Joshua S. Weitz - Publications

Affiliations: 
School of Biology Georgia Institute of Technology, Atlanta, GA 

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Bucksch A, Das A, Schneider H, Merchant N, Weitz JS. Overcoming the Law of the Hidden in Cyberinfrastructures. Trends in Plant Science. PMID 28027865 DOI: 10.1016/j.tplants.2016.11.014  0.96
2016 Leung CY, Weitz JS. Conflicting attachment and the growth of bipartite networks. Physical Review. E. 93: 032303. PMID 27078362 DOI: 10.1103/PhysRevE.93.032303  1
2015 Jover LF, Flores CO, Cortez MH, Weitz JS. Multiple regimes of robust patterns between network structure and biodiversity. Scientific Reports. 5: 17856. PMID 26632996 DOI: 10.1038/srep17856  1
2015 Das A, Schneider H, Burridge J, Ascanio AK, Wojciechowski T, Topp CN, Lynch JP, Weitz JS, Bucksch A. Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics. Plant Methods. 11: 51. PMID 26535051 DOI: 10.1186/s13007-015-0093-3  1
2015 Weitz JS, Dushoff J. Modeling post-death transmission of Ebola: challenges for inference and opportunities for control. Scientific Reports. 5: 8751. PMID 25736239 DOI: 10.1038/srep08751  1
2015 Weitz JS, Stock CA, Wilhelm SW, Bourouiba L, Coleman ML, Buchan A, Follows MJ, Fuhrman JA, Jover LF, Lennon JT, Middelboe M, Sonderegger DL, Suttle CA, Taylor BP, Frede Thingstad T, et al. A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. The Isme Journal. 9: 1352-64. PMID 25635642 DOI: 10.1038/ismej.2014.220  1
2015 Flores CO, Poisot T, Valverde S, Weitz JS. BiMat: A MATLAB package to facilitate the analysis of bipartite networks Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.12458  1
2014 Price CA, Weitz JS. Costs and benefits of reticulate leaf venation. Bmc Plant Biology. 14: 234. PMID 25234042 DOI: 10.1186/s12870-014-0234-2  1
2014 Bucksch A, Burridge J, York LM, Das A, Nord E, Weitz JS, Lynch JP. Image-based high-throughput field phenotyping of crop roots. Plant Physiology. 166: 470-86. PMID 25187526 DOI: 10.1104/pp.114.243519  1
2014 Deng L, Ignacio-Espinoza JC, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB. Viral tagging reveals discrete populations in Synechococcus viral genome sequence space. Nature. 513: 242-5. PMID 25043051 DOI: 10.1038/nature13459  1
2014 Childs LM, England WE, Young MJ, Weitz JS, Whitaker RJ. CRISPR-induced distributed immunity in microbial populations. Plos One. 9: e101710. PMID 25000306 DOI: 10.1371/journal.pone.0101710  1
2014 Jover LF, Effler TC, Buchan A, Wilhelm SW, Weitz JS. The elemental composition of virus particles: implications for marine biogeochemical cycles. Nature Reviews. Microbiology. 12: 519-28. PMID 24931044 DOI: 10.1038/nrmicro3289  1
2014 Cortez MH, Weitz JS. Coevolution can reverse predator-prey cycles. Proceedings of the National Academy of Sciences of the United States of America. 111: 7486-91. PMID 24799689 DOI: 10.1073/pnas.1317693111  1
2014 Das A, Bucksch A, Price CA, Weitz JS. ClearedLeavesDB: an online database of cleared plant leaf images. Plant Methods. 10: 8. PMID 24678985 DOI: 10.1186/1746-4811-10-8  1
2014 Taylor BP, Cortez MH, Weitz JS. The virus of my virus is my friend: ecological effects of virophage with alternative modes of coinfection. Journal of Theoretical Biology. 354: 124-36. PMID 24662503 DOI: 10.1016/j.jtbi.2014.03.008  1
