Paul Stothard - Publications

Agriculture, Food, and Nutritional Science University of Alberta, Edmonton, Alberta, Canada 

100 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mukiibi R, Johnston D, Vinsky M, Fitzsimmons C, Stothard P, Waters SM, Li C. Bovine hepatic miRNAome profiling and differential miRNA expression analyses between beef steers with divergent feed efficiency phenotypes. Scientific Reports. 10: 19309. PMID 33168877 DOI: 10.1038/s41598-020-73885-5  0.4
2020 Zhang F, Wang Y, Mukiibi R, Chen L, Vinsky M, Plastow G, Basarab J, Stothard P, Li C. Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits. Bmc Genomics. 21: 36. PMID 31931702 DOI: 10.1186/S12864-019-6362-1  0.4
2020 Wang Y, Zhang F, Mukiibi R, Chen L, Vinsky M, Plastow G, Basarab J, Stothard P, Li C. Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: II: carcass merit traits. Bmc Genomics. 21: 38. PMID 31931697 DOI: 10.1186/S12864-019-6273-1  0.4
2019 Mukiibi R, Vinsky M, Keogh K, Fitzsimmons C, Stothard P, Waters SM, Li C. Liver transcriptome profiling of beef steers with divergent growth rate, feed intake or metabolic body weight phenotypes. Journal of Animal Science. PMID 31583405 DOI: 10.1093/Jas/Skz315  0.4
2019 Munyaka PM, Kommadath A, Fouhse J, Wilkinson J, Diether N, Stothard P, Estellé J, Rogel-Gaillard C, Plastow G, Willing BP. Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae. Vaccine. PMID 30808565 DOI: 10.1016/J.Vaccine.2019.02.016  0.4
2018 Mukiibi R, Vinsky M, Keogh KA, Fitzsimmons C, Stothard P, Waters SM, Li C. Transcriptome analyses reveal reduced hepatic lipid synthesis and accumulation in more feed efficient beef cattle. Scientific Reports. 8: 7303. PMID 29740082 DOI: 10.1038/S41598-018-25605-3  0.4
2018 Zhang C, Kemp RA, Stothard P, Wang Z, Boddicker N, Krivushin K, Dekkers J, Plastow G. Genomic evaluation of feed efficiency component traits in Duroc pigs using 80K, 650K and whole-genome sequence variants. Genetics, Selection, Evolution : Gse. 50: 14. PMID 29625549 DOI: 10.1186/S12711-018-0387-9  0.4
2018 Abo-Ismail MK, Lansink N, Akanno E, Karisa B, Crowley JJ, Moore S, Bork E, Stothard P, Basarab JA, Plastow G. Development and validation of a small SNP panel for feed efficiency in beef cattle. Journal of Animal Science. PMID 29390120 DOI: 10.1093/Jas/Sky020  0.4
2017 Abo-Ismail MK, Brito LF, Miller SP, Sargolzaei M, Grossi DA, Moore SS, Plastow G, Stothard P, Nayeri S, Schenkel FS. Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle. Genetics, Selection, Evolution : Gse. 49: 82. PMID 29115939 DOI: 10.1186/S12711-017-0356-8  0.4
2017 Ye MH, Bao H, Meng Y, Guan LL, Stothard P, Plastow G. Comparative Transcriptomic Analysis of Porcine Peripheral Blood Reveals Differentially Expressed Genes from the Cytokine-cytokine Receptor Interaction Pathway Related to Health Status. Genome. PMID 28763624 DOI: 10.1139/Gen-2017-0074  0.4
2016 Nayeri S, Sargolzaei M, Abo-Ismail MK, Miller S, Schenkel F, Moore SS, Stothard P. Genome-wide association study for lactation persistency, female fertility, longevity, and lifetime profit index traits in Holstein dairy cattle. Journal of Dairy Science. PMID 27889128 DOI: 10.3168/Jds.2016-11770  0.32
2016 Pathak A, Chauhan A, Blom J, Indest KJ, Jung CM, Stothard P, Bera G, Green SJ, Ogram A. Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation. Plos One. 11: e0161032. PMID 27532207 DOI: 10.1371/Journal.Pone.0161032  0.96
