Sophia Ananiadou - Publications

National Centre for Text Mining, Manchester Interdisciplinary Biocentre University of Manchester, Manchester, England, United Kingdom 

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Year Citation  Score
2023 Xie Q, Tiwari P, Ananiadou S. Knowledge-enhanced Graph Topic Transformer for Explainable Biomedical Text Summarization. Ieee Journal of Biomedical and Health Informatics. PMID 37610905 DOI: 10.1109/JBHI.2023.3308064  0.322
2021 Wang K, Stevens R, Alachram H, Li Y, Soldatova L, King R, Ananiadou S, Schoene AM, Li M, Christopoulou F, Ambite JL, Matthew J, Garg S, Hermjakob U, Marcu D, et al. NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding. Npj Systems Biology and Applications. 7: 38. PMID 34671039 DOI: 10.1038/s41540-021-00200-x  0.356
2020 Tran TT, Miwa M, Ananiadou S. Syntactically-informed word representations from graph neural network. Neurocomputing. 413: 431-443. PMID 33162674 DOI: 10.1016/J.Neucom.2020.06.070  0.434
2020 Trieu HL, Tran TT, Duong KNA, Nguyen A, Miwa M, Ananiadou S. DeepEventMine: end-to-end neural nested event extraction from biomedical texts. Bioinformatics (Oxford, England). PMID 33141147 DOI: 10.1093/Bioinformatics/Btaa540  0.351
2019 Ju M, Short AD, Thompson P, Bakerly ND, Gkoutos GV, Tsaprouni L, Ananiadou S. Annotating and detecting phenotypic information for chronic obstructive pulmonary disease. Jamia Open. 2: 261-271. PMID 31984360 DOI: 10.1093/Jamiaopen/Ooz009  0.305
2019 Wang Y, Ananiadou S, Tsujii J. Improving clinical named entity recognition in Chinese using the graphical and phonetic feature. Bmc Medical Informatics and Decision Making. 19: 273. PMID 31865903 DOI: 10.1186/S12911-019-0980-Z  0.409
2019 Brockmeier AJ, Ju M, Przybyła P, Ananiadou S. Improving reference prioritisation with PICO recognition. Bmc Medical Informatics and Decision Making. 19: 256. PMID 31805934 DOI: 10.1186/S12911-019-0992-8  0.394
2019 Wang Y, Fan X, Chen L, Chang EI, Ananiadou S, Tsujii J, Xu Y. Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries. Bmc Bioinformatics. 20: 430. PMID 31419946 DOI: 10.1186/S12859-019-3005-0  0.357
2019 Ju M, Nguyen NTH, Miwa M, Ananiadou S. An ensemble of neural models for nested adverse drug events and medication extraction with subwords. Journal of the American Medical Informatics Association : Jamia. PMID 31197355 DOI: 10.1093/Jamia/Ocz075  0.315
2019 Iliopoulos I, Ananiadou S, Danchin A, Ioannidis JP, Katsikis PD, Ouzounis CA, Promponas VJ. Hypothesis, analysis and synthesis, it's all Greek to me. Elife. 8. PMID 30782313 DOI: 10.7554/Elife.43514  0.339
2019 Nguyen NTH, Gabud RS, Ananiadou S. COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature. Biodiversity Data Journal. e29626. PMID 30700967 DOI: 10.3897/Bdj.7.E29626  0.381
2018 Shardlow M, Ju M, Li M, O'Reilly C, Iavarone E, McNaught J, Ananiadou S. A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience. Neuroinformatics. PMID 30443819 DOI: 10.1007/S12021-018-9404-Y  0.42
2018 Soto AJ, Przybyla P, Ananiadou S. Thalia: Semantic search engine for biomedical abstracts. Bioinformatics (Oxford, England). PMID 30329013 DOI: 10.1093/Bioinformatics/Bty871  0.393