2014 Weitz JS. Let my people go (home) to Spain: a genealogical model of Jewish identities since 1492. Plos One. 9: e85673. PMID 24465647 DOI: 10.1371/journal.pone.0085673  1
2014 Bucksch A, Turk G, Weitz JS. The fiber walk: a model of tip-driven growth with lateral expansion. Plos One. 9: e85585. PMID 24465607 DOI: 10.1371/journal.pone.0085585  1
2014 Lee TJ, Parikh RY, Weitz JS, Kim HD. Suppression of expression between adjacent genes within heterologous modules in yeast. G3 (Bethesda, Md.). 4: 109-16. PMID 24281423 DOI: 10.1534/g3.113.007922  1
2014 Price CA, Munro PR, Weitz JS. Estimates of leaf vein density are scale dependent. Plant Physiology. 164: 173-80. PMID 24259686 DOI: 10.1104/pp.113.224451  1
2013 Joh RI, Hoekstra RM, Barzilay EJ, Bowen A, Mintz ED, Weiss H, Weitz JS. Dynamics of shigellosis epidemics: estimating individual-level transmission and reporting rates from national epidemiologic data sets. American Journal of Epidemiology. 178: 1319-26. PMID 24008913 DOI: 10.1093/aje/kwt122  1
2013 Jover LF, Cortez MH, Weitz JS. Mechanisms of multi-strain coexistence in host-phage systems with nested infection networks. Journal of Theoretical Biology. 332: 65-77. PMID 23608631 DOI: 10.1016/j.jtbi.2013.04.011  1
2013 Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Zurek PR, Symonova O, Zheng Y, Bucksch A, Mileyko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, et al. 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proceedings of the National Academy of Sciences of the United States of America. 110: E1695-704. PMID 23580618 DOI: 10.1073/pnas.1304354110  0.96
2013 Taylor B, Lee TJ, Weitz JS. A guide to sensitivity analysis of quantitative models of gene expression dynamics. Methods (San Diego, Calif.). 62: 109-20. PMID 23563144 DOI: 10.1016/j.ymeth.2013.03.007  1
2013 Haegeman B, Hamelin J, Moriarty J, Neal P, Dushoff J, Weitz JS. Robust estimation of microbial diversity in theory and in practice. The Isme Journal. 7: 1092-101. PMID 23407313 DOI: 10.1038/ismej.2013.10  1
2013 Fang S, Clark RT, Zheng Y, Iyer-Pascuzzi AS, Weitz JS, Kochian LV, Edelsbrunner H, Liao H, Benfey PN. Genotypic recognition and spatial responses by rice roots. Proceedings of the National Academy of Sciences of the United States of America. 110: 2670-5. PMID 23362379 DOI: 10.1073/pnas.1222821110  0.6
2013 Cortez MH, Weitz JS. Distinguishing between indirect and direct modes of transmission using epidemiological time series. The American Naturalist. 181: E43-54. PMID 23348785 DOI: 10.1086/668826  1
2013 Mitchell GJ, Wiesenfeld K, Nelson DC, Weitz JS. Critical cell wall hole size for lysis in Gram-positive bacteria. Journal of the Royal Society, Interface / the Royal Society. 10: 20120892. PMID 23303219 DOI: 10.1098/rsif.2012.0892  1
2013 Weitz JS, Poisot T, Meyer JR, Flores CO, Valverde S, Sullivan MB, Hochberg ME. Phage-bacteria infection networks. Trends in Microbiology. 21: 82-91. PMID 23245704 DOI: 10.1016/j.tim.2012.11.003  1
2013 Flores CO, Valverde S, Weitz JS. Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages. The Isme Journal. 7: 520-32. PMID 23178671 DOI: 10.1038/ismej.2012.135  1
