & Evolution. PMID 34112996 DOI: 10.1038/s41559-021-01471-7  0.309
2021 Guo H, Ayalew H, Seethepalli A, Dhakal K, Griffiths M, Ma XF, York LM. Functional phenomics and genetics of the root economics space in winter wheat using high-throughput phenotyping of respiration and architecture. The New Phytologist. PMID 33683730 DOI: 10.1111/nph.17329  0.505
2021 Bardhan K, York LM, Hasanuzzaman M, Parekh V, Jena S, Pandya MN. Can smart nutrient applications optimize the plant's hidden half to improve drought resistance? Physiologia Plantarum. PMID 33432608 DOI: 10.1111/ppl.13332  0.506
2020 Griffiths M, Roy S, Guo H, Seethepalli A, Huhman D, Ge Y, Sharp RE, Fritschi FB, York LM. A multiple ion-uptake phenotyping platform reveals shared mechanisms affecting nutrient uptake by roots. Plant Physiology. PMID 33793942 DOI: 10.1093/plphys/kiaa080  0.447
2020 Dhanapal AP, York LM, Hames KA, Fritschi FB. Genome-Wide Association Study of Topsoil Root System Architecture in Field-Grown Soybean [ (L.) Merr.]. Frontiers in Plant Science. 11: 590179. PMID 33643326 DOI: 10.3389/fpls.2020.590179  0.369
2020 Burridge JD, Black CK, Nord EA, Postma JA, Sidhu JS, York LM, Lynch JP. An Analysis of Soil Coring Strategies to Estimate Root Depth in Maize () and Common Bean (). Plant Phenomics (Washington, D.C.). 2020: 3252703. PMID 33313549 DOI: 10.34133/2020/3252703  0.718
2020 Seethepalli A, Guo H, Liu X, Griffiths M, Almtarfi H, Li Z, Liu S, Zare A, Fritschi FB, Blancaflor EB, Ma XF, York LM. RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping. Plant Phenomics (Washington, D.C.). 2020: 3074916. PMID 33313547 DOI: 10.34133/2020/3074916  0.415
2020 Freschet GT, Roumet C, Comas LH, Weemstra M, Bengough AG, Rewald B, Bardgett RD, De Deyn GB, Johnson D, Klimešová J, Lukac M, McCormack ML, Meier IC, Pagès L, Poorter H, ... ... York LM, et al. Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs. The New Phytologist. PMID 33159479 DOI: 10.1111/nph.17072  0.727
2020 Fonseca JP, Lee HK, Boschiero C, Griffiths M, Lee S, Zhao PX, York L, Mysore KS. Iron-sulfur cluster protein NITROGEN FIXATION S-LIKE 1 and its interactor FRATAXIN function in plant immunity. Plant Physiology. PMID 32943465 DOI: 10.1104/Pp.20.00950  0.318
2020 Bergmann J, Weigelt A, van der Plas F, Laughlin DC, Kuyper TW, Guerrero-Ramirez N, Valverde-Barrantes OJ, Bruelheide H, Freschet GT, Iversen CM, Kattge J, McCormack ML, Meier IC, Rillig MC, Roumet C, ... ... York LM, et al. The fungal collaboration gradient dominates the root economics space in plants. Science Advances. 6. PMID 32937432 DOI: 10.1126/Sciadv.Aba3756  0.483
2020 Griffiths M, York L. Targeting root ion uptake kinetics to increase plant productivity and nutrient use efficiency. Plant Physiology. PMID 32029523 DOI: 10.1104/Pp.19.01496  0.486
2020 Seethepalli A, Guo H, Liu X, Griffiths M, Almtarfi H, Li Z, Liu S, Zare A, Fritschi FB, Blancaflor EB, Ma X, York LM. RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown Phenotyping Plant Phenomics. 2020: 1-15. DOI: 10.34133/2020/3074916  0.416
2020 Bergmann J, Weigelt A, van der Plas F, Laughlin DC, Kuyper TW, Guerrero-Ramirez N, Valverde-Barrantes OJ, Bruelheide H, Freschet GT, Iversen CM, Kattge J, McCormack ML, Meier IC, Rillig MC, Roumet C, ... ... York LM, et al. The fungal collaboration gradient dominates the root economics space in plants Science Advances. 6: eaba3756. DOI: 10.1126/sciadv.aba3756  0.392
