Amos Bairoch - Publications

Affiliations: 
1984- University of Geneva, Switzerland 
 1988-2009 Swiss-Prot group Swiss Institute of Bioinformatics 
 2009- CALIPHO group Swiss Institute of Bioinformatics 

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Robin T, Bairoch A, Müller M, Lisacek F, Lane L. Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project". Journal of Proteome Research. PMID 30802063 DOI: 10.1021/acs.jproteome.9b00113  0.48
2018 Duek P, Gateau A, Bairoch A, Lane L. Exploring the uncharacterized human proteome using neXtProt. Journal of Proteome Research. PMID 30191714 DOI: 10.1021/acs.jproteome.8b00537  0.48
2018 Robin T, Bairoch A, Müller M, Lisacek F, Lane L. Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project. Journal of Proteome Research. PMID 30175587 DOI: 10.1021/acs.jproteome.8b00392  0.48
2016 Gaudet P, Michel PA, Zahn-Zabal M, Britan A, Cusin I, Domagalski M, Duek PD, Gateau A, Gleizes A, Hinard V, de Laval VR, Lin J, Nikitin F, Schaeffer M, Teixeira D, ... ... Bairoch A, et al. The neXtProt knowledgebase on human proteins: 2017 update. Nucleic Acids Research. PMID 27899619 DOI: 10.1093/nar/gkw1062  0.48
2016 Duek P, Bairoch A, Gateau A, Vandenbrouck Y, Lane L. The missing protein landscape of human chromosomes 2 and 14: progress and current status. Journal of Proteome Research. PMID 27487287 DOI: 10.1021/acs.jproteome.6b00443  0.48
2015 Babbitt PC, Bagos PG, Bairoch A, Bateman A, Chatonnet A, Chen MJ, Craik DJ, Finn RD, Gloriam D, Haft DH, Henrissat B, Holliday GL, Isberg V, Kaas Q, Landsman D, et al. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database : the Journal of Biological Databases and Curation. 2015: bav063. PMID 26284514 DOI: 10.1093/database/bav063  0.48
2015 Vaca Jacome AS, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A, Carapito C. N-terminome analysis of the human mitochondrial proteome. Proteomics. PMID 25944712 DOI: 10.1002/pmic.201400617  0.48
2015 Holliday GL, Bairoch A, Bagos PG, Chatonnet A, Craik DJ, Finn RD, Henrissat B, Landsman D, Manning G, Nagano N, O'Donovan C, Pruitt KD, Rawlings ND, Saier M, Sowdhamini R, et al. Key challenges for the creation and maintenance of specialist protein resources. Proteins. 83: 1005-13. PMID 25820941 DOI: 10.1002/prot.24803  0.48
2015 Desmurs M, Foti M, Raemy E, Vaz FM, Martinou JC, Bairoch A, Lane L. C11orf83, a mitochondrial cardiolipin-binding protein involved in bc1 complex assembly and supercomplex stabilization. Molecular and Cellular Biology. 35: 1139-56. PMID 25605331 DOI: 10.1128/MCB.01047-14  0.48
2015 Gaudet P, Michel PA, Zahn-Zabal M, Cusin I, Duek PD, Evalet O, Gateau A, Gleizes A, Pereira M, Teixeira D, Zhang Y, Lane L, Bairoch A. The neXtProt knowledgebase on human proteins: current status. Nucleic Acids Research. 43: D764-70. PMID 25593349 DOI: 10.1093/nar/gku1178  0.48
2014 Salleron L, Magistrelli G, Mary C, Fischer N, Bairoch A, Lane L. DERA is the human deoxyribose phosphate aldolase and is involved in stress response. Biochimica Et Biophysica Acta. 1843: 2913-25. PMID 25229427 DOI: 10.1016/j.bbamcr.2014.09.007  0.48
2014 Stockinger H, Altenhoff AM, Arnold K, Bairoch A, Bastian F, Bergmann S, Bougueleret L, Bucher P, Delorenzi M, Lane L, Le Mercier P, Lisacek F, Michielin O, Palagi PM, Rougemont J, et al. Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Research. 42: W436-41. PMID 24792157 DOI: 10.1093/nar/gku380  0.48
2014 Bontems F, Fish RJ, Borlat I, Lembo F, Chocu S, Chalmel F, Borg JP, Pineau C, Neerman-Arbez M, Bairoch A, Lane L. C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human. Plos One. 9: e86476. PMID 24475127 DOI: 10.1371/journal.pone.0086476  0.48
2014 Lane L, Bairoch A, Beavis RC, Deutsch EW, Gaudet P, Lundberg E, Omenn GS. Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins. Journal of Proteome Research. 13: 15-20. PMID 24364385 DOI: 10.1021/pr401144x  0.48