2013 Held NL, Childs LM, Davison M, Weitz JS, Whitaker RJ, Bhaya D. CRISPR-Cas systems to probe ecological diversity and host-viral interactions Crispr-Cas Systems: Rna-Mediated Adaptive Immunity in Bacteria and Archaea. 221-250. DOI: 10.1007/978-3-642-34657-6  1
2012 Jiang X, Langille MG, Neches RY, Elliot M, Levin SA, Eisen JA, Weitz JS, Dushoff J. Functional biogeography of ocean microbes revealed through non-negative matrix factorization. Plos One. 7: e43866. PMID 23049741 DOI: 10.1371/journal.pone.0043866  1
2012 Weitz JS, Wilhelm SW. Ocean viruses and their effects on microbial communities and biogeochemical cycles. F1000 Biology Reports. 4: 17. PMID 22991582 DOI: 10.3410/B4-17  1
2012 Price CA, Weitz JS, Savage VM, Stegen J, Clarke A, Coomes DA, Dodds PS, Etienne RS, Kerkhoff AJ, McCulloh K, Niklas KJ, Olff H, Swenson NG, Chave J. Testing the metabolic theory of ecology. Ecology Letters. 15: 1465-74. PMID 22931542 DOI: 10.1111/j.1461-0248.2012.01860.x  1
2012 Galkovskyi T, Mileyko Y, Bucksch A, Moore B, Symonova O, Price CA, Topp CN, Iyer-Pascuzzi AS, Zurek PR, Fang S, Harer J, Benfey PN, Weitz JS. GiA Roots: software for the high throughput analysis of plant root system architecture. Bmc Plant Biology. 12: 116. PMID 22834569 DOI: 10.1186/1471-2229-12-116  1
2012 Childs LM, Held NL, Young MJ, Whitaker RJ, Weitz JS. Multiscale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin. Evolution; International Journal of Organic Evolution. 66: 2015-29. PMID 22759281 DOI: 10.1111/j.1558-5646.2012.01595.x  1
2012 Mileyko Y, Edelsbrunner H, Price CA, Weitz JS. Hierarchical ordering of reticular networks. Plos One. 7: e36715. PMID 22701559 DOI: 10.1371/journal.pone.0036715  1
2012 Haegeman B, Weitz JS. A neutral theory of genome evolution and the frequency distribution of genes. Bmc Genomics. 13: 196. PMID 22613814 DOI: 10.1186/1471-2164-13-196  1
2012 Price CA, Weitz JS. Allometric covariation: a hallmark behavior of plants and leaves. The New Phytologist. 193: 882-9. PMID 22403825 DOI: 10.1111/j.1469-8137.2011.04022.x  1
2012 Meyer JR, Dobias DT, Weitz JS, Barrick JE, Quick RT, Lenski RE. Repeatability and contingency in the evolution of a key innovation in phage lambda. Science (New York, N.Y.). 335: 428-32. PMID 22282803 DOI: 10.1126/science.1214449  1
2012 Price CA, Wing S, Weitz JS. Scaling and structure of dicotyledonous leaf venation networks. Ecology Letters. 15: 87-95. PMID 22093803 DOI: 10.1111/j.1461-0248.2011.01712.x  1
2012 Jiang X, Weitz JS, Dushoff J. A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data. Journal of Mathematical Biology. 64: 697-711. PMID 21630089 DOI: 10.1007/s00285-011-0428-2  1
2011 Menge DN, Ballantyne F, Weitz JS. Dynamics of nutrient uptake strategies: lessons from the tortoise and the hare. Theoretical Ecology. 4: 163-177. PMID 25540674 DOI: 10.1007/s12080-010-0110-0  1
2011 Flores CO, Meyer JR, Valverde S, Farr L, Weitz JS. Statistical structure of host-phage interactions. Proceedings of the National Academy of Sciences of the United States of America. 108: E288-97. PMID 21709225 DOI: 10.1073/pnas.1101595108  1
2011 Joh RI, Weitz JS. To lyse or not to lyse: transient-mediated stochastic fate determination in cells infected by bacteriophages. Plos Computational Biology. 7: e1002006. PMID 21423715 DOI: 10.1371/journal.pcbi.1002006  1
