Kerby Shedden - Publications

Affiliations: 
Statistics University of Michigan, Ann Arbor, Ann Arbor, MI 

107 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 LaLone V, Fawaz MV, Morales-Mercado J, Mourão MA, Snyder CS, Kim SY, Lieberman AP, Tuteja A, Mehta G, Standiford TJ, Raghavendran K, Shedden K, Schwendeman A, Stringer KA, Rosania GR. Inkjet-printed micro-calibration standards for ultraquantitative Raman spectral cytometry. The Analyst. PMID 31116195 DOI: 10.1039/c9an00500e  0.68
2018 LaLone V, Mourão MA, Standiford TJ, Raghavendran K, Shedden K, Stringer KA, Rosania GR. An Expandable Mechanopharmaceutical Device (3): a Versatile Raman Spectral Cytometry Approach to Study the Drug Cargo Capacity of Individual Macrophages. Pharmaceutical Research. 36: 2. PMID 30402713 DOI: 10.1007/s11095-018-2540-0  0.68
2017 Huang SH, Huang ML, Shedden K, Wong WK. Optimal group testing designs for estimating prevalence with uncertain testing errors. Journal of the Royal Statistical Society. Series B, Statistical Methodology. 79: 1547-1563. PMID 29249898 DOI: 10.1111/rssb.12223  0.32
2016 Foxman B, Luo T, Srinivasan U, Ramadugu K, Wen A, Goldberg D, Shedden K, Crout R, McNeil DW, Weyant R, Marazita ML. The effects of family, dentition, and dental caries on the salivary microbiome. Annals of Epidemiology. PMID 27157862 DOI: 10.1016/j.annepidem.2016.03.006  0.68
2015 Ju W, Nair V, Smith S, Zhu L, Shedden K, Song PX, Mariani LH, Eichinger FH, Berthier CC, Randolph A, Lai JY, Zhou Y, Hawkins JJ, Bitzer M, Sampson MG, et al. Tissue transcriptome-driven identification of epidermal growth factor as a chronic kidney disease biomarker. Science Translational Medicine. 7: 316ra193. PMID 26631632 DOI: 10.1126/scitranslmed.aac7071  0.68
2015 Yin H, Tan Z, Wu J, Zhu J, Shedden KA, Marrero J, Lubman DM. Mass Selected Site-specific Core-fucosylation of Serum Proteins in Hepatocellular Carcinoma. Journal of Proteome Research. PMID 26403951 DOI: 10.1021/acs.jproteome.5b00718  0.68
2015 Volk ML, Goodrich N, Lai JC, Sonnenday C, Shedden K. Decision support for organ offers in liver transplantation. Liver Transplantation : Official Publication of the American Association For the Study of Liver Diseases and the International Liver Transplantation Society. 21: 784-91. PMID 25779757 DOI: 10.1002/lt.24113  0.68
2015 Li Y, Jong N, Caird MS, Tenfelde A, Nowicki P, Shedden K, Nelson VS, Farley FA. Vitamin D Deficiency in Children Undergoing Vertical Expandable Prosthetic Titanium Rib Treatment. Journal of Pediatric Orthopedics. PMID 25705803 DOI: 10.1097/BPO.0000000000000420  0.68
2015 Parkin B, Ouillette P, Yildiz M, Saiya-Cork K, Shedden K, Malek SN. Integrated genomic profiling, therapy response, and survival in adult acute myelogenous leukemia. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 21: 2045-56. PMID 25652455 DOI: 10.1158/1078-0432.CCR-14-0921  0.68
2015 Yildiz M, Li H, Bernard D, Amin NA, Ouillette P, Jones S, Saiya-Cork K, Parkin B, Jacobi K, Shedden K, Wang S, Chang AE, Kaminski MS, Malek SN. Activating STAT6 mutations in follicular lymphoma. Blood. 125: 668-79. PMID 25428220 DOI: 10.1182/blood-2014-06-582650  0.68
2015 Byrd AL, Wright AG, Sen S, Shedden K, Manuck SB. Reply to: the liptak-stouffer test for meta-analyses. Biological Psychiatry. 77: e3-4. PMID 24655597 DOI: 10.1016/j.biopsych.2014.02.009  0.68
2014 Hanauer DA, Saeed M, Zheng K, Mei Q, Shedden K, Aronson AR, Ramakrishnan N. Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis. Journal of the American Medical Informatics Association : Jamia. 21: 925-37. PMID 24928177 DOI: 10.1136/amiajnl-2014-002767  0.68