2013 Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, et al. A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17. Journal of Proteome Research. 12: 45-57. PMID 23259914 DOI: 10.1021/pr300985j  0.48
2013 Gaudet P, Argoud-Puy G, Cusin I, Duek P, Evalet O, Gateau A, Gleizes A, Pereira M, Zahn-Zabal M, Zwahlen C, Bairoch A, Lane L. neXtProt: organizing protein knowledge in the context of human proteome projects. Journal of Proteome Research. 12: 293-8. PMID 23205526 DOI: 10.1021/pr300830v  0.48
2012 Mary C, Duek P, Salleron L, Tienz P, Bumann D, Bairoch A, Lane L. Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway. Plos One. 7: e52877. PMID 23285211 DOI: 10.1371/journal.pone.0052877  0.48
2012 Paik YK, Omenn GS, Uhlen M, Hanash S, Marko-Varga G, Aebersold R, Bairoch A, Yamamoto T, Legrain P, Lee HJ, Na K, Jeong SK, He F, Binz PA, Nishimura T, et al. Standard guidelines for the chromosome-centric human proteome project. Journal of Proteome Research. 11: 2005-13. PMID 22443261 DOI: 10.1021/pr200824a  0.48
2012 Paik YK, Jeong SK, Omenn GS, Uhlen M, Hanash S, Cho SY, Lee HJ, Na K, Choi EY, Yan F, Zhang F, Zhang Y, Snyder M, Cheng Y, Chen R, ... ... Bairoch A, et al. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nature Biotechnology. 30: 221-3. PMID 22398612 DOI: 10.1038/nbt.2152  0.48
2012 Lane L, Argoud-Puy G, Britan A, Cusin I, Duek PD, Evalet O, Gateau A, Gaudet P, Gleizes A, Masselot A, Zwahlen C, Bairoch A. neXtProt: a knowledge platform for human proteins. Nucleic Acids Research. 40: D76-83. PMID 22139911 DOI: 10.1093/nar/gkr1179  0.48
2012 Morgat A, Coissac E, Coudert E, Axelsen KB, Keller G, Bairoch A, Bridge A, Bougueleret L, Xenarios I, Viari A. UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Research. 40: D761-9. PMID 22102589 DOI: 10.1093/nar/gkr1023  0.48
2011 Legrain P, Aebersold R, Archakov A, Bairoch A, Bala K, Beretta L, Bergeron J, Borchers CH, Corthals GL, Costello CE, Deutsch EW, Domon B, Hancock W, He F, Hochstrasser D, et al. The human proteome project: current state and future direction. Molecular & Cellular Proteomics : McP. 10: M111.009993. PMID 21742803 DOI: 10.1074/mcp.M111.009993  0.48
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Database : the Journal of Biological Databases and Curation. 2011: baq027. PMID 21205783 DOI: 10.1093/database/baq027  0.48
2011 Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research. 39: D7-10. PMID 21097465 DOI: 10.1093/nar/gkq1173  0.48
2011 Hulo C, de Castro E, Masson P, Bougueleret L, Bairoch A, Xenarios I, Le Mercier P. ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Research. 39: D576-82. PMID 20947564 DOI: 10.1093/nar/gkq901  0.48
2010 Jungo F, Estreicher A, Bairoch A, Bougueleret L, Xenarios I. Animal Toxins: How is Complexity Represented in Databases? Toxins. 2: 262-82. PMID 22069583 DOI: 10.3390/toxins2020262  0.48
2010 Nilsson T, Mann M, Aebersold R, Yates JR, Bairoch A, Bergeron JJ. Mass spectrometry in high-throughput proteomics: ready for the big time. Nature Methods. 7: 681-5. PMID 20805795 DOI: 10.1038/nmeth0910-681  0.48
2010 Liechti R, Gleizes A, Kuznetsov D, Bougueleret L, Le Mercier P, Bairoch A, Xenarios I. OpenFluDB, a database for human and animal influenza virus. Database : the Journal of Biological Databases and Curation. 2010: baq004. PMID 20624713 DOI: 10.1093/database/baq004  0.48
2010 Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N. PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Research. 38: D161-6. PMID 19858104 DOI: 10.1093/nar/gkp885  0.48