2016 Liang G, Malmuthuge N, Bao H, Stothard P, Griebel PJ, Guan le L. Transcriptome analysis reveals regional and temporal differences in mucosal immune system development in the small intestine of neonatal calves. Bmc Genomics. 17: 602. PMID 27515123 DOI: 10.1186/S12864-016-2957-Y  0.96
2016 Kong RS, Liang G, Chen Y, Stothard P, Guan le L. Transcriptome profiling of the rumen epithelium of beef cattle differing in residual feed intake. Bmc Genomics. 17: 592. PMID 27506548 DOI: 10.1186/S12864-016-2935-4  0.96
2016 Nayeri S, Sargolzaei M, Abo-Ismail MK, May N, Miller SP, Schenkel F, Moore SS, Stothard P. Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle. Bmc Genetics. 17: 75. PMID 27287773 DOI: 10.1186/S12863-016-0386-1  0.96
2016 Wilkinson JM, Bao H, Ladinig A, Hong L, Stothard P, Lunney JK, Plastow GS, Harding JC. Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus. Bmc Genomics. 17: 383. PMID 27207143 DOI: 10.1186/S12864-016-2720-4  0.96
2016 Lu D, Akanno EC, Crowley JJ, Schenkel F, Li H, De Pauw M, Moore SS, Wang Z, Li C, Stothard P, Plastow G, Miller SP, Basarab JA. Accuracy of genomic predictions for feed efficiency traits of beef cattle using 50K and imputed HD genotypes. Journal of Animal Science. 94: 1342-1353. PMID 27135994 DOI: 10.2527/Jas.2015-0126  0.4
2016 Wilkinson JM, Ladinig A, Bao H, Kommadath A, Stothard P, Lunney JK, Harding JC, Plastow GS. Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection. Plos One. 11: e0153615. PMID 27093427 DOI: 10.1371/Journal.Pone.0153615  0.96
2015 Chen L, Ekine-Dzivenu C, Vinsky M, Basarab J, Aalhus J, Dugan ME, Fitzsimmons C, Stothard P, Li C. Genome-wide association and genomic prediction of breeding values for fatty acid composition in subcutaneous adipose and longissimus lumborum muscle of beef cattle. Bmc Genetics. 16: 135. PMID 26589139 DOI: 10.1186/S12863-015-0290-0  0.96
2015 Stothard P, Liao X, Arantes AS, De Pauw M, Coros C, Plastow GS, Sargolzaei M, Crowley JJ, Basarab JA, Schenkel F, Moore S, Miller SP. A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project. Gigascience. 4: 49. PMID 26504517 DOI: 10.1186/S13742-015-0090-5  0.32
2015 Wang Y, Wylie T, Stothard P, Lin G. Whole genome SNP genotype piecemeal imputation. Bmc Bioinformatics. 16: 340. PMID 26498158 DOI: 10.1186/S12859-015-0770-2  0.96
2015 Paradis F, Yue S, Grant JR, Stothard P, Basarab JA, Fitzsimmons C. Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers. Journal of Animal Science. 93: 3331-41. PMID 26440002 DOI: 10.2527/Jas.2015-8975  0.96
2015 Peters DL, Lynch KH, Stothard P, Dennis JJ. The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity. Bmc Genomics. 16: 664. PMID 26335566 DOI: 10.1186/S12864-015-1848-Y  0.96
2015 Bao H, Kommadath A, Liang G, Sun X, Arantes AS, Tuggle CK, Bearson SM, Plastow GS, Stothard P, Guan LL. Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine. Scientific Reports. 5: 12620. PMID 26227241 DOI: 10.1038/Srep12620  0.96
2015 Dorshorst B, Henegar C, Liao X, Sällman Almén M, Rubin CJ, Ito S, Wakamatsu K, Stothard P, Van Doormaal B, Plastow G, Barsh GS, Andersson L. Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene. Plos One. 10: e0128969. PMID 26042826 DOI: 10.1371/Journal.Pone.0128969  0.96
2015 Koltes JE, Fritz-Waters E, Eisley CJ, Choi I, Bao H, Kommadath A, Serão NV, Boddicker NJ, Abrams SM, Schroyen M, Loyd H, Tuggle CK, Plastow GS, Guan L, Stothard P, et al. Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection. Bmc Genomics. 16: 412. PMID 26016888 DOI: 10.1186/S12864-015-1635-9  0.96