2014 Nie S, Lo A, Wu J, Zhu J, Tan Z, Simeone DM, Anderson MA, Shedden KA, Ruffin MT, Lubman DM. Glycoprotein biomarker panel for pancreatic cancer discovered by quantitative proteomics analysis. Journal of Proteome Research. 13: 1873-84. PMID 24571389 DOI: 10.1021/pr400967x  0.68
2014 Li H, Kaminski MS, Li Y, Yildiz M, Ouillette P, Jones S, Fox H, Jacobi K, Saiya-Cork K, Bixby D, Lebovic D, Roulston D, Shedden K, Sabel M, Marentette L, et al. Mutations in linker histone genes HIST1H1 B, C, D, and E; OCT2 (POU2F2); IRF8; and ARID1A underlying the pathogenesis of follicular lymphoma. Blood. 123: 1487-98. PMID 24435047 DOI: 10.1182/blood-2013-05-500264  0.68
2014 Ehrmann BJ, Anderson RM, Piatt GA, Funnell MM, Rashid H, Shedden K, Douyon L. Digital photography as an educational food logging tool in obese patients with type 2 diabetes: lessons learned from a randomized, crossover pilot trial. The Diabetes Educator. 40: 89-99. PMID 24168836 DOI: 10.1177/0145721713508826  0.68
2013 Rosania GR, Shedden K, Zheng N, Zhang X. Visualizing chemical structure-subcellular localization relationships using fluorescent small molecules as probes of cellular transport. Journal of Cheminformatics. 5: 44. PMID 24093553 DOI: 10.1186/1758-2946-5-44  0.68
2013 Ouillette P, Saiya-Cork K, Seymour E, Li C, Shedden K, Malek SN. Clonal evolution, genomic drivers, and effects of therapy in chronic lymphocytic leukemia. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 19: 2893-904. PMID 23620403 DOI: 10.1158/1078-0432.CCR-13-0138  0.68
2013 Ouillette PD, Shedden KA, Li C, Malek SN. Analysis of acquired genomic copy number aberrations and regions of loss of heterozygosity in acute myelogenous leukemia genomes using Affymetrix SNP 6.0 arrays and supporting software tools. Methods in Molecular Biology (Clifton, N.J.). 973: 99-119. PMID 23412786 DOI: 10.1007/978-1-62703-281-0_7  0.68
2013 Parkin B, Ouillette P, Li Y, Keller J, Lam C, Roulston D, Li C, Shedden K, Malek SN. Clonal evolution and devolution after chemotherapy in adult acute myelogenous leukemia. Blood. 121: 369-77. PMID 23175688 DOI: 10.1182/blood-2012-04-427039  0.68
2013 Shedden K. Comment Journal of the American Statistical Association. 108: 1162-1163. DOI: 10.1080/01621459.2013.836970  0.68
2012 Sarntivijai S, Xiang Z, Shedden KA, Markel H, Omenn GS, Athey BD, He Y. Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines. Plos One. 7: e49941. PMID 23209624 DOI: 10.1371/journal.pone.0049941  0.68
2012 Ouillette P, Li J, Shaknovich R, Li Y, Melnick A, Shedden K, Malek SN. Incidence and clinical implications of ATM aberrations in chronic lymphocytic leukemia. Genes, Chromosomes & Cancer. 51: 1125-32. PMID 22952040 DOI: 10.1002/gcc.21997  0.68
2012 Stenmark MH, Cai XW, Shedden K, Hayman JA, Yuan S, Ritter T, Ten Haken RK, Lawrence TS, Kong FM. Combining physical and biologic parameters to predict radiation-induced lung toxicity in patients with non-small-cell lung cancer treated with definitive radiation therapy. International Journal of Radiation Oncology, Biology, Physics. 84: e217-22. PMID 22935395 DOI: 10.1016/j.ijrobp.2012.03.067  0.68
2012 Fukuda A, Wickman LT, Venkatareddy MP, Wang SQ, Chowdhury MA, Wiggins JE, Shedden KA, Wiggins RC. Urine podocin:nephrin mRNA ratio (PNR) as a podocyte stress biomarker. Nephrology, Dialysis, Transplantation : Official Publication of the European Dialysis and Transplant Association - European Renal Association. 27: 4079-87. PMID 22863839 DOI: 10.1093/ndt/gfs313  0.68
2012 Fukuda A, Chowdhury MA, Venkatareddy MP, Wang SQ, Nishizono R, Suzuki T, Wickman LT, Wiggins JE, Muchayi T, Fingar D, Shedden KA, Inoki K, Wiggins RC. Growth-dependent podocyte failure causes glomerulosclerosis. Journal of the American Society of Nephrology : Jasn. 23: 1351-63. PMID 22773827 DOI: 10.1681/ASN.2012030271  0.68