2018 Thompson P, Daikou S, Ueno K, Batista-Navarro R, Tsujii J, Ananiadou S. Annotation and detection of drug effects in text for pharmacovigilance. Journal of Cheminformatics. 10: 37. PMID 30105604 DOI: 10.1186/S13321-018-0290-Y  0.41
2018 Przybyła P, Brockmeier AJ, Kontonatsios G, Le Pogam MA, McNaught J, von Elm E, Nolan K, Ananiadou S. Prioritising references for systematic reviews with RobotAnalyst: A user study. Research Synthesis Methods. 9: 470-488. PMID 29956486 DOI: 10.1002/Jrsm.1311  0.38
2018 Shardlow M, Batista-Navarro R, Thompson P, Nawaz R, McNaught J, Ananiadou S. Identification of research hypotheses and new knowledge from scientific literature. Bmc Medical Informatics and Decision Making. 18: 46. PMID 29940927 DOI: 10.1186/S12911-018-0639-1  0.424
2018 Soto AJ, Zerva C, Batista-Navarro R, Ananiadou S. LitPathExplorer: a confidence-based visual text analytics tool for exploring literature-enriched pathway models. Bioinformatics (Oxford, England). 34: 1389-1397. PMID 29228271 DOI: 10.1093/Bioinformatics/Btx774  0.4
2018 Thompson P, Ananiadou S. HYPHEN: A flexible, hybrid method to map phenotype concept mentions to terminological resources Terminology. 24: 91-121. DOI: 10.1075/Term.00015.Tho  0.416
2017 Zerva C, Batista-Navarro R, Day P, Ananiadou S. Using uncertainty to link and rank evidence from biomedical literature for model curation. Bioinformatics (Oxford, England). PMID 29036627 DOI: 10.1093/Bioinformatics/Btx466  0.388
2017 Swainston N, Batista-Navarro R, Carbonell P, Dobson PD, Dunstan M, Jervis AJ, Vinaixa M, Williams AR, Ananiadou S, Faulon JL, Mendes P, Kell DB, Scrutton NS, Breitling R. biochem4j: Integrated and extensible biochemical knowledge through graph databases. Plos One. 12: e0179130. PMID 28708831 DOI: 10.1371/Journal.Pone.0179130  0.402
2017 Kontonatsios G, Brockmeier AJ, Przybyła P, McNaught J, Mu T, Goulermas JY, Ananiadou S. A semi-supervised approach using label propagation to support citation screening. Journal of Biomedical Informatics. PMID 28648605 DOI: 10.1016/J.Jbi.2017.06.018  0.386
2017 Mu T, Goulermas YJ, Ananiadou S. Data Visualization with Structural Control of Global Cohort and Local Data Neighborhoods. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 28641245 DOI: 10.1109/Tpami.2017.2715806  0.317
2017 Nguyen NTH, Soto AJ, Kontonatsios G, Batista-Navarro R, Ananiadou S. Constructing a biodiversity terminological inventory. Plos One. 12: e0175277. PMID 28414821 DOI: 10.1371/Journal.Pone.0175277  0.478
2016 Venkatesan A, Kim JH, Talo F, Ide-Smith M, Gobeill J, Carter J, Batista-Navarro R, Ananiadou S, Ruch P, McEntyre J. SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data. Wellcome Open Research. 1: 25. PMID 28948232 DOI: 10.12688/wellcomeopenres.10210.2  0.307
2016 Przybyła P, Shardlow M, Aubin S, Bossy R, Eckart de Castilho R, Piperidis S, McNaught J, Ananiadou S. Text mining resources for the life sciences. Database : the Journal of Biological Databases and Curation. 2016. PMID 27888231 DOI: 10.1093/Database/Baw145  0.444
2016 Alnazzawi N, Thompson P, Ananiadou S. Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource. Plos One. 11: e0162287. PMID 27643689 DOI: 10.1371/Journal.Pone.0162287  0.447