2009 Gaudet P, Lane L, Fey P, Bridge A, Poux S, Auchincloss A, Axelsen K, Braconi Quintaje S, Boutet E, Brown P, Coudert E, Datta RS, de Lima WC, de Oliveira Lima T, Duvaud S, ... ... Bairoch A, et al. Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase. Database : the Journal of Biological Databases and Curation. 2009: bap016. PMID 20157489 DOI: 10.1093/database/bap016  0.48
2009 Black WJ, Stagos D, Marchitti SA, Nebert DW, Tipton KF, Bairoch A, Vasiliou V. Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature. Pharmacogenetics and Genomics. 19: 893-902. PMID 19823103 DOI: 10.1097/FPC.0b013e3283329023  0.48
2009 Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, Suzek BE, Martin MJ, McGarvey P, Gasteiger E. Infrastructure for the life sciences: design and implementation of the UniProt website. Bmc Bioinformatics. 10: 136. PMID 19426475 DOI: 10.1186/1471-2105-10-136  0.48
2009 Orchard S, Hoogland C, Bairoch A, Eisenacher M, Kraus HJ, Binz PA. Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands. Proteomics. 9: 499-501. PMID 19132688 DOI: 10.1002/pmic.200800838  0.48
2009 Schneider M, Lane L, Boutet E, Lieberherr D, Tognolli M, Bougueleret L, Bairoch A. The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program. Journal of Proteomics. 72: 567-73. PMID 19084081 DOI: 10.1016/j.jprot.2008.11.010  0.48
2009 Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, et al. InterPro: the integrative protein signature database. Nucleic Acids Research. 37: D211-5. PMID 18940856 DOI: 10.1093/nar/gkn785  0.48
2009 Lima T, Auchincloss AH, Coudert E, Keller G, Michoud K, Rivoire C, Bulliard V, de Castro E, Lachaize C, Baratin D, Phan I, Bougueleret L, Bairoch A. HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Research. 37: D471-8. PMID 18849571 DOI: 10.1093/nar/gkn661  0.48
2009 Almeida LG, Sakabe NJ, deOliveira AR, Silva MC, Mundstein AS, Cohen T, Chen YT, Chua R, Gurung S, Gnjatic S, Jungbluth AA, Caballero OL, Bairoch A, Kiesler E, White SL, et al. CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Research. 37: D816-9. PMID 18838390 DOI: 10.1093/nar/gkn673  0.48
2008 Bairoch A, Cohen-Boulakia S, Froidevaux C. Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008. Bmc Bioinformatics. 9: S1. PMID 18673525 DOI: 10.1186/1471-2105-9-S8-S1  0.48
2008 Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, ... ... Bairoch A, et al. Calling on a million minds for community annotation in WikiProteins. Genome Biology. 9: R89. PMID 18507872 DOI: 10.1186/gb-2008-9-5-r89  0.48
2008 Yip YL, Famiglietti M, Gos A, Duek PD, David FP, Gateau A, Bairoch A. Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase. Human Mutation. 29: 361-6. PMID 18175334 DOI: 10.1002/humu.20671  0.48
2008 Hulo N, Bairoch A, Bulliard V, Cerutti L, Cuche BA, de Castro E, Lachaize C, Langendijk-Genevaux PS, Sigrist CJ. The 20 years of PROSITE. Nucleic Acids Research. 36: D245-9. PMID 18003654 DOI: 10.1093/nar/gkm977  0.48
2007 Boutet E, Lieberherr D, Tognolli M, Schneider M, Bairoch A. UniProtKB/Swiss-Prot. Methods in Molecular Biology (Clifton, N.J.). 406: 89-112. PMID 18287689  0.48
2007 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, et al. New developments in the InterPro database. Nucleic Acids Research. 35: D224-8. PMID 17202162 DOI: 10.1093/nar/gkl841  0.48
2006 de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N. ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Research. 34: W362-5. PMID 16845026 DOI: 10.1093/nar/gkl124  0.48
2006 Hulo N, Bairoch A, Bulliard V, Cerutti L, De Castro E, Langendijk-Genevaux PS, Pagni M, Sigrist CJ. The PROSITE database. Nucleic Acids Research. 34: D227-30. PMID 16381852 DOI: 10.1093/nar/gkj063  0.48
2006 Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Research. 34: D187-91. PMID 16381842 DOI: 10.1093/nar/gkj161  0.48