2020 Guerrero‐Ramírez NR, Mommer L, Freschet GT, Iversen CM, McCormack ML, Kattge J, Poorter H, Plas Fvd, Bergmann J, Kuyper TW, York LM, Bruelheide H, Laughlin DC, Meier IC, Roumet C, et al. Global root traits (GRooT) database Global Ecology and Biogeography. DOI: 10.1111/Geb.13179  0.474
2019 Guo H, York LM. Maize with fewer nodal roots allocates mass to more lateral and deep roots that improve nitrogen uptake and shoot growth. Journal of Experimental Botany. PMID 31145788 DOI: 10.1093/Jxb/Erz258  0.504
2019 Mattupalli C, Seethepalli A, York LM, Young CA. Digital Imaging to Evaluate Root System Architectural Changes Associated with Soil Biotic Factors Phytobiomes Journal. 3: 102-111. DOI: 10.1094/PBIOMES-12-18-0062-R  0.469
2019 Le Marié CA, York LM, Strigens A, Malosetti M, Camp K, Giuliani S, Lynch JP, Hund A. Shovelomics root traits assessed on the EURoot maize panel are highly heritable across environments but show low genotype-by-nitrogen interaction Euphytica. 215. DOI: 10.1007/S10681-019-2472-8  0.604
2018 York LM. Functional phenomics: An emerging field integrating high-throughput phenotyping, physiology, and bioinformatics. Journal of Experimental Botany. PMID 30380107 DOI: 10.1093/Jxb/Ery379  0.481
2018 Huang G, Liang W, Sturrock CJ, Pandey BK, Giri J, Mairhofer S, Wang D, Muller L, Tan H, York LM, Yang J, Song Y, Kim YJ, Qiao Y, Xu J, et al. Rice actin binding protein RMD controls crown root angle in response to external phosphate. Nature Communications. 9: 2346. PMID 29892032 DOI: 10.1038/S41467-018-04710-X  0.436
2018 York LM. Phenotyping Crop Root Crowns: General Guidance and Specific Protocols for Maize, Wheat, and Soybean. Methods in Molecular Biology (Clifton, N.J.). 1761: 23-32. PMID 29525946 DOI: 10.1007/978-1-4939-7747-5_2  0.575
2016 York LM, Silberbush M, Lynch JP. Spatiotemporal variation of nitrate uptake kinetics within the maize (Zea mays L.) root system is associated with greater nitrate uptake and interactions with architectural phenes. Journal of Experimental Botany. PMID 27037741 DOI: 10.1093/Jxb/Erw133  0.673
2016 York LM, Carminati A, Mooney SJ, Ritz K, Bennett MJ. The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots. Journal of Experimental Botany. PMID 26980751 DOI: 10.1093/Jxb/Erw108  0.526
2015 York LM, Lynch JP. Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition. Journal of Experimental Botany. 66: 5493-505. PMID 26041317 DOI: 10.1093/Jxb/Erv241  0.697
2015 York LM, Galindo-Castañeda T, Schussler JR, Lynch JP. Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress. Journal of Experimental Botany. 66: 2347-58. PMID 25795737 DOI: 10.1093/Jxb/Erv074  0.659
2015 Colombi T, Kirchgessner N, Le Marié CA, York LM, Lynch JP, Hund A. Next generation shovelomics: set up a tent and REST Plant and Soil. DOI: 10.1007/S11104-015-2379-7  0.617
2014 Zhang C, Postma JA, York LM, Lynch JP. Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture. Annals of Botany. 114: 1719-33. PMID 25274551 DOI: 10.1093/Aob/Mcu191  0.695
2014 Bucksch A, Burridge J, York LM, Das A, Nord E, Weitz JS, Lynch JP. Image-based high-throughput field phenotyping of crop roots. Plant Physiology. 166: 470-86. PMID 25187526 DOI: 10.1104/Pp.114.243519  0.734
2013 York LM, Nord EA, Lynch JP. Integration of root phenes for soil resource acquisition. Frontiers in Plant Science. 4: 355. PMID 24062755 DOI: 10.3389/Fpls.2013.00355  0.744
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