2016 Kim S, Islamaj Doğan R, Chatr-Aryamontri A, Chang CS, Oughtred R, Rust J, Batista-Navarro R, Carter J, Ananiadou S, Matos S, Santos A, Campos D, Oliveira JL, Singh O, Jonnagaddala J, et al. BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database : the Journal of Biological Databases and Curation. 2016. PMID 27589962 DOI: 10.1093/Database/Baw121  0.403
2016 Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, et al. Overview of the interactive task in BioCreative V. Database : the Journal of Biological Databases and Curation. 2016. PMID 27589961 DOI: 10.1093/Database/Baw119  0.355
2016 Hashimoto K, Kontonatsios G, Miwa M, Ananiadou S. Topic detection using paragraph vectors to support active learning in systematic reviews Journal of Biomedical Informatics. 62: 59-65. PMID 27293211 DOI: 10.1016/J.Jbi.2016.06.001  0.388
2016 Batista-Navarro R, Carter J, Ananiadou S. Argo: enabling the development of bespoke workflows and services for disease annotation. Database : the Journal of Biological Databases and Curation. 2016. PMID 27189607 DOI: 10.1093/Database/Baw066  0.41
2016 Thompson P, Batista-Navarro RT, Kontonatsios G, Carter J, Toon E, McNaught J, Timmermann C, Worboys M, Ananiadou S. Text Mining the History of Medicine. Plos One. 11: e0144717. PMID 26734936 DOI: 10.1371/Journal.Pone.0144717  0.462
2015 Mo Y, Kontonatsios G, Ananiadou S. Supporting systematic reviews using LDA-based document representations. Systematic Reviews. 4: 172. PMID 26612232 DOI: 10.1186/S13643-015-0117-0  0.452
2015 Pyysalo S, Ohta T, Rak R, Rowley A, Chun HW, Jung SJ, Choi SP, Tsujii J, Ananiadou S. Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013. Bmc Bioinformatics. 16: S2. PMID 26202570 DOI: 10.1186/1471-2105-16-S10-S2  0.356
2015 Miwa M, Ananiadou S. Adaptable, high recall, event extraction system with minimal configuration. Bmc Bioinformatics. 16: 1-11. PMID 26201408 DOI: 10.1186/1471-2105-16-S10-S7  0.36
2015 Alnazzawi N, Thompson P, Batista-Navarro R, Ananiadou S. Using text mining techniques to extract phenotypic information from the PhenoCHF corpus. Bmc Medical Informatics and Decision Making. 15: S3. PMID 26099853 DOI: 10.1186/1472-6947-15-S2-S3  0.443
2015 Bollegala D, Kontonatsios G, Ananiadou S. A cross-lingual similarity measure for detecting biomedical term translations. Plos One. 10: e0126196. PMID 26030738 DOI: 10.1371/Journal.Pone.0126196  0.403
2015 Xu Y, Chen L, Wei J, Ananiadou S, Fan Y, Qian Y, Chang EI, Tsujii J. Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary. Bmc Bioinformatics. 16: 149. PMID 25956056 DOI: 10.1186/S12859-015-0606-0  0.39
2015 Batista-Navarro R, Rak R, Ananiadou S. Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics. Journal of Cheminformatics. 7: S6. PMID 25810777 DOI: 10.1186/1758-2946-7-S1-S6  0.414
2015 Fu X, Batista-Navarro R, Rak R, Ananiadou S. Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows. Journal of Biomedical Semantics. 6: 8. PMID 25789153 DOI: 10.1186/S13326-015-0004-6  0.317
2015 O'Mara-Eves A, Thomas J, McNaught J, Miwa M, Ananiadou S. Using text mining for study identification in systematic reviews: a systematic review of current approaches. Systematic Reviews. 4: 5. PMID 25588314 DOI: 10.1186/2046-4053-4-5  0.399