2011 Kislyuk AO, Haegeman B, Bergman NH, Weitz JS. Genomic fluidity: an integrative view of gene diversity within microbial populations. Bmc Genomics. 12: 32. PMID 21232151 DOI: 10.1186/1471-2164-12-32  1
2011 Price CA, Symonova O, Mileyko Y, Hilley T, Weitz JS. Leaf extraction and analysis framework graphical user interface: segmenting and analyzing the structure of leaf veins and areoles. Plant Physiology. 155: 236-45. PMID 21057114 DOI: 10.1104/pp.110.162834  1
2011 Serra M, Smith HA, Weitz JS, Snell TW. Analysing threshold effects in the sexual dynamics of cyclically parthenogenetic rotifer populations Hydrobiologia. 662: 121-130. DOI: 10.1007/s10750-010-0517-z  1
2010 Price CA, Weitz JS. Zero-sum allocational strategies determine the allometry of specific leaf area. American Journal of Botany. 97: 1808-15. PMID 21616820 DOI: 10.3732/ajb.1000118  1
2010 Mitchell GJ, Nelson DC, Weitz JS. Quantifying enzymatic lysis: estimating the combined effects of chemistry, physiology and physics. Physical Biology. 7: 046002. PMID 20921589 DOI: 10.1088/1478-3975/7/4/046002  1
2010 Price CA, Gilooly JF, Allen AP, Weitz JS, Niklas KJ. The metabolic theory of ecology: prospects and challenges for plant biology. The New Phytologist. 188: 696-710. PMID 20819176 DOI: 10.1111/j.1469-8137.2010.03442.x  1
2010 Gudelj I, Weitz JS, Ferenci T, Claire Horner-Devine M, Marx CJ, Meyer JR, Forde SE. An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure. Ecology Letters. 13: 1073-84. PMID 20576029 DOI: 10.1111/j.1461-0248.2010.01507.x  1
2010 Iyer-Pascuzzi AS, Symonova O, Mileyko Y, Hao Y, Belcher H, Harer J, Weitz JS, Benfey PN. Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiology. 152: 1148-57. PMID 20107024 DOI: 10.1104/pp.109.150748  0.64
2010 Boettiger C, Dushoff J, Weitz JS. Fluctuation domains in adaptive evolution. Theoretical Population Biology. 77: 6-13. PMID 19843477 DOI: 10.1016/j.tpb.2009.10.003  1
2010 Ballantyne F, Menge DNL, Weitz JS. A discrepancy between predictions of saturating nutrient uptake models and nitrogen-to-phosphorus stoichiometry in the surface ocean Limnology and Oceanography. 55: 997-1008. DOI: 10.4319/lo.2010.55.3.0997  1
2010 Miieyko Y, Weitz JS. Bifurcation analysis of gene regulatory circuits subject to copy number variation Siam Journal On Applied Dynamical Systems. 9: 799-826. DOI: 10.1137/090771247  1
2009 Kislyuk A, Bhatnagar S, Dushoff J, Weitz JS. Unsupervised statistical clustering of environmental shotgun sequences. Bmc Bioinformatics. 10: 316. PMID 19799776 DOI: 10.1186/1471-2105-10-316  1
2009 Wang H, Jiang L, Weitz JS. Bacterivorous grazers facilitate organic matter decomposition: a stoichiometric modeling approach. Fems Microbiology Ecology. 69: 170-9. PMID 19486152 DOI: 10.1111/j.1574-6941.2009.00699.x  1
2009 Price CA, Ogle K, White EP, Weitz JS. Evaluating scaling models in biology using hierarchical Bayesian approaches. Ecology Letters. 12: 641-51. PMID 19453621 DOI: 10.1111/j.1461-0248.2009.01316.x  1
2009 Joh RI, Wang H, Weiss H, Weitz JS. Dynamics of indirectly transmitted infectious diseases with immunological threshold. Bulletin of Mathematical Biology. 71: 845-62. PMID 19096894 DOI: 10.1007/s11538-008-9384-4  1
