Mark Yandell - Publications

Affiliations: 
Human Genetics University of Utah and School of Medicine, USA 

148 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Boer EF, Van Hollebeke HF, Maclary ET, Holt C, Yandell M, Shapiro MD. A ROR2 coding variant is associated with craniofacial variation in domestic pigeons. Current Biology : Cb. PMID 34551284 DOI: 10.1016/j.cub.2021.08.068  1
2021 Maclary ET, Phillips B, Wauer R, Boer EF, Bruders R, Gilvarry T, Holt C, Yandell M, Shapiro MD. Two Genomic Loci Control Three Eye Colors in the Domestic Pigeon (Columba livia). Molecular Biology and Evolution. PMID 34459920 DOI: 10.1093/molbev/msab260  1
2021 Lin E, Hahn AW, Nussenzveig RH, Wesolowski S, Sayegh N, Maughan BL, McFarland T, Rathi N, Sirohi D, Sonpavde G, Swami U, Kohli M, Rich T, Sartor O, Yandell M, et al. Identification of somatic gene signatures in circulating cfDNA associated with disease progression in metastatic prostate cancer by a novel machine learning platform. The Oncologist. PMID 34157173 DOI: 10.1002/onco.13869  1
2021 Fouks B, Brand P, Nguyen HN, Herman J, Camara F, Ence D, Hagen D, Hoff KJ, Nachweide S, Romoth L, Walden KK, Guigo R, Stanke M, Narzisi G, Yandell M, et al. The genomic basis of evolutionary differentiation among honey bees. Genome Research. PMID 33947700 DOI: 10.1101/gr.272310.120  1
2021 Tollis M, Ferris E, Campbell MS, Harris VK, Rupp SM, Harrison TM, Kiso WK, Schmitt DL, Garner MM, Athena Aktipis C, Maley CC, Boddy AM, Yandell M, Gregg C, Schiffman JD, et al. Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses. Molecular Biology and Evolution. PMID 33944920 DOI: 10.1093/molbev/msab127  1
2021 Musfee FI, Agopian AJ, Goldmuntz E, Hakonarson H, Morrow BE, Taylor DM, Tristani-Firouzi M, Watkins WS, Yandell M, Mitchell LE. Common Variation in Cytoskeletal Genes is Associated with Conotruncal Heart Defects. Genes. 12. PMID 33925651 DOI: 10.3390/genes12050655  1
2020 Bogenschutz EL, Fox ZD, Farrell A, Wynn J, Moore B, Yu L, Aspelund G, Marth G, Yandell M, Shen Y, Chung WK, Kardon G. Deep whole-genome sequencing of multiple proband tissues and parental blood reveals the complex genetic etiology of congenital diaphragmatic hernias. Hgg Advances. 1. PMID 33263113 DOI: 10.1016/j.xhgg.2020.100008  1
2020 Shah RU, Mutharasan RK, Ahmad FS, Rosenblatt AG, Gay HC, Steinberg BA, Yandell M, Tristani-Firouzi M, Klewer J, Mukherjee R, Lloyd-Jones DM. Development of a Portable Tool to Identify Patients With Atrial Fibrillation Using Clinical Notes From the Electronic Medical Record. Circulation. Cardiovascular Quality and Outcomes. e006516. PMID 33079591 DOI: 10.1161/CIRCOUTCOMES.120.006516  1
2020 Crandall H, Kapusta A, Killpack J, Heyrend C, Nilsson K, Dickey M, Daly JA, Ampofo K, Pavia AT, Mulvey MA, Yandell M, Hulten KG, Blaschke AJ. Clinical and molecular epidemiology of invasive Staphylococcus aureus infection in Utah children; continued dominance of MSSA over MRSA. Plos One. 15: e0238991. PMID 32946486 DOI: 10.1371/Journal.Pone.0238991  1