2015 Ananiadou S, Thompson P, Nawaz R, McNaught J, Kell DB. Event-based text mining for biology and functional genomics. Briefings in Functional Genomics. 14: 213-30. PMID 24907365 DOI: 10.1093/Bfgp/Elu015  0.42
2015 Gou Y, Graff F, Kilian O, Kafkas S, Katuri J, Kim JH, Marinos N, McEntyre J, Morrison A, Pi X, Rossiter P, Talo F, Vartak V, Coleman LA, Hawkins C, ... ... Ananiadou S, et al. Europe PMC: A full-text literature database for the life sciences and platform for innovation Nucleic Acids Research. 43: D1042-D1048. DOI: 10.1093/Nar/Gku1061  0.331
2015 Korkontzelos I, Piliouras D, Dowsey AW, Ananiadou S. Boosting drug named entity recognition using an aggregate classifier Artificial Intelligence in Medicine. 65: 145-153. DOI: 10.1016/J.Artmed.2015.05.007  0.354
2014 Mih?il? C, Ananiadou S. Semi-supervised learning of causal relations in biomedical scientific discourse. Biomedical Engineering Online. 13: S1. PMID 25559746 DOI: 10.1186/1475-925X-13-S2-S1  0.458
2014 Xu Y, Hua J, Ni Z, Chen Q, Fan Y, Ananiadou S, Chang EI, Tsujii J. Anatomical entity recognition with a hierarchical framework augmented by external resources. Plos One. 9: e108396. PMID 25343498 DOI: 10.1371/Journal.Pone.0108396  0.392
2014 Stenetorp P, Pyysalo S, Ananiadou S, Tsujii J. Generalising semantic category disambiguation with large lexical resources for fun and profit. Journal of Biomedical Semantics. 5: 26. PMID 25093067 DOI: 10.1186/2041-1480-5-26  0.448
2014 Rak R, Batista-Navarro RT, Rowley A, Carter J, Ananiadou S. Text-mining-assisted biocuration workflows in Argo. Database : the Journal of Biological Databases and Curation. 2014. PMID 25037308 DOI: 10.1093/Database/Bau070  0.441
2014 Rak R, Batista-Navarro RT, Carter J, Rowley A, Ananiadou S. Processing biological literature with customizable Web services supporting interoperable formats. Database : the Journal of Biological Databases and Curation. 2014. PMID 25006225 DOI: 10.1093/Database/Bau064  0.345
2014 Miwa M, Thomas J, O'Mara-Eves A, Ananiadou S. Reducing systematic review workload through certainty-based screening. Journal of Biomedical Informatics. 51: 242-53. PMID 24954015 DOI: 10.1016/J.Jbi.2014.06.005  0.348
2014 Pyysalo S, Ananiadou S. Anatomical entity mention recognition at literature scale. Bioinformatics (Oxford, England). 30: 868-75. PMID 24162468 DOI: 10.1093/Bioinformatics/Btt580  0.495
2013 Mih?il? C, Ananiadou S. Recognising discourse causality triggers in the biomedical domain. Journal of Bioinformatics and Computational Biology. 11: 1343008. PMID 24372037 DOI: 10.1142/S0219720013430087  0.429
2013 Miwa M, Ohta T, Rak R, Rowley A, Kell DB, Pyysalo S, Ananiadou S. A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text. Bioinformatics (Oxford, England). 29: i44-52. PMID 23813008 DOI: 10.1093/Bioinformatics/Btt227  0.412
2013 Miwa M, Pyysalo S, Ohta T, Ananiadou S. Wide coverage biomedical event extraction using multiple partially overlapping corpora. Bmc Bioinformatics. 14: 175. PMID 23731785 DOI: 10.1186/1471-2105-14-175  0.446
2013 Van Landeghem S, Björne J, Wei CH, Hakala K, Pyysalo S, Ananiadou S, Kao HY, Lu Z, Salakoski T, Van de Peer Y, Ginter F. Large-scale event extraction from literature with multi-level gene normalization. Plos One. 8: e55814. PMID 23613707 DOI: 10.1371/Journal.Pone.0055814  0.458