2015 Miller JM, Moore SS, Stothard P, Liao X, Coltman DW. Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis). Bmc Genomics. 16: 397. PMID 25990117 DOI: 10.1186/S12864-015-1618-X  0.96
2014 Choi I, Bao H, Kommadath A, Hosseini A, Sun X, Meng Y, Stothard P, Plastow GS, Tuggle CK, Reecy JM, Fritz-Waters E, Abrams SM, Lunney JK, Guan le L. Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. Bmc Genomics. 15: 954. PMID 25374277 DOI: 10.1186/1471-2164-15-954  0.96
2014 Bahitham W, Liao X, Peng F, Bamforth F, Chan A, Mason A, Stone B, Stothard P, Sergi C. Mitochondriome and cholangiocellular carcinoma. Plos One. 9: e104694. PMID 25137133 DOI: 10.1371/Journal.Pone.0104694  0.96
2014 Liao X, Bao H, Meng Y, Plastow G, Moore S, Stothard P. Sequence, structural and expression divergence of duplicate genes in the bovine genome. Plos One. 9: e102868. PMID 25054921 DOI: 10.1371/Journal.Pone.0102868  0.96
2014 Daetwyler HD, Capitan A, Pausch H, Stothard P, van Binsbergen R, Brøndum RF, Liao X, Djari A, Rodriguez SC, Grohs C, Esquerré D, Bouchez O, Rossignol MN, Klopp C, Rocha D, et al. Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nature Genetics. 46: 858-65. PMID 25017103 DOI: 10.1038/Ng.3034  0.96
2014 Choi JW, Liao X, Stothard P, Chung WH, Jeon HJ, Miller SP, Choi SY, Lee JK, Yang B, Lee KT, Han KJ, Kim HC, Jeong D, Oh JD, Kim N, et al. Whole-genome analyses of Korean native and Holstein cattle breeds by massively parallel sequencing. Plos One. 9: e101127. PMID 24992012 DOI: 10.1371/Journal.Pone.0101127  0.96
2014 Kommadath A, Bao H, Arantes AS, Plastow GS, Tuggle CK, Bearson SM, Guan le L, Stothard P. Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding. Bmc Genomics. 15: 452. PMID 24912583 DOI: 10.1186/1471-2164-15-452  0.96
2014 Bao H, Kommadath A, Plastow GS, Tuggle CK, Guan le L, Stothard P. MicroRNA buffering and altered variance of gene expression in response to Salmonella infection. Plos One. 9: e94352. PMID 24718561 DOI: 10.1371/Journal.Pone.0094352  0.96
2014 Liang G, Malmuthuge N, McFadden TB, Bao H, Griebel PJ, Stothard P, Guan le L. Potential regulatory role of microRNAs in the development of bovine gastrointestinal tract during early life. Plos One. 9: e92592. PMID 24682221 DOI: 10.1371/Journal.Pone.0092592  0.96
2014 Zhou C, Dobrinsky J, Tsoi S, Foxcroft GR, Dixon WT, Stothard P, Verstegen J, Dyck MK. Characterization of the altered gene expression profile in early porcine embryos generated from parthenogenesis and somatic cell chromatin transfer. Plos One. 9: e91728. PMID 24633136 DOI: 10.1371/Journal.Pone.0091728  0.96
2014 Abo-Ismail MK, Vander Voort G, Squires JJ, Swanson KC, Mandell IB, Liao X, Stothard P, Moore S, Plastow G, Miller SP. Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle. Bmc Genetics. 15: 14. PMID 24476087 DOI: 10.1186/1471-2156-15-14  0.96
2013 Liao X, Peng F, Forni S, McLaren D, Plastow G, Stothard P. Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 56: 592-8. PMID 24237340 DOI: 10.1139/Gen-2013-0082  0.96
2013 Li M, Tian S, Jin L, Zhou G, Li Y, Zhang Y, Wang T, Yeung CK, Chen L, Ma J, Zhang J, Jiang A, Li J, Zhou C, Zhang J, ... ... Stothard P, et al. Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars. Nature Genetics. 45: 1431-8. PMID 24162736 DOI: 10.1038/Ng.2811  0.96
2013 Bao H, Kommadath A, Sun X, Meng Y, Arantes AS, Plastow GS, Guan LL, Stothard P. Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species. Bmc Genomics. 14: 609. PMID 24020371 DOI: 10.1186/1471-2164-14-609  0.96