2020 Bjørn-Yoshimoto WE, Ramiro IBL, Yandell M, McIntosh JM, Olivera BM, Ellgaard L, Safavi-Hemami H. Curses or Cures: A Review of the Numerous Benefits Versus the Biosecurity Concerns of Conotoxin Research. Biomedicines. 8. PMID 32708023 DOI: 10.3390/Biomedicines8080235  1
2020 Bruders R, Van Hollebeke H, Osborne EJ, Kronenberg Z, Maclary E, Yandell M, Shapiro MD. A copy number variant is associated with a spectrum of pigmentation patterns in the rock pigeon (Columba livia). Plos Genetics. 16: e1008274. PMID 32433666 DOI: 10.1371/Journal.Pgen.1008274  1
2020 Lu A, Watkins M, Li Q, Robinson SD, Concepcion GP, Yandell M, Weng Z, Olivera BM, Safavi-Hemami H, Fedosov AE. Transcriptomic profiling reveals extraordinary diversity of venom peptides in unexplored predatory gastropods of the genus Clavus. Genome Biology and Evolution. PMID 32333764 DOI: 10.1093/Gbe/Evaa083  1
2020 Ledet EM, Lilly MB, Sonpavde G, Lin E, Nussenzveig RH, Barata PC, Yandell M, Nagy RJ, Kiedrowski L, Agarwal N, Sartor O. Comprehensive Analysis of AR Alterations in Circulating Tumor DNA from Patients with Advanced Prostate Cancer. The Oncologist. 25: 327-333. PMID 32297439 DOI: 10.1634/Theoncologist.2019-0115  1
2020 Dong ZM, Lin E, Wechsler ME, Weller PF, Klion AD, Bochner BS, Delker DA, Hazel MW, Fairfax K, Khoury P, Akuthota P, Merkel PA, Dyer AM, Langford C, Specks U, ... ... Yandell M, et al. Pulmonary Eosinophilic Granulomatosis with Polyangiitis has IgG4 Plasma Cells and Immunoregulatory Features. The American Journal of Pathology. PMID 32251643 DOI: 10.1016/J.Ajpath.2020.03.005  1
2019 Ledet EM, Lilly MB, Sonpavde G, Lin E, Nussenzveig RH, Barata PC, Yandell M, Nagy RJ, Kiedrowski L, Agarwal N, Sartor O. Comprehensive Analysis of Alterations in Circulating Tumor DNA from Patients with Advanced Prostate Cancer. The Oncologist. PMID 31712304 DOI: 10.1634/theoncologist.2019-0115  1
2019 Watkins WS, Hernandez EJ, Wesolowski S, Bisgrove BW, Sunderland RT, Lin E, Lemmon G, Demarest BL, Miller TA, Bernstein D, Brueckner M, Chung WK, Gelb BD, Goldmuntz E, Newburger JW, ... ... Yandell M, et al. De novo and recessive forms of congenital heart disease have distinct genetic and phenotypic landscapes. Nature Communications. 10: 4722. PMID 31624253 DOI: 10.1038/S41467-019-12582-Y  1
2019 Berauer JP, Mezina AI, Okou DT, Sabo A, Muzny DM, Gibbs RA, Hegde MR, Chopra P, Cutler DJ, Perlmutter DH, Bull LN, Thompson RJ, Loomes KM, Spinner NB, Rajagopalan R, ... ... Yandell M, et al. Identification of PKD1L1 Gene Variants in Children with the Biliary Atresia Splenic Malformation Syndrome. Hepatology (Baltimore, Md.). PMID 30664273 DOI: 10.1002/Hep.30515  1
2018 Li Q, Watkins M, Robinson SD, Safavi-Hemami H, Yandell M. Discovery of Novel Conotoxin Candidates Using Machine Learning. Toxins. 10. PMID 30513724 DOI: 10.3390/Toxins10120503  1
2018 Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, ... ... Yandell M, et al. Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nature Genetics. PMID 30224652 DOI: 10.1038/S41588-018-0199-4  1
2018 Vickrey AI, Bruders R, Kronenberg Z, Mackey E, Bohlender RJ, Maclary ET, Maynez R, Osborne EJ, Johnson KP, Huff CD, Yandell M, Shapiro MD. Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon. Elife. 7. PMID 30014848 DOI: 10.7554/Elife.34803  1