2013 Restificar A, Korkontzelos I, Ananiadou S. A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data. Bmc Medical Informatics and Decision Making. 13: S6. PMID 23566239 DOI: 10.1186/1472-6947-13-S1-S6  0.332
2013 Kontonatsios G, Korkontzelos I, Kolluru B, Thompson P, Ananiadou S. Deploying and sharing U-Compare workflows as web services. Journal of Biomedical Semantics. 4: 7. PMID 23419017 DOI: 10.1186/2041-1480-4-7  0.36
2013 Nawaz R, Thompson P, Ananiadou S. Negated bio-events: analysis and identification. Bmc Bioinformatics. 14: 14. PMID 23323936 DOI: 10.1186/1471-2105-14-14  0.367
2013 Mih?il? C, Ohta T, Pyysalo S, Ananiadou S. BioCause: Annotating and analysing causality in the biomedical domain. Bmc Bioinformatics. 14: 2. PMID 23323613 DOI: 10.1186/1471-2105-14-2  0.443
2013 Ananiadou S, Thompson P, Nawaz R. "Mining events from the literature for bioinformatics applications" by S. Ananiadou, P. Thompson, and R. Nawaz; with Martin Vesely as coordinator Acm Sigweb Newsletter. 2013: 5. DOI: 10.1145/2528272.2528277  0.452
2013 Ananiadou S, Ohta T, Rutter MK. Text Mining Supporting Search for Knowledge Discovery in Diabetes Current Cardiovascular Risk Reports. 7: 1-8. DOI: 10.1007/S12170-012-0288-3  0.36
2012 Mu T, Goulermas JY, Tsujii J, Ananiadou S. Proximity-based frameworks for generating embeddings from multi-output data. Ieee Transactions On Pattern Analysis and Machine Intelligence. 34: 2216-32. PMID 23289130 DOI: 10.1109/Tpami.2012.20  0.397
2012 Pyysalo S, Ohta T, Miwa M, Cho HC, Tsujii J, Ananiadou S. Event extraction across multiple levels of biological organization. Bioinformatics (Oxford, England). 28: i575-i581. PMID 22962484 DOI: 10.1093/Bioinformatics/Bts407  0.4
2012 Pyysalo S, Ohta T, Rak R, Sullivan D, Mao C, Wang C, Sobral B, Tsujii J, Ananiadou S. Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. Bmc Bioinformatics. 13: S2. PMID 22759456 DOI: 10.1186/1471-2105-13-S11-S2  0.352
2012 Miwa M, Thompson P, McNaught J, Kell DB, Ananiadou S. Extracting semantically enriched events from biomedical literature. Bmc Bioinformatics. 13: 108. PMID 22621266 DOI: 10.1186/1471-2105-13-108  0.441
2012 Korkontzelos I, Mu T, Ananiadou S. ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials. Bmc Medical Informatics and Decision Making. 12: S3. PMID 22595088 DOI: 10.1186/1472-6947-12-S1-S3  0.349
2012 Miwa M, Thompson P, Ananiadou S. Boosting automatic event extraction from the literature using domain adaptation and coreference resolution. Bioinformatics (Oxford, England). 28: 1759-65. PMID 22539668 DOI: 10.1093/Bioinformatics/Bts237  0.371
2012 Rak R, Rowley A, Black W, Ananiadou S. Argo: an integrative, interactive, text mining-based workbench supporting curation. Database : the Journal of Biological Databases and Curation. 2012: bas010. PMID 22434844 DOI: 10.1093/Database/Bas010  0.431
2011 Thomas J, McNaught J, Ananiadou S. Applications of text mining within systematic reviews. Research Synthesis Methods. 2: 1-14. PMID 26061596 DOI: 10.1002/Jrsm.27  0.367