2012 Shedden K, Li Y, Ouillette P, Malek SN. Characteristics of chronic lymphocytic leukemia with somatically acquired mutations in NOTCH1 exon 34. Leukemia. 26: 1108-10. PMID 22182918 DOI: 10.1038/leu.2011.361  0.68
2012 Fukuda A, Wickman LT, Venkatareddy MP, Sato Y, Chowdhury MA, Wang SQ, Shedden KA, Dysko RC, Wiggins JE, Wiggins RC. Angiotensin II-dependent persistent podocyte loss from destabilized glomeruli causes progression of end stage kidney disease. Kidney International. 81: 40-55. PMID 21937979 DOI: 10.1038/ki.2011.306  0.68
2012 Park J, Shedden K, Polk TA. Correlation and heritability in neuroimaging datasets: a spatial decomposition approach with application to an fMRI study of twins. Neuroimage. 59: 1132-42. PMID 21763433 DOI: 10.1016/j.neuroimage.2011.06.066  0.68
2011 Sun YV, Zhao W, Shedden KA, Kardia SL. Identification of genes associated with complex traits by testing the genetic dissimilarity between individuals. Bmc Proceedings. 5: S120. PMID 22373401 DOI: 10.1186/1753-6561-5-S9-S120  0.4
2011 Vuong H, Shedden K, Liu Y, Lubman DM. Outlier-Based Differential Expression Analysis in Proteomics Studies. Journal of Proteomics & Bioinformatics. 4: 116-122. PMID 21949600 DOI: 10.4172/jpb.1000177  0.68
2011 Ouillette P, Collins R, Shakhan S, Li J, Li C, Shedden K, Malek SN. The prognostic significance of various 13q14 deletions in chronic lymphocytic leukemia. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 17: 6778-90. PMID 21890456 DOI: 10.1158/1078-0432.CCR-11-0785  0.68
2011 Ouillette P, Collins R, Shakhan S, Li J, Peres E, Kujawski L, Talpaz M, Kaminski M, Li C, Shedden K, Malek SN. Acquired genomic copy number aberrations and survival in chronic lymphocytic leukemia. Blood. 118: 3051-61. PMID 21795749 DOI: 10.1182/blood-2010-12-327858  0.68
2011 Zheng N, Tsai HN, Zhang X, Shedden K, Rosania GR. The subcellular distribution of small molecules: a meta-analysis. Molecular Pharmaceutics. 8: 1611-8. PMID 21774504 DOI: 10.1021/mp200093z  0.68
2011 Cai XW, Shedden KA, Yuan SH, Davis MA, Xu LY, Xie CY, Fu XL, Lawrence TS, Lubman DM, Kong FM. Baseline plasma proteomic analysis to identify biomarkers that predict radiation-induced lung toxicity in patients receiving radiation for non-small cell lung cancer. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 6: 1073-8. PMID 21532507 DOI: 10.1097/JTO.0b013e3182152ba6  0.68
2011 Yang N, Feng S, Shedden K, Xie X, Liu Y, Rosser CJ, Lubman DM, Goodison S. Urinary glycoprotein biomarker discovery for bladder cancer detection using LC/MS-MS and label-free quantification. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 17: 3349-59. PMID 21459797 DOI: 10.1158/1078-0432.CCR-10-3121  0.68
2011 Lin Z, Simeone DM, Anderson MA, Brand RE, Xie X, Shedden KA, Ruffin MT, Lubman DM. Mass spectrometric assay for analysis of haptoglobin fucosylation in pancreatic cancer. Journal of Proteome Research. 10: 2602-11. PMID 21417406 DOI: 10.1021/pr200102h  0.68
2011 Saiya-Cork K, Collins R, Parkin B, Ouillette P, Kuizon E, Kujawski L, Erba H, Campagnaro E, Shedden K, Kaminski M, Malek SN. A pathobiological role of the insulin receptor in chronic lymphocytic leukemia. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 17: 2679-92. PMID 21307146 DOI: 10.1158/1078-0432.CCR-10-2058  0.68
2011 Karg K, Burmeister M, Shedden K, Sen S. The serotonin transporter promoter variant (5-HTTLPR), stress, and depression meta-analysis revisited: evidence of genetic moderation. Archives of General Psychiatry. 68: 444-54. PMID 21199959 DOI: 10.1001/archgenpsychiatry.2010.189  0.68