2013 Choi JW, Liao X, Park S, Jeon HJ, Chung WH, Stothard P, Park YS, Lee JK, Lee KT, Kim SH, Oh JD, Kim N, Kim TH, Lee HK, Lee SJ. Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels. Molecules and Cells. 36: 203-11. PMID 23912596 DOI: 10.1007/S10059-013-2347-0  0.96
2013 Lee KT, Chung WH, Lee SY, Choi JW, Kim J, Lim D, Lee S, Jang GW, Kim B, Choy YH, Liao X, Stothard P, Moore SS, Lee SH, Ahn S, et al. Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. Bmc Genomics. 14: 519. PMID 23899338 DOI: 10.1186/1471-2164-14-519  0.96
2013 Karisa BK, Thomson J, Wang Z, Stothard P, Moore SS, Plastow GS. Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle. Journal of Animal Science. 91: 3502-13. PMID 23736061 DOI: 10.2527/Jas.2012-6170  0.96
2013 Choi JW, Lee KT, Liao X, Stothard P, An HS, Ahn S, Lee S, Lee SY, Moore SS, Kim TH. Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 151-63. PMID 23543395 DOI: 10.1007/S00335-013-9449-Z  0.96
2012 Thomson JM, Bowles V, Choi JW, Basu U, Meng Y, Stothard P, Moore S. The identification of candidate genes and SNP markers for classical bovine spongiform encephalopathy susceptibility. Prion. 6: 461-9. PMID 22918267 DOI: 10.4161/Pri.21866  0.96
2012 Wang Y, Cai Z, Stothard P, Moore S, Goebel R, Wang L, Lin G. Fast accurate missing SNP genotype local imputation. Bmc Research Notes. 5: 404. PMID 22863359 DOI: 10.1186/1756-0500-5-404  0.96
2012 Lynch KH, Stothard P, Dennis JJ. Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages. Bmc Genomics. 13: 223. PMID 22676492 DOI: 10.1186/1471-2164-13-223  0.96
2012 Grant JR, Arantes AS, Stothard P. Comparing thousands of circular genomes using the CGView Comparison Tool. Bmc Genomics. 13: 202. PMID 22621371 DOI: 10.1186/1471-2164-13-202  0.96
2012 Nalaila SM, Stothard P, Moore SS, Li C, Wang Z. Whole-genome QTL scan for ultrasound and carcass merit traits in beef cattle using Bayesian shrinkage method. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 129: 107-19. PMID 22394233 DOI: 10.1111/J.1439-0388.2011.00954.X  0.96
2012 Canavez FC, Luche DD, Stothard P, Leite KR, Sousa-Canavez JM, Plastow G, Meidanis J, Souza MA, Feijao P, Moore SS, Camara-Lopes LH. Genome sequence and assembly of Bos indicus. The Journal of Heredity. 103: 342-8. PMID 22315242 DOI: 10.1093/Jhered/Esr153  0.96
2012 Lynch KH, Stothard P, Dennis JJ. Characterization of DC1, a broad-host-range Bcep22-like podovirus. Applied and Environmental Microbiology. 78: 889-91. PMID 22139000 DOI: 10.1128/Aem.07097-11  0.96
2012 Cruz J, Liu Y, Liang Y, Zhou Y, Wilson M, Dennis JJ, Stothard P, Van Domselaar G, Wishart DS. BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Research. 40: D599-604. PMID 22135301 DOI: 10.1093/Nar/Gkr1105  0.96
2011 Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS. Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery. Bmc Genomics. 12: 559. PMID 22085807 DOI: 10.1186/1471-2164-12-559  0.96
2011 Marques E, Grant JR, Wang Z, Kolbehdari D, Stothard P, Plastow G, Moore SS. Identification of candidate markers on bovine chromosome 14 (BTA14) under milk production trait quantitative trait loci in Holstein. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 128: 305-13. PMID 21749477 DOI: 10.1111/J.1439-0388.2010.00910.X  0.96
2011 Grant JR, Arantes AS, Liao X, Stothard P. In-depth annotation of SNPs arising from resequencing projects using NGS-SNP. Bioinformatics (Oxford, England). 27: 2300-1. PMID 21697123 DOI: 10.1093/Bioinformatics/Btr372  0.96