2011 Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, ... ... Ananiadou S, et al. U-Compare bio-event meta-service: compatible BioNLP event extraction services. Bmc Bioinformatics. 12: 481. PMID 22177292 DOI: 10.1186/1471-2105-12-481  0.344
2011 Wang X, Rak R, Restificar A, Nobata C, Rupp CJ, Batista-Navarro RT, Nawaz R, Ananiadou S. Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature. Bmc Bioinformatics. 12: S11. PMID 22151769 DOI: 10.1186/1471-2105-12-S8-S11  0.418
2011 Thompson P, McNaught J, Montemagni S, Calzolari N, del Gratta R, Lee V, Marchi S, Monachini M, Pezik P, Quochi V, Rupp CJ, Sasaki Y, Venturi G, Rebholz-Schuhmann D, Ananiadou S. The BioLexicon: a large-scale terminological resource for biomedical text mining. Bmc Bioinformatics. 12: 397. PMID 21992002 DOI: 10.1186/1471-2105-12-397  0.459
2011 Kolluru B, Nakjang S, Hirt RP, Wipat A, Ananiadou S. Automatic extraction of microorganisms and their habitats from free text using text mining workflows. Journal of Integrative Bioinformatics. 8: 184. PMID 21987583 DOI: 10.2390/Biecoll-Jib-2011-184  0.396
2011 Thompson P, Nawaz R, McNaught J, Ananiadou S. Enriching a biomedical event corpus with meta-knowledge annotation. Bmc Bioinformatics. 12: 393. PMID 21985429 DOI: 10.1186/1471-2105-12-393  0.435
2011 Wang X, McKendrick I, Barrett I, Dix I, French T, Tsujii J, Ananiadou S. Automatic extraction of angiogenesis bioprocess from text. Bioinformatics (Oxford, England). 27: 2730-7. PMID 21821664 DOI: 10.1093/Bioinformatics/Btr460  0.458
2011 Nobata C, Dobson PD, Iqbal SA, Mendes P, Tsujii J, Kell DB, Ananiadou S. Mining metabolites: extracting the yeast metabolome from the literature. Metabolomics : Official Journal of the Metabolomic Society. 7: 94-101. PMID 21687783 DOI: 10.1007/S11306-010-0251-6  0.399
2011 Kolluru B, Hawizy L, Murray-Rust P, Tsujii J, Ananiadou S. Using workflows to explore and optimise named entity recognition for chemistry. Plos One. 6: e20181. PMID 21633495 DOI: 10.1371/Journal.Pone.0020181  0.414
2011 Ananiadou S, Sullivan D, Black W, Levow GA, Gillespie JJ, Mao C, Pyysalo S, Kolluru B, Tsujii J, Sobral B. Named entity recognition for bacterial Type IV secretion systems. Plos One. 6: e14780. PMID 21468321 DOI: 10.1371/Journal.Pone.0014780  0.4
2011 Kocbek S, Sætre R, Stiglic G, Kim JD, Pernek I, Tsuruoka Y, Kokol P, Ananiadou S, Tsujii J. AGRA: analysis of gene ranking algorithms. Bioinformatics (Oxford, England). 27: 1185-6. PMID 21349873 DOI: 10.1093/Bioinformatics/Btr097  0.31
2011 McEntyre JR, Ananiadou S, Andrews S, Black WJ, Boulderstone R, Buttery P, Chaplin D, Chevuru S, Cobley N, Coleman LA, Davey P, Gupta B, Haji-Gholam L, Hawkins C, Horne A, et al. UKPMC: a full text article resource for the life sciences. Nucleic Acids Research. 39: D58-65. PMID 21062818 DOI: 10.1093/Nar/Gkq1063  0.446
2011 Kano Y, Miwa M, Cohen KB, Hunter LE, Ananiadou S, Tsujii J. U-Compare: A modular NLP workflow construction and evaluation system Ibm Journal of Research and Development. 55. DOI: 10.1147/Jrd.2011.2105691  0.405
2010 Kano Y, Dobson P, Nakanishi M, Tsujii J, Ananiadou S. Text mining meets workflow: linking U-Compare with Taverna. Bioinformatics (Oxford, England). 26: 2486-7. PMID 20709690 DOI: 10.1093/Bioinformatics/Btq464  0.369