2010 Parkin B, Erba H, Ouillette P, Roulston D, Purkayastha A, Karp J, Talpaz M, Kujawski L, Shakhan S, Li C, Shedden K, Malek SN. Acquired genomic copy number aberrations and survival in adult acute myelogenous leukemia. Blood. 116: 4958-67. PMID 20729466 DOI: 10.1182/blood-2010-01-266999  0.68
2010 Cai XW, Shedden K, Ao X, Davis M, Fu XL, Lawrence TS, Lubman DM, Kong FM. Plasma proteomic analysis may identify new markers for radiation-induced lung toxicity in patients with non-small-cell lung cancer. International Journal of Radiation Oncology, Biology, Physics. 77: 867-76. PMID 20510197 DOI: 10.1016/j.ijrobp.2010.01.038  0.68
2010 Parkin B, Ouillette P, Wang Y, Liu Y, Wright W, Roulston D, Purkayastha A, Dressel A, Karp J, Bockenstedt P, Al-Zoubi A, Talpaz M, Kujawski L, Liu Y, Shedden K, et al. NF1 inactivation in adult acute myelogenous leukemia. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 16: 4135-47. PMID 20505189 DOI: 10.1158/1078-0432.CCR-09-2639  0.68
2010 Dai L, Li C, Shedden KA, Lee CJ, Li C, Quoc H, Simeone DM, Lubman DM. Quantitative proteomic profiling studies of pancreatic cancer stem cells. Journal of Proteome Research. 9: 3394-402. PMID 20486718 DOI: 10.1021/pr100231m  0.68
2010 Long J, Parkin B, Ouillette P, Bixby D, Shedden K, Erba H, Wang S, Malek SN. Multiple distinct molecular mechanisms influence sensitivity and resistance to MDM2 inhibitors in adult acute myelogenous leukemia. Blood. 116: 71-80. PMID 20404136 DOI: 10.1182/blood-2010-01-261628  0.68
2010 Wiggins JE, Patel SR, Shedden KA, Goyal M, Wharram BL, Martini S, Kretzler M, Wiggins RC. NFkappaB promotes inflammation, coagulation, and fibrosis in the aging glomerulus. Journal of the American Society of Nephrology : Jasn. 21: 587-97. PMID 20150534 DOI: 10.1681/ASN.2009060663  0.68
2010 Shedden K, Rosania GR. Chemical address tags of fluorescent bioimaging probes. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 77: 429-38. PMID 20104576 DOI: 10.1002/cyto.a.20847  0.68
2010 Ouillette P, Fossum S, Parkin B, Ding L, Bockenstedt P, Al-Zoubi A, Shedden K, Malek SN. Aggressive chronic lymphocytic leukemia with elevated genomic complexity is associated with multiple gene defects in the response to DNA double-strand breaks. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 16: 835-47. PMID 20086003 DOI: 10.1158/1078-0432.CCR-09-2534  0.68
2009 Shedden K, Yang Y, Rosania G. Gene expression associations with the growth inhibitory effects of small molecules on live cells: specificity of effects and uniformity of mechanisms. Statistical Analysis and Data Mining. 2: 175-185. PMID 20657799 DOI: 10.1002/sam.10049  0.68
2009 Sun YV, Shedden KA, Zhu J, Choi NH, Kardia SL. Identification of correlated genetic variants jointly associated with rheumatoid arthritis using ridge regression. Bmc Proceedings. 3: S67. PMID 20018061  0.4
2009 Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ. GAGE: generally applicable gene set enrichment for pathway analysis. Bmc Bioinformatics. 10: 161. PMID 19473525 DOI: 10.1186/1471-2105-10-161  0.68
2009 Ju W, Eichinger F, Bitzer M, Oh J, McWeeney S, Berthier CC, Shedden K, Cohen CD, Henger A, Krick S, Kopp JB, Stoeckert CJ, Dikman S, Schröppel B, Thomas DB, et al. Renal gene and protein expression signatures for prediction of kidney disease progression. The American Journal of Pathology. 174: 2073-85. PMID 19465643 DOI: 10.2353/ajpath.2009.080888  0.68
2009 Dai L, Li C, Shedden KA, Misek DE, Lubman DM. Comparative proteomic study of two closely related ovarian endometrioid adenocarcinoma cell lines using cIEF fractionation and pathway analysis. Electrophoresis. 30: 1119-31. PMID 19288585 DOI: 10.1002/elps.200800505  0.68