2005 Boeckmann B, Blatter MC, Famiglietti L, Hinz U, Lane L, Roechert B, Bairoch A. Protein variety and functional diversity: Swiss-Prot annotation in its biological context. Comptes Rendus Biologies. 328: 882-99. PMID 16286078 DOI: 10.1016/j.crvi.2005.06.001  0.48
2005 Sigrist CJ, De Castro E, Langendijk-Genevaux PS, Le Saux V, Bairoch A, Hulo N. ProRule: a new database containing functional and structural information on PROSITE profiles. Bioinformatics (Oxford, England). 21: 4060-6. PMID 16091411 DOI: 10.1093/bioinformatics/bti614  0.48
2005 Schneider M, Bairoch A, Wu CH, Apweiler R. Plant protein annotation in the UniProt Knowledgebase. Plant Physiology. 138: 59-66. PMID 15888679 DOI: 10.1104/pp.104.058933  0.48
2005 Jungo F, Bairoch A. Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase. Toxicon : Official Journal of the International Society On Toxinology. 45: 293-301. PMID 15683867 DOI: 10.1016/j.toxicon.2004.10.018  0.48
2005 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/nar/gki106  0.48
2005 Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. The Universal Protein Resource (UniProt). Nucleic Acids Research. 33: D154-9. PMID 15608167 DOI: 10.1093/nar/gki070  0.48
2004 Schneider M, Tognolli M, Bairoch A. The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools. Plant Physiology and Biochemistry : Ppb / SociéTé FrançAise De Physiologie VéGéTale. 42: 1013-21. PMID 15707838 DOI: 10.1016/j.plaphy.2004.10.009  0.48
2004 Nakamura K, Aebersold R, Bairoch A, Dunn M, Celis J, Hanash S, Hochstrasser D, Humphrey-Smith I, James P, Klose J, LaBaer J, Langen H, Mann M, Parekh R, Patterson S, et al. [From genome to proteome--aim of human proteomics]. Seikagaku. the Journal of Japanese Biochemical Society. 76: 1271-4. PMID 15580857  0.48
2004 Rose K, Bougueleret L, Baussant T, Böhm G, Botti P, Colinge J, Cusin I, Gaertner H, Gleizes A, Heller M, Jimenez S, Johnson A, Kussmann M, Menin L, Menzel C, ... ... Bairoch A, et al. Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins. Proteomics. 4: 2125-50. PMID 15221774 DOI: 10.1002/pmic.200300718  0.48
2004 Farriol-Mathis N, Garavelli JS, Boeckmann B, Duvaud S, Gasteiger E, Gateau A, Veuthey AL, Bairoch A. Annotation of post-translational modifications in the Swiss-Prot knowledge base. Proteomics. 4: 1537-50. PMID 15174124 DOI: 10.1002/pmic.200300764  0.48
2004 Appel RD, Bairoch A. Post-translational modifications: a challenge for proteomics and bioinformatics. Proteomics. 4: 1525-6. PMID 15174121 DOI: 10.1002/pmic.200490039  0.48
2004 Bairoch A, Boeckmann B, Ferro S, Gasteiger E. Swiss-Prot: juggling between evolution and stability. Briefings in Bioinformatics. 5: 39-55. PMID 15153305  0.48
2004 Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A. The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants. Human Mutation. 23: 464-70. PMID 15108278 DOI: 10.1002/humu.20021  0.48
2004 Apweiler R, Bairoch A, Wu CH. Protein sequence databases. Current Opinion in Chemical Biology. 8: 76-80. PMID 15036160 DOI: 10.1016/j.cbpa.2003.12.004  0.48
2004 Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, et al. IntAct: an open source molecular interaction database. Nucleic Acids Research. 32: D452-5. PMID 14681455 DOI: 10.1093/nar/gkh052  0.48
2004 Fleischmann A, Darsow M, Degtyarenko K, Fleischmann W, Boyce S, Axelsen KB, Bairoch A, Schomburg D, Tipton KF, Apweiler R. IntEnz, the integrated relational enzyme database. Nucleic Acids Research. 32: D434-7. PMID 14681451 DOI: 10.1093/nar/gkh119  0.48
2004 Hulo N, Sigrist CJ, Le Saux V, Langendijk-Genevaux PS, Bordoli L, Gattiker A, De Castro E, Bucher P, Bairoch A. Recent improvements to the PROSITE database. Nucleic Acids Research. 32: D134-7. PMID 14681377 DOI: 10.1093/nar/gkh044  0.48
2004 Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. UniProt: the Universal Protein knowledgebase. Nucleic Acids Research. 32: D115-9. PMID 14681372 DOI: 10.1093/nar/gkh131  0.48