2010 Ananiadou S, Thompson P, Thomas J, Mu T, Oliver S, Rickinson M, Sasaki Y, Weissenbacher D, McNaught J. Supporting the education evidence portal via text mining. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 368: 3829-44. PMID 20643679 DOI: 10.1098/Rsta.2010.0152  0.425
2010 Ananiadou S, Pyysalo S, Tsujii J, Kell DB. Event extraction for systems biology by text mining the literature. Trends in Biotechnology. 28: 381-90. PMID 20570001 DOI: 10.1016/J.Tibtech.2010.04.005  0.366
2010 Kemper B, Matsuzaki T, Matsuoka Y, Tsuruoka Y, Kitano H, Ananiadou S, Tsujii J. PathText: a text mining integrator for biological pathway visualizations. Bioinformatics (Oxford, England). 26: i374-81. PMID 20529930 DOI: 10.1093/Bioinformatics/Btq221  0.379
2010 Okazaki N, Ananiadou S, Tsujii J. Building a high-quality sense inventory for improved abbreviation disambiguation. Bioinformatics (Oxford, England). 26: 1246-53. PMID 20360059 DOI: 10.1093/Bioinformatics/Btq129  0.351
2010 Sasaki Y, McNaught J, Ananiadou S. The value of an in-domain lexicon in genomics QA. Journal of Bioinformatics and Computational Biology. 8: 147-61. PMID 20183880 DOI: 10.1142/S0219720010004513  0.376
2010 Wang X, Tsujii J, Ananiadou S. Disambiguating the species of biomedical named entities using natural language parsers. Bioinformatics (Oxford, England). 26: 661-7. PMID 20053840 DOI: 10.1093/Bioinformatics/Btq002  0.432
2009 Thompson P, Iqbal SA, McNaught J, Ananiadou S. Construction of an annotated corpus to support biomedical information extraction. Bmc Bioinformatics. 10: 349. PMID 19852798 DOI: 10.1186/1471-2105-10-349  0.454
2009 Kano Y, Baumgartner WA, McCrohon L, Ananiadou S, Cohen KB, Hunter L, Tsujii J. U-Compare: share and compare text mining tools with UIMA. Bioinformatics (Oxford, England). 25: 1997-8. PMID 19414535 DOI: 10.1093/Bioinformatics/Btp289  0.388
2009 Piao S, Tsuruoka Y, Ananiadou S. Sentiment analysis with knowledge resource and NLP tools The International Journal of Interdisciplinary Social Sciences: Annual Review. 4: 17-28. DOI: 10.18848/1833-1882/Cgp/V04I05/52902  0.407
2009 Ananiadou S, Rea B, Okazaki N, Procter R, Thomas J. Supporting systematic reviews using text mining Social Science Computer Review. 27: 509-523. DOI: 10.1177/0894439309332293  0.361
2008 Sasaki Y, Tsuruoka Y, McNaught J, Ananiadou S. How to make the most of NE dictionaries in statistical NER. Bmc Bioinformatics. 9: S5. PMID 19025691 DOI: 10.1186/1471-2105-9-S11-S5  0.369
2008 Tsuruoka Y, Tsujii J, Ananiadou S. FACTA: a text search engine for finding associated biomedical concepts. Bioinformatics (Oxford, England). 24: 2559-60. PMID 18772154 DOI: 10.1093/Bioinformatics/Btn469  0.406
2008 Meziane F, Athanasakis N, Ananiadou S. Generating Natural Language specifications from UML class diagrams Requirements Engineering. 13: 1-18. DOI: 10.1007/S00766-007-0054-0  0.376
2007 Tsuruoka Y, McNaught J, Tsujii J, Ananiadou S. Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinformatics (Oxford, England). 23: 2768-74. PMID 17698493 DOI: 10.1093/Bioinformatics/Btm393  0.368