2009 Shedden K, Li Q, Liu F, Chang YT, Rosania GR. Machine vision-assisted analysis of structure-localization relationships in a combinatorial library of prospective bioimaging probes. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 75: 482-93. PMID 19243023 DOI: 10.1002/cyto.a.20713  0.68
2009 Abdullah NM, Rosania GR, Shedden K. Selective targeting of tumorigenic cancer cell lines by microtubule inhibitors. Plos One. 4: e4470. PMID 19214225 DOI: 10.1371/journal.pone.0004470  0.68
2009 Park J, Rosania GR, Shedden KA, Nguyen M, Lyu N, Saitou K. Automated extraction of chemical structure information from digital raster images. Chemistry Central Journal. 3: 4. PMID 19196483 DOI: 10.1186/1752-153X-3-4  0.68
2009 Wang Y, Wu R, Cho KR, Thomas DG, Gossner G, Liu JR, Giordano TJ, Shedden KA, Misek DE, Lubman DM. Differential protein mapping of ovarian serous adenocarcinomas: identification of potential markers for distinct tumor stage. Journal of Proteome Research. 8: 1452-63. PMID 19159301 DOI: 10.1021/pr800820z  0.68
2009 Li C, Simeone DM, Brenner DE, Anderson MA, Shedden KA, Ruffin MT, Lubman DM. Pancreatic cancer serum detection using a lectin/glyco-antibody array method. Journal of Proteome Research. 8: 483-92. PMID 19072160 DOI: 10.1021/pr8007013  0.68
2009 Cooper S, Shedden K, Vu-Phan D. Invariant mRNA and mitotic protein breakdown solves the Russian Doll problem of the cell cycle. Cell Biology International. 33: 10-8. PMID 18996490 DOI: 10.1016/j.cellbi.2008.10.004  0.68
2008 Kim H, Wu R, Cho KR, Thomas DG, Gossner G, Liu JR, Giordano TJ, Shedden KA, Misek DE, Lubman DM. Comparative proteomic analysis of low stage and high stage endometrioid ovarian adenocarcinomas. Proteomics. Clinical Applications. 2: 571-584. PMID 20523764 DOI: 10.1002/prca.200780004  0.68
2008 Shedden K, Zucker RA. Regularized finite mixture models for probability trajectories. Psychometrika. 73: 625-646. PMID 19956348 DOI: 10.1007/s11336-008-9077-9  0.68
2008 Shedden K, Taylor JM, Enkemann SA, Tsao MS, Yeatman TJ, Gerald WL, Eschrich S, Jurisica I, Giordano TJ, Misek DE, Chang AC, Zhu CQ, Strumpf D, Hanash S, et al. Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study. Nature Medicine. 14: 822-7. PMID 18641660 DOI: 10.1038/nm.1790  0.68
2008 Lee AC, Shedden K, Rosania GR, Crippen GM. Data mining the NCI60 to predict generalized cytotoxicity. Journal of Chemical Information and Modeling. 48: 1379-88. PMID 18588283 DOI: 10.1021/ci800097k  0.68
2008 Kujawski L, Ouillette P, Erba H, Saddler C, Jakubowiak A, Kaminski M, Shedden K, Malek SN. Genomic complexity identifies patients with aggressive chronic lymphocytic leukemia. Blood. 112: 1993-2003. PMID 18436738 DOI: 10.1182/blood-2007-07-099432  0.68
2008 Qiu Y, Patwa TH, Xu L, Shedden K, Misek DE, Tuck M, Jin G, Ruffin MT, Turgeon DK, Synal S, Bresalier R, Marcon N, Brenner DE, Lubman DM. Plasma glycoprotein profiling for colorectal cancer biomarker identification by lectin glycoarray and lectin blot. Journal of Proteome Research. 7: 1693-703. PMID 18311904 DOI: 10.1021/pr700706s  0.68
2008 Ouillette P, Erba H, Kujawski L, Kaminski M, Shedden K, Malek SN. Integrated genomic profiling of chronic lymphocytic leukemia identifies subtypes of deletion 13q14. Cancer Research. 68: 1012-21. PMID 18281475 DOI: 10.1158/0008-5472.CAN-07-3105  0.68
2008 Cho RW, Wang X, Diehn M, Shedden K, Chen GY, Sherlock G, Gurney A, Lewicki J, Clarke MF. Isolation and molecular characterization of cancer stem cells in MMTV-Wnt-1 murine breast tumors. Stem Cells (Dayton, Ohio). 26: 364-71. PMID 17975224 DOI: 10.1634/stemcells.2007-0440  0.68
2008 Saddler C, Ouillette P, Kujawski L, Shangary S, Talpaz M, Kaminski M, Erba H, Shedden K, Wang S, Malek SN. Comprehensive biomarker and genomic analysis identifies p53 status as the major determinant of response to MDM2 inhibitors in chronic lymphocytic leukemia. Blood. 111: 1584-93. PMID 17971485 DOI: 10.1182/blood-2007-09-112698  0.68