2011 Mujibi FD, Nkrumah JD, Durunna ON, Stothard P, Mah J, Wang Z, Basarab J, Plastow G, Crews DH, Moore SS. Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle. Journal of Animal Science. 89: 3353-61. PMID 21642493 DOI: 10.2527/Jas.2010-3361  0.96
2011 Nalaila SM, Stothard P, Moore SS, Wang Z, Li C. Whole genome fine mapping of quantitative trait loci for ultrasound and carcass merit traits in beef cattle Canadian Journal of Animal Science. 91: 61-73. DOI: 10.4141/Cjas10007  0.96
2010 Lynch KH, Stothard P, Dennis JJ. Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex. Bmc Genomics. 11: 599. PMID 20973964 DOI: 10.1186/1471-2164-11-599  0.96
2010 Petkau A, Stuart-Edwards M, Stothard P, Van Domselaar G. Interactive microbial genome visualization with GView. Bioinformatics (Oxford, England). 26: 3125-6. PMID 20956244 DOI: 10.1093/Bioinformatics/Btq588  0.96
2010 Hernandez-Sanabria E, Guan LL, Goonewardene LA, Li M, Mujibi DF, Stothard P, Moore SS, Leon-Quintero MC. Correlation of particular bacterial PCR-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Applied and Environmental Microbiology. 76: 6338-50. PMID 20709849 DOI: 10.1128/Aem.01052-10  0.96
2010 Lu YK, Marden J, Han M, Swingley WD, Mastrian SD, Chowdhury SR, Hao J, Helmy T, Kim S, Kurdoglu AA, Matthies HJ, Rollo D, Stothard P, Blankenship RE, Bauer CE, et al. Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. Bmc Genomics. 11: 325. PMID 20500872 DOI: 10.1186/1471-2164-11-325  0.96
2010 Berjanskii M, Liang Y, Zhou J, Tang P, Stothard P, Zhou Y, Cruz J, MacDonell C, Lin G, Lu P, Wishart DS. PROSESS: a protein structure evaluation suite and server. Nucleic Acids Research. 38: W633-40. PMID 20460469 DOI: 10.1093/Nar/Gkq375  0.96
2010 Murdoch BM, Clawson ML, Laegreid WW, Stothard P, Settles M, McKay S, Prasad A, Wang Z, Moore SS, Williams JL. A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. Bmc Genetics. 11: 20. PMID 20350325 DOI: 10.1186/1471-2156-11-20  0.96
2010 Lynch KH, Seed KD, Stothard P, Dennis JJ. Inactivation of Burkholderia cepacia complex phage KS9 gp41 identifies the phage repressor and generates lytic virions. Journal of Virology. 84: 1276-88. PMID 19939932 DOI: 10.1128/Jvi.01843-09  0.96
2009 Jin W, Grant JR, Stothard P, Moore SS, Guan LL. Characterization of bovine miRNAs by sequencing and bioinformatics analysis. Bmc Molecular Biology. 10: 90. PMID 19758457 DOI: 10.1186/1471-2199-10-90  0.96
2009 Kolbehdari D, Wang Z, Grant JR, Murdoch B, Prasad A, Xiu Z, Marques E, Stothard P, Moore SS. A whole genome scan to map QTL for milk production traits and somatic cell score in Canadian Holstein bulls. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 126: 216-27. PMID 19646150 DOI: 10.1111/J.1439-0388.2008.00793.X  0.96
2009 Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Stothard P, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588  0.4
2009 Cai Z, Sabaa H, Wang Y, Goebel R, Wang Z, Xu J, Stothard P, Lin G. Most parsimonious haplotype allele sharing determination. Bmc Bioinformatics. 10: 115. PMID 19379528 DOI: 10.1186/1471-2105-10-115  0.96
2009 Kropinski AM, Borodovsky M, Carver TJ, Cerdeño-Tárraga AM, Darling A, Lomsadze A, Mahadevan P, Stothard P, Seto D, Van Domselaar G, Wishart DS. In silico identification of genes in bacteriophage DNA. Methods in Molecular Biology (Clifton, N.J.). 502: 57-89. PMID 19082552 DOI: 10.1007/978-1-60327-565-1_6  0.96
2008 Amaral ME, Grant JR, Riggs PK, Stafuzza NB, Filho EA, Goldammer T, Weikard R, Brunner RM, Kochan KJ, Greco AJ, Jeong J, Cai Z, Lin G, Prasad A, Kumar S, ... ... Stothard P, et al. A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. Bmc Genomics. 9: 631. PMID 19108729 DOI: 10.1186/1471-2164-9-631  0.96