2006 Okazaki N, Ananiadou S. Building an abbreviation dictionary using a term recognition approach. Bioinformatics (Oxford, England). 22: 3089-95. PMID 17050571 DOI: 10.1093/Bioinformatics/Btl534  0.455
2006 Ananiadou S, Kell DB, Tsujii J. Text mining and its potential applications in systems biology. Trends in Biotechnology. 24: 571-9. PMID 17045684 DOI: 10.1016/J.Tibtech.2006.10.002  0.433
2006 Ananiadou S, Fluck J. Proceedings of the second international symposium for semantic mining in biomedicine Ceur Workshop Proceedings. 177. DOI: 10.1186/1471-2105-7-S3-S1  0.509
2006 Mima H, Ananiadou S, Matsushima K. Terminology-based knowledge mining for new knowledge discovery Acm Transactions On Asian Language Information Processing. 5: 74-88. DOI: 10.1145/1131348.1131354  0.377
2006 Nenadić G, Ananiadou S. Mining semantically related terms from biomedical literature Acm Transactions On Asian Language Information Processing. 5: 22-43. DOI: 10.1145/1131348.1131351  0.433
2005 Spasic I, Ananiadou S, McNaught J, Kumar A. Text mining and ontologies in biomedicine: making sense of raw text. Briefings in Bioinformatics. 6: 239-51. PMID 16212772 DOI: 10.1093/Bib/6.3.239  0.472
2005 Spasic I, Ananiadou S, Tsujii J. MaSTerClass: a case-based reasoning system for the classification of biomedical terms. Bioinformatics (Oxford, England). 21: 2748-58. PMID 15728115 DOI: 10.1093/Bioinformatics/Bti338  0.435
2004 Spasi? I, Ananiadou S. Using automatically learnt verb selectional preferences for classification of biomedical terms. Journal of Biomedical Informatics. 37: 483-97. PMID 15542021 DOI: 10.1016/J.Jbi.2004.08.002  0.39
2004 Nenadic G, Spasic I, Ananiadou S. Mining term similarities from corpora Terminology. 10: 55-80. DOI: 10.1075/Term.10.1.04Nen  0.388
2004 Ananiadou S, Friedman C, Tsujii J. Introduction: Named entity recognition in biomedicine Journal of Biomedical Informatics. 37: 393-395. DOI: 10.1016/J.Jbi.2004.08.011  0.316
2003 Nenadic G, Spasic I, Ananiadou S. Terminology-driven mining of biomedical literature. Bioinformatics (Oxford, England). 19: 938-43. PMID 12761055 DOI: 10.1093/bioinformatics/btg105  0.303
2002 Nenadi? G, Mima H, Spasi? I, Ananiadou S, Tsujii J. Terminology-driven literature mining and knowledge acquisition in biomedicine. International Journal of Medical Informatics. 67: 33-48. PMID 12460630 DOI: 10.1016/S1386-5056(02)00055-2  0.419
2002 Ananiadou S. Spotting and Discovering Terms through Natural Language Processing Computational Linguistics. 28: 217-220. DOI: 10.1162/089120102760173661  0.316
2000 Ananiadou S, Albert S, Schuhmann D. Evaluation of Automatic Term Recognition of Nuclear Receptors from MEDLINE Genome Informatics. 11: 450-451. DOI: 10.11234/Gi1990.11.450  0.395
2000 Mima H, Ananiadou S. An application and evaluation of the C/NC value approach for the automatic term recognition of multi-word units in Japanese Terminology. 6: 175-194. DOI: 10.1075/Term.6.2.04Mim  0.39
2000 Frantzi K, Ananiadou S, Mima H. Automatic recognition of multi-word terms: The C-value/NC-value method International Journal On Digital Libraries. 3: 115-130. DOI: 10.1007/S007999900023  0.39
1989 Ananiadou S. On the definition of word Machine Translation. 4: 313-317. DOI: 10.1007/Bf00713706  0.334
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