2007 Shedden K, Posada MM, Chang YT, Li Q, Rosania G. Prospecting for Live Cell BioImaging Probes With Cheminformatic Assisted Image Arrays (CAIA). Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 1108-1111. PMID 23482717 DOI: 10.1109/ISBI.2007.357050  0.68
2007 Cooper S, Shedden K. Microarrays and the relationship of mRNA variation to protein variation during the cell cycle. Journal of Theoretical Biology. 249: 574-81. PMID 17915257 DOI: 10.1016/j.jtbi.2007.08.019  0.68
2007 Kim JH, Dhanasekaran SM, Mehra R, Tomlins SA, Gu W, Yu J, Kumar-Sinha C, Cao X, Dash A, Wang L, Ghosh D, Shedden K, Montie JE, Rubin MA, Pienta KJ, et al. Integrative analysis of genomic aberrations associated with prostate cancer progression. Cancer Research. 67: 8229-39. PMID 17804737 DOI: 10.1158/0008-5472.CAN-07-1297  0.68
2007 Ross CW, Ouillette PD, Saddler CM, Shedden KA, Malek SN. Comprehensive analysis of copy number and allele status identifies multiple chromosome defects underlying follicular lymphoma pathogenesis. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 13: 4777-85. PMID 17699855 DOI: 10.1158/1078-0432.CCR-07-0456  0.68
2007 Zhao J, Patwa TH, Qiu W, Shedden K, Hinderer R, Misek DE, Anderson MA, Simeone DM, Lubman DM. Glycoprotein microarrays with multi-lectin detection: unique lectin binding patterns as a tool for classifying normal, chronic pancreatitis and pancreatic cancer sera. Journal of Proteome Research. 6: 1864-74. PMID 17428079 DOI: 10.1021/pr070062p  0.68
2007 Rosania GR, Crippen G, Woolf P, States D, Shedden K. A cheminformatic toolkit for mining biomedical knowledge. Pharmaceutical Research. 24: 1791-802. PMID 17385012 DOI: 10.1007/s11095-007-9285-5  0.68
2007 Liu R, Wang X, Chen GY, Dalerba P, Gurney A, Hoey T, Sherlock G, Lewicki J, Shedden K, Clarke MF. The prognostic role of a gene signature from tumorigenic breast-cancer cells. The New England Journal of Medicine. 356: 217-26. PMID 17229949 DOI: 10.1056/NEJMoa063994  0.68
2007 Zhao J, Chang AC, Li C, Shedden KA, Thomas DG, Misek DE, Manoharan AP, Giordano TJ, Beer DG, Lubman DM. Comparative proteomics analysis of Barrett metaplasia and esophageal adenocarcinoma using two-dimensional liquid mass mapping. Molecular & Cellular Proteomics : McP. 6: 987-99. PMID 16829691 DOI: 10.1074/mcp.M600175-MCP200  0.68
2007 Leicht EA, Clarkson G, Shedden K, Newman MEJ. Large-scale structure of time evolving citation networks European Physical Journal B. 59: 75-83. DOI: 10.1140/epjb/e2007-00271-7  0.68
2007 Shedden K. The Effects of Intergene Associations on Statistical Inferences from Microarray Data Statistical Advances in the Biomedical Sciences: Clinical Trials, Epidemiology, Survival Analysis, and Bioinformatics. 307-323. DOI: 10.1002/9780470181218.ch18  0.68
2006 Zhang X, Shedden K, Rosania GR. A cell-based molecular transport simulator for pharmacokinetic prediction and cheminformatic exploration. Molecular Pharmaceutics. 3: 704-16. PMID 17140258 DOI: 10.1021/mp060046k  0.68
2006 Zhu Y, Wu R, Sangha N, Yoo C, Cho KR, Shedden KA, Katabuchi H, Lubman DM. Classifications of ovarian cancer tissues by proteomic patterns. Proteomics. 6: 5846-56. PMID 17068758 DOI: 10.1002/pmic.200600165  0.68
2006 Wang Y, Wu R, Cho KR, Shedden KA, Barder TJ, Lubman DM. Classification of cancer cell lines using an automated two-dimensional liquid mapping method with hierarchical clustering techniques. Molecular & Cellular Proteomics : McP. 5: 43-52. PMID 16141455 DOI: 10.1074/mcp.T500023-MCP200  0.68