2003 Phan IQ, Pilbout SF, Fleischmann W, Bairoch A. NEWT, a new taxonomy portal. Nucleic Acids Research. 31: 3822-3. PMID 12824428 DOI: 10.1093/nar/gkg516  0.48
2003 Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A. ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research. 31: 3784-8. PMID 12824418 DOI: 10.1093/nar/gkg563  0.48
2003 Gattiker A, Michoud K, Rivoire C, Auchincloss AH, Coudert E, Lima T, Kersey P, Pagni M, Sigrist CJ, Lachaize C, Veuthey AL, Gasteiger E, Bairoch A. Automated annotation of microbial proteomes in SWISS-PROT. Computational Biology and Chemistry. 27: 49-58. PMID 12798039 DOI: 10.1016/S1476-9271(02)00094-4  0.48
2003 Peeters H, Debeer P, Bairoch A, Wilquet V, Huysmans C, Parthoens E, Fryns JP, Gewillig M, Nakamura Y, Niikawa N, Van de Ven W, Devriendt K. PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse. Human Genetics. 112: 573-80. PMID 12607115 DOI: 10.1007/s00439-003-0917-5  0.48
2003 Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Research. 31: 365-70. PMID 12520024 DOI: 10.1093/nar/gkg095  0.48
2003 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/nar/gkg046  0.48
2002 Gattiker A, Gasteiger E, Bairoch A. ScanProsite: a reference implementation of a PROSITE scanning tool. Applied Bioinformatics. 1: 107-8. PMID 15130850  0.48
2002 Gattiker A, Bienvenut WV, Bairoch A, Gasteiger E. FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification. Proteomics. 2: 1435-44. PMID 12422360 DOI: 10.1002/1615-9861(200210)2:10<1435::AID-PROT1435>3.0.CO;2-9  0.48
2002 Appel RD, Bairoch A. The application of bioinformatics to mass spectrometry. Proteomics. 2: 1363-4. PMID 12422353 DOI: 10.1002/1615-9861(200210)2:10<1363::AID-PROT1363>3.0.CO;2-L  0.48
2002 O'Donovan C, Martin MJ, Gattiker A, Gasteiger E, Bairoch A, Apweiler R. High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Briefings in Bioinformatics. 3: 275-84. PMID 12230036  0.48
2002 Sigrist CJ, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P. PROSITE: a documented database using patterns and profiles as motif descriptors. Briefings in Bioinformatics. 3: 265-74. PMID 12230035  0.48
2002 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031  0.48
2002 Monigatti F, Gasteiger E, Bairoch A, Jung E. The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinformatics (Oxford, England). 18: 769-70. PMID 12050077  0.48
2002 Falquet L, Pagni M, Bucher P, Hulo N, Sigrist CJ, Hofmann K, Bairoch A. The PROSITE database, its status in 2002. Nucleic Acids Research. 30: 235-8. PMID 11752303  0.48
2001 Jung E, Veuthey AL, Gasteiger E, Bairoch A. Annotation of glycoproteins in the SWISS-PROT database. Proteomics. 1: 262-8. PMID 11680872 DOI: 10.1002/1615-9861(200102)1:2<262::AID-PROT262>3.0.CO;2-#  0.48
2001 Gasteiger E, Jung E, Bairoch A. SWISS-PROT: connecting biomolecular knowledge via a protein database. Current Issues in Molecular Biology. 3: 47-55. PMID 11488411  0.48
2001 O'Donovan C, Apweiler R, Bairoch A. The human proteomics initiative (HPI). Trends in Biotechnology. 19: 178-81. PMID 11301130 DOI: 10.1016/S0167-7799(01)01598-0  0.48
2001 Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research. 29: 37-40. PMID 11125043  0.48
2000 Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, et al. InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (Oxford, England). 16: 1145-50. PMID 11159333  0.48
2000 Bairoch A. Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times! Bioinformatics (Oxford, England). 16: 48-64. PMID 10812477  0.48
2000 Linder P, Gasteiger E, Bairoch A. A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae. Yeast (Chichester, England). 16: 507-9. PMID 10790687 DOI: 10.1002/(SICI)1097-0061(200004)16:6<507::AID-YEA549>3.0.CO;2-N  0.48