2008 Goudie AD, Lynch KH, Seed KD, Stothard P, Shrivastava S, Wishart DS, Dennis JJ. Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex. Bmc Genomics. 9: 615. PMID 19094239 DOI: 10.1186/1471-2164-9-615  0.96
2008 Mattes TE, Alexander AK, Richardson PM, Munk AC, Han CS, Stothard P, Coleman NV. The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Applied and Environmental Microbiology. 74: 6405-16. PMID 18723656 DOI: 10.1128/Aem.00197-08  0.96
2008 Prasad A, Schnabel RD, McKay SD, Murdoch B, Stothard P, Kolbehdari D, Wang Z, Taylor JF, Moore SS. Linkage disequilibrium and signatures of selection on chromosomes 19 and 29 in beef and dairy cattle. Animal Genetics. 39: 597-605. PMID 18717667 DOI: 10.1111/J.1365-2052.2008.01772.X  0.96
2008 Marques E, Schnabel RD, Stothard P, Kolbehdari D, Wang Z, Taylor JF, Moore SS. High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle. Bmc Genetics. 9: 45. PMID 18611270 DOI: 10.1186/1471-2156-9-45  0.96
2008 Kolbehdari D, Wang Z, Grant JR, Murdoch B, Prasad A, Xiu Z, Marques E, Stothard P, Moore SS. A whole-genome scan to map quantitative trait loci for conformation and functional traits in Canadian Holstein bulls. Journal of Dairy Science. 91: 2844-56. PMID 18565942 DOI: 10.3168/Jds.2007-0585  0.96
2008 Cheng D, Knox C, Young N, Stothard P, Damaraju S, Wishart DS. PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Research. 36: W399-405. PMID 18487273 DOI: 10.1093/Nar/Gkn296  0.96
2008 Grant JR, Stothard P. The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Research. 36: W181-4. PMID 18411202 DOI: 10.1093/Nar/Gkn179  0.96
2007 Knox C, Shrivastava S, Stothard P, Eisner R, Wishart DS. BioSpider: a web server for automating metabolome annotations. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 145-56. PMID 17990488  0.96
2007 McKay SD, Schnabel RD, Murdoch BM, Matukumalli LK, Aerts J, Coppieters W, Crews D, Dias Neto E, Gill CA, Gao C, Mannen H, Stothard P, Wang Z, Van Tassell CP, Williams JL, et al. Whole genome linkage disequilibrium maps in cattle. Bmc Genetics. 8: 74. PMID 17961247 DOI: 10.1186/1471-2156-8-74  0.96
2007 Prasad A, Schiex T, McKay S, Murdoch B, Wang Z, Womack JE, Stothard P, Moore SS. High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. Bmc Genomics. 8: 310. PMID 17784962 DOI: 10.1186/1471-2164-8-310  0.96
2007 Marques E, de Givry S, Stothard P, Murdoch B, Wang Z, Womack J, Moore SS. A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. Bmc Genomics. 8: 254. PMID 17655763 DOI: 10.1186/1471-2164-8-254  0.96
2007 McKay SD, Schnabel RD, Murdoch BM, Aerts J, Gill CA, Gao C, Li C, Matukumalli LK, Stothard P, Wang Z, Van Tassell CP, Williams JL, Taylor JF, Moore SS. Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping. Animal Genetics. 38: 120-5. PMID 17302794 DOI: 10.1111/J.1365-2052.2006.01564.X  0.96
2007 Wishart DS, Tzur D, Knox C, Eisner R, Guo AC, Young N, Cheng D, Jewell K, Arndt D, Sawhney S, Fung C, Nikolai L, Lewis M, Coutouly MA, Forsythe I, ... ... Stothard P, et al. HMDB: the Human Metabolome Database. Nucleic Acids Research. 35: D521-6. PMID 17202168 DOI: 10.1093/Nar/Gkl923  0.96
2006 Stothard P, Wishart DS. Automated bacterial genome analysis and annotation. Current Opinion in Microbiology. 9: 505-10. PMID 16931121 DOI: 10.1016/J.Mib.2006.08.002  0.96
2006 Stothard P, Pilgrim D. Conspecific and interspecific interactions between the FEM-2 and the FEM-3 sex-determining proteins despite rapid sequence divergence. Journal of Molecular Evolution. 62: 281-91. PMID 16477523 DOI: 10.1007/S00239-005-0084-5  0.96