2005 Wiggins JE, Goyal M, Sanden SK, Wharram BL, Shedden KA, Misek DE, Kuick RD, Wiggins RC. Podocyte hypertrophy, "adaptation," and "decompensation" associated with glomerular enlargement and glomerulosclerosis in the aging rat: prevention by calorie restriction. Journal of the American Society of Nephrology : Jasn. 16: 2953-66. PMID 16120818 DOI: 10.1681/ASN.2005050488  0.68
2005 Giordano TJ, Kuick R, Thomas DG, Misek DE, Vinco M, Sanders D, Zhu Z, Ciampi R, Roh M, Shedden K, Gauger P, Doherty G, Thompson NW, Hanash S, Koenig RJ, et al. Molecular classification of papillary thyroid carcinoma: distinct BRAF, RAS, and RET/PTC mutation-specific gene expression profiles discovered by DNA microarray analysis. Oncogene. 24: 6646-56. PMID 16007166 DOI: 10.1038/sj.onc.1208822  0.68
2005 Shedden KA, Kshirsagar MP, Schwartz DR, Wu R, Yu H, Misek DE, Hanash S, Katabuchi H, Ellenson LH, Fearon ER, Cho KR. Histologic type, organ of origin, and Wnt pathway status: effect on gene expression in ovarian and uterine carcinomas. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 11: 2123-31. PMID 15788657 DOI: 10.1158/1078-0432.CCR-04-2061  0.68
2005 Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S. Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data. Bmc Bioinformatics. 6: 26. PMID 15705192 DOI: 10.1186/1471-2105-6-26  0.68
2004 Chen VY, Khersonsky SM, Shedden K, Chang YT, Rosania GR. System dynamics of subcellular transport. Molecular Pharmaceutics. 1: 414-25. PMID 16028353  0.68
2004 Shedden K, Rosania GR. Exploratory chemoinformatic analysis of cell type-selective anticancer drug targeting. Molecular Pharmaceutics. 1: 267-80. PMID 15981586  0.68
2003 Michailidis G, Shedden K. The application of rule-based methods to class prediction problems in genomics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 689-98. PMID 14633393 DOI: 10.1089/106652703322539033  0.68
2003 Shedden K, Brumer J, Chang YT, Rosania GR. Chemoinformatic analysis of a supertargeted combinatorial library of styryl molecules. Journal of Chemical Information and Computer Sciences. 43: 2068-80. PMID 14632459 DOI: 10.1021/ci0341215  0.68
2003 Shedden KA, Taylor JM, Giordano TJ, Kuick R, Misek DE, Rennert G, Schwartz DR, Gruber SB, Logsdon C, Simeone D, Kardia SL, Greenson JK, Cho KR, Beer DG, Fearon ER, et al. Accurate molecular classification of human cancers based on gene expression using a simple classifier with a pathological tree-based framework. The American Journal of Pathology. 163: 1985-95. PMID 14578198 DOI: 10.1016/S0002-9440(10)63557-2  0.68
2003 Cooper S, Shedden K. Microarray analysis of gene expression during the cell cycle. Cell & Chromosome. 2: 1. PMID 14577836 DOI: 10.1186/1475-9268-2-1  0.68
2003 Chen G, Gharib TG, Wang H, Huang CC, Kuick R, Thomas DG, Shedden KA, Misek DE, Taylor JM, Giordano TJ, Kardia SL, Iannettoni MD, Yee J, Hogg PJ, Orringer MB, et al. Protein profiles associated with survival in lung adenocarcinoma. Proceedings of the National Academy of Sciences of the United States of America. 100: 13537-42. PMID 14573703 DOI: 10.1073/pnas.2233850100  0.68
2003 Shedden K, Xie XT, Chandaroy P, Chang YT, Rosania GR. Expulsion of small molecules in vesicles shed by cancer cells: association with gene expression and chemosensitivity profiles. Cancer Research. 63: 4331-7. PMID 12907600  0.68
2003 Shedden K, Townsend LB, Drach JC, Rosania GR. A rational approach to personalized anticancer therapy: chemoinformatic analysis reveals mechanistic gene-drug associations. Pharmaceutical Research. 20: 843-7. PMID 12817886 DOI: 10.1023/A:1023893700386  0.68
2003 Schwartz DR, Wu R, Kardia SL, Levin AM, Huang CC, Shedden KA, Kuick R, Misek DE, Hanash SM, Taylor JM, Reed H, Hendrix N, Zhai Y, Fearon ER, Cho KR. Novel candidate targets of beta-catenin/T-cell factor signaling identified by gene expression profiling of ovarian endometrioid adenocarcinomas. Cancer Research. 63: 2913-22. PMID 12782598  0.68