2009 Menge DN, Weitz JS. Dangerous nutrients: evolution of phytoplankton resource uptake subject to virus attack. Journal of Theoretical Biology. 257: 104-15. PMID 19068219 DOI: 10.1016/j.jtbi.2008.10.032  1
2008 Mileyko Y, Joh RI, Weitz JS. Small-scale copy number variation and large-scale changes in gene expression. Proceedings of the National Academy of Sciences of the United States of America. 105: 16659-64. PMID 18946033 DOI: 10.1073/pnas.0806239105  1
2008 Weitz JS, Mileyko Y, Joh RI, Voit EO. Collective decision making in bacterial viruses. Biophysical Journal. 95: 2673-80. PMID 18567629 DOI: 10.1529/biophysj.108.133694  1
2008 Weitz JS, Dushoff J. Alternative stable states in host - Phage dynamics Theoretical Ecology. 1: 13-19. DOI: 10.1007/s12080-007-0001-1  1
2008 Weitz JS. Evolutionary ecology of bacterial viruses Microbe. 3: 171-178.  1
2007 Baskett ML, Weitz JS, Levin SA. The evolution of dispersal in reserve networks. The American Naturalist. 170: 59-78. PMID 17853992 DOI: 10.1086/518184  1
2007 Weitz JS, Benfey PN, Wingreen NS. Evolution, interactions, and biological networks. Plos Biology. 5: e11. PMID 17227140 DOI: 10.1371/journal.pbio.0050011  0.56
2007 Muneepeerakul R, Weitz JS, Levin SA, Rinaldo A, Rodriguez-Iturbe I. A neutral metapopulation model of biodiversity in river networks. Journal of Theoretical Biology. 245: 351-63. PMID 17109896 DOI: 10.1016/j.jtbi.2006.10.005  1
2006 Weitz JS, Levin SA. Size and scaling of predator-prey dynamics. Ecology Letters. 9: 548-57. PMID 16643300 DOI: 10.1111/j.1461-0248.2006.00900.x  1
2006 Weitz JS, Hartman H. Phage in the time of cholera. The Lancet. Infectious Diseases. 6: 257-8. PMID 16631542 DOI: 10.1016/S1473-3099(06)70445-5  1
2006 Weitz JS, Ogle K, Horn HS. Ontogenetically stable hydraulic design in woody plants Functional Ecology. 20: 191-199. DOI: 10.1111/j.1365-2435.2006.01083.x  1
2005 Weitz JS, Hartman H, Levin SA. Coevolutionary arms races between bacteria and bacteriophage. Proceedings of the National Academy of Sciences of the United States of America. 102: 9535-40. PMID 15976021 DOI: 10.1073/pnas.0504062102  1
2005 Pie MR, Weitz JS. A null model of morphospace occupation. The American Naturalist. 166: E1-13. PMID 15937783 DOI: 10.1086/430727  1
2004 Weitz JS, Rothman DH. Dynamics of a contact process with ontogeny. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 021915. PMID 15447523 DOI: 10.1103/PhysRevE.70.021915  1
2003 Weitz JS, Rothman DH. Scale-dependence of resource-biodiversity relationships. Journal of Theoretical Biology. 225: 205-14. PMID 14575654 DOI: 10.1016/S0022-5193(03)00239-X  1
2003 Dodds PS, Weitz JS. Packing-limited growth of irregular objects. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 016117. PMID 12636574 DOI: 10.1103/PhysRevE.65.056108  1
2001 Weitz JS, Fraser HB. Explaining mortality rate plateaus. Proceedings of the National Academy of Sciences of the United States of America. 98: 15383-6. PMID 11752476 DOI: 10.1073/pnas.261228098  1
2001 Dodds PS, Rothman DH, Weitz JS. Re-examination of the "3/4-law" of metabolism. Journal of Theoretical Biology. 209: 9-27. PMID 11237567 DOI: 10.1006/jtbi.2000.2238  1
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