2006 Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J. DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Research. 34: D668-72. PMID 16381955 DOI: 10.1093/Nar/Gkj067  0.96
2005 Amegbey G, Stothard P, Kuznetsova E, Yee A, Arrowsmith CH, Wishart DS. Solution Structure of MTH0776 from Methanobacterium thermoautotrophicum. Journal of Biomolecular Nmr. 33: 51-6. PMID 16222557 DOI: 10.1007/S10858-005-1275-5  0.96
2005 Van Domselaar GH, Stothard P, Shrivastava S, Cruz JA, Guo A, Dong X, Lu P, Szafron D, Greiner R, Wishart DS. BASys: a web server for automated bacterial genome annotation. Nucleic Acids Research. 33: W455-9. PMID 15980511 DOI: 10.1093/Nar/Gki593  0.96
2005 Vallée M, Gravel C, Palin MF, Reghenas H, Stothard P, Wishart DS, Sirard MA. Identification of novel and known oocyte-specific genes using complementary DNA subtraction and microarray analysis in three different species. Biology of Reproduction. 73: 63-71. PMID 15744023 DOI: 10.1095/Biolreprod.104.037069  0.96
2005 Stothard P, Van Domselaar G, Shrivastava S, Guo A, O'Neill B, Cruz J, Ellison M, Wishart DS. BacMap: an interactive picture atlas of annotated bacterial genomes. Nucleic Acids Research. 33: D317-20. PMID 15608206 DOI: 10.1093/Nar/Gki075  0.96
2005 Stothard P, Wishart DS. Circular genome visualization and exploration using CGView. Bioinformatics (Oxford, England). 21: 537-9. PMID 15479716 DOI: 10.1093/Bioinformatics/Bti054  0.96
2004 Amegbey G, Chang Z, Stothard P, Yee A, Arrowsmith C, Wishart DS. Complete 1H, 13C and 15N NMR assignments of MTH0776 from Methanobacterium thermoautotrophicum. Journal of Biomolecular Nmr. 30: 459-60. PMID 15630567 DOI: 10.1007/S10858-004-4341-5  0.96
2004 Dong X, Stothard P, Forsythe IJ, Wishart DS. PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Research. 32: W660-4. PMID 15215471 DOI: 10.1093/Nar/Gkh410  0.96
2004 Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M, Wishart DS. The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Research. 32: D293-5. PMID 14681416 DOI: 10.1093/Nar/Gkh108  0.96
2003 Stothard P, Pilgrim D. Sex-determination gene and pathway evolution in nematodes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 221-31. PMID 12596226 DOI: 10.1002/Bies.10239  0.96
2002 Stothard P, Hansen D, Pilgrim D. Evolution of the PP2C family in Caenorhabditis: rapid divergence of the sex-determining protein FEM-2. Journal of Molecular Evolution. 54: 267-82. PMID 11821919 DOI: 10.1007/S0023901-0008-Y  0.96
2001 Kibenge FS, Kibenge MJ, McKenna PK, Stothard P, Marshall R, Cusack RR, McGeachy S. Antigenic variation among isolates of infectious salmon anaemia virus correlates with genetic variation of the viral haemagglutinin gene. The Journal of General Virology. 82: 2869-79. PMID 11714961 DOI: 10.1099/0022-1317-82-12-2869  0.96
2001 Stothard PM. COMBOSA3D: combining sequence alignments with three-dimensional structures. Bioinformatics (Oxford, England). 17: 198-9. PMID 11238080  0.96
2000 Stothard P. The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques. 28: 1102, 1104. PMID 10868275 DOI: 10.2144/00286Ir01  0.96
2000 Wishart DS, Stothard P, Van Domselaar GH. PepTool and GeneTool: platform-independent tools for biological sequence analysis. Methods in Molecular Biology (Clifton, N.J.). 132: 93-113. PMID 10547833 DOI: 10.1385/1-59259-192-2:93  0.96
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