2003 Chen G, Wang H, Gharib TG, Huang CC, Thomas DG, Shedden KA, Kuick R, Taylor JM, Kardia SL, Misek DE, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG. Overexpression of oncoprotein 18 correlates with poor differentiation in lung adenocarcinomas. Molecular & Cellular Proteomics : McP. 2: 107-16. PMID 12644570 DOI: 10.1074/mcp.M200055-MCP200  0.68
2003 Li KC, Aragon Y, Shedden K, Agnan CT. Dimension reduction for multivariate response data Journal of the American Statistical Association. 98: 99-109. DOI: 10.1198/016214503388619139  0.68
2003 Shedden K, Li KC. Dimension reduction and spatiotemporal regression: Applications to neuroimaging Computing in Science and Engineering. 5: 30-36. DOI: 10.1109/MCISE.2003.1225858  0.68
2002 Gharib TG, Chen G, Wang H, Huang CC, Prescott MS, Shedden K, Misek DE, Thomas DG, Giordano TJ, Taylor JM, Kardia S, Yee J, Orringer MB, Hanash S, Beer DG. Proteomic analysis of cytokeratin isoforms uncovers association with survival in lung adenocarcinoma. Neoplasia (New York, N.Y.). 4: 440-8. PMID 12192603 DOI: 10.1038/sj.neo.7900257  0.68
2002 Schwartz DR, Kardia SL, Shedden KA, Kuick R, Michailidis G, Taylor JM, Misek DE, Wu R, Zhai Y, Darrah DM, Reed H, Ellenson LH, Giordano TJ, Fearon ER, Hanash SM, et al. Gene expression in ovarian cancer reflects both morphology and biological behavior, distinguishing clear cell from other poor-prognosis ovarian carcinomas. Cancer Research. 62: 4722-9. PMID 12183431  0.68
2002 Chen G, Gharib TG, Huang CC, Thomas DG, Shedden KA, Taylor JM, Kardia SL, Misek DE, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG. Proteomic analysis of lung adenocarcinoma: identification of a highly expressed set of proteins in tumors. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 8: 2298-305. PMID 12114434  0.68
2002 Shedden K, Cooper S. Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods. Nucleic Acids Research. 30: 2920-9. PMID 12087178  0.68
2002 Shedden K, Cooper S. Analysis of cell-cycle-specific gene expression in human cells as determined by microarrays and double-thymidine block synchronization. Proceedings of the National Academy of Sciences of the United States of America. 99: 4379-84. PMID 11904377 DOI: 10.1073/pnas.062569899  0.68
2002 Li KC, Shedden K. Identification of shared components in large ensembles of time series using dimension reduction Journal of the American Statistical Association. 97: 759-765. DOI: 10.1198/016214502388618573  0.68
2002 Shedden K. Numerical reconstruction of gene expression measurements from mixed cell populations Proceedings - International Symposium On Biomedical Imaging. 2002: 46-49. DOI: 10.1109/ISBI.2002.1029189  0.68
2002 Shedden K. Modeling the influence of disease processes on gene expression Statistica Sinica. 12: 263-272.  0.68
2001 Giordano TJ, Shedden KA, Schwartz DR, Kuick R, Taylor JM, Lee N, Misek DE, Greenson JK, Kardia SL, Beer DG, Rennert G, Cho KR, Gruber SB, Fearon ER, Hanash S. Organ-specific molecular classification of primary lung, colon, and ovarian adenocarcinomas using gene expression profiles. The American Journal of Pathology. 159: 1231-8. PMID 11583950 DOI: 10.1016/S0002-9440(10)62509-6  0.68
2001 Li KC, Shedden K. Monte Carlo Deconvolution of Digital Signals Guided by the Inverse Filter Journal of the American Statistical Association. 96: 1014-1021.  0.68
1999 Muthén B, Shedden K. Finite mixture modeling with mixture outcomes using the EM algorithm. Biometrics. 55: 463-9. PMID 11318201  0.68
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