2000 Bairoch A. The ENZYME database in 2000. Nucleic Acids Research. 28: 304-5. PMID 10592255  0.48
2000 Hoogland C, Sanchez JC, Tonella L, Binz PA, Bairoch A, Hochstrasser DF, Appel RD. The 1999 SWISS-2DPAGE database update. Nucleic Acids Research. 28: 286-8. PMID 10592248  0.48
2000 Bairoch A, Apweiler R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Research. 28: 45-8. PMID 10592178  0.48
1999 Vasiliou V, Bairoch A, Tipton KF, Nebert DW. Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping. Pharmacogenetics. 9: 421-34. PMID 10780262  0.48
1999 Junker VL, Apweiler R, Bairoch A. Representation of functional information in the SWISS-PROT data bank. Bioinformatics (Oxford, England). 15: 1066-7. PMID 10746001  0.48
1999 Gras R, Müller M, Gasteiger E, Gay S, Binz PA, Bienvenut W, Hoogland C, Sanchez JC, Bairoch A, Hochstrasser DF, Appel RD. Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection. Electrophoresis. 20: 3535-50. PMID 10612280 DOI: 10.1002/(SICI)1522-2683(19991201)20:18<3535::AID-ELPS3535>3.0.CO;2-J  0.48
1999 Chen H, Rossier C, Morris MA, Scott HS, Gos A, Bairoch A, Antonarakis SE. A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y. Human Genetics. 105: 399-409. PMID 10598804 DOI: 10.1007/s004390051122  0.48
1999 Binz PA, Müller M, Walther D, Bienvenut WV, Gras R, Hoogland C, Bouchet G, Gasteiger E, Fabbretti R, Gay S, Palagi P, Wilkins MR, Rouge V, Tonella L, Paesano S, ... ... Bairoch A, et al. A molecular scanner to automate proteomic research and to display proteome images. Analytical Chemistry. 71: 4981-8. PMID 10565287 DOI: 10.1021/ac990449e  0.48
1999 Wilkins MR, Gasteiger E, Gooley AA, Herbert BR, Molloy MP, Binz PA, Ou K, Sanchez JC, Bairoch A, Williams KL, Hochstrasser DF. High-throughput mass spectrometric discovery of protein post-translational modifications. Journal of Molecular Biology. 289: 645-57. PMID 10356335 DOI: 10.1006/jmbi.1999.2794  0.48
1999 Wilkins MR, Gasteiger E, Bairoch A, Sanchez JC, Williams KL, Appel RD, Hochstrasser DF. Protein identification and analysis tools in the ExPASy server. Methods in Molecular Biology (Clifton, N.J.). 112: 531-52. PMID 10027275  0.48
1999 Appel RD, Hoogland C, Bairoch A, Hochstrasser DF. Constructing a 2-D database for the World Wide Web. Methods in Molecular Biology (Clifton, N.J.). 112: 411-6. PMID 10027265  0.48
1999 Appel RD, Bairoch A, Hochstrasser DF. 2-D databases on the World Wide Web. Methods in Molecular Biology (Clifton, N.J.). 112: 383-91. PMID 10027263  0.48
1999 Bairoch A. The ENZYME data bank in 1999. Nucleic Acids Research. 27: 310-1. PMID 9847212 DOI: 10.1093/nar/27.1.310  0.48
1999 Hoogland C, Sanchez JC, Tonella L, Bairoch A, Hochstrasser DF, Appel RD. The SWISS-2DPAGE database: what has changed during the last year. Nucleic Acids Research. 27: 289-91. PMID 9847204 DOI: 10.1093/nar/27.1.289  0.48
1999 Hofmann K, Bucher P, Falquet L, Bairoch A. The PROSITE database, its status in 1999. Nucleic Acids Research. 27: 215-9. PMID 9847184 DOI: 10.1093/nar/27.1.215  0.48
1998 Kasai H, Watanabe K, Gasteiger E, Bairoch A, Isono K, Yamamoto S, Harayama S. Construction of the gyrB Database for the Identification and Classification of Bacteria. Genome Informatics. Workshop On Genome Informatics. 9: 13-21. PMID 11072317  0.48
1998 Galperin MY, Bairoch A, Koonin EV. A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases. Protein Science : a Publication of the Protein Society. 7: 1829-35. PMID 10082381 DOI: 10.1002/pro.5560070819  0.48
1998 Wilkins MR, Gasteiger E, Wheeler CH, Lindskog I, Sanchez JC, Bairoch A, Appel RD, Dunn MJ, Hochstrasser DF. Multiple parameter cross-species protein identification using MultiIdent--a world-wide web accessible tool. Electrophoresis. 19: 3199-206. PMID 9932815 DOI: 10.1002/elps.1150191824  0.48
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