2018 Peterson KA, Yoshigi M, Hazel MW, Delker DA, Lin E, Krishnamurthy C, Consiglio N, Robson J, Yandell M, Clayton F. RNA sequencing confirms similarities between PPI-responsive oesophageal eosinophilia and eosinophilic oesophagitis. Alimentary Pharmacology & Therapeutics. PMID 29863285 DOI: 10.1111/Apt.14825  1
2018 Liu MJ, Sugimoto K, Uygun S, Panchy N, Campbell MS, Yandell M, Howe GA, Shiu SH. Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato. The Plant Cell. PMID 29743197 DOI: 10.1105/Tpc.18.00194  1
2018 Majoros WH, Holt C, Campbell MS, Ware D, Yandell M, Reddy TE. Predicting Gene Structure Changes Resulting from Genetic Variants via Exon Definition Features. Bioinformatics (Oxford, England). PMID 29701825 DOI: 10.1093/Bioinformatics/Bty324  1
2018 Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, ... ... Yandell M, et al. Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nature Genetics. PMID 29674745 DOI: 10.1038/S41588-018-0075-2  1
2018 Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, Domyan E, Suh A, Warren WC, Yandell M, Gilbert MTP, Shapiro MD. Improved Genome Assembly and Annotation for the Rock Pigeon (). G3 (Bethesda, Md.). PMID 29519939 DOI: 10.1534/G3.117.300443  1
2018 Flygare S, Hernandez EJ, Phan L, Moore B, Li M, Fejes A, Hu H, Eilbeck K, Huff C, Jorde L, G Reese M, Yandell M. The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool. Bmc Bioinformatics. 19: 57. PMID 29463208 DOI: 10.1186/S12859-018-2056-Y  1
2018 Smith JJ, Timoshevskaya N, Ye C, Holt C, Keinath MC, Parker HJ, Cook ME, Hess JE, Narum SR, Lamanna F, Kaessmann H, Timoshevskiy VA, Waterbury CKM, Saraceno C, Wiedemann LM, ... ... Yandell M, et al. The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. Nature Genetics. PMID 29358652 DOI: 10.1038/S41588-017-0036-1  1
2018 Vickrey AI, Bruders R, Kronenberg Z, Mackey E, Bohlender RJ, Maclary ET, Maynez R, Osborne EJ, Johnson KP, Huff CD, Yandell M, Shapiro MD. Author response: Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon Elife. DOI: 10.7554/Elife.34803.037  1
2018 Havrilla JM, Pedersen BS, Layer RM, Hernandez EJ, Yandell M, Quinlan AR. Pathoscore: a tool for unbiased evaluation of variant pathogenicity scores F1000research. 7. DOI: 10.7490/F1000Research.1116098.1  0.01
2017 Moriwaki M, Moore B, Mosbruger T, Neklason DW, Yandell M, Jorde LB, Welt CK. POLR2C Mutations Are Associated With Primary Ovarian Insufficiency in Women. Journal of the Endocrine Society. 1: 162-173. PMID 29367954 DOI: 10.1210/Js.2016-1014  1
2017 Yu Y, Hu H, Bohlender RJ, Hu F, Chen JS, Holt C, Fowler J, Guthery SL, Scheet P, Hildebrandt MA, Yandell M, Huff CD. XPAT: a toolkit to conduct cross-platform association studies with heterogeneous sequencing datasets. Nucleic Acids Research. PMID 29294048 DOI: 10.1093/Nar/Gkx1280  1
2017 Al-Agha AE, Ahmed IA, Nuebel E, Moriwaki M, Moore B, Peacock KA, Mosbruger T, Neklason DW, Jorde LB, Yandell M, Welt CK. Primary Ovarian Insufficiency and Azospermia in Carriers of a Homozygous PSMC3IP Stop Gain Mutation. The Journal of Clinical Endocrinology and Metabolism. PMID 29240891 DOI: 10.1210/Jc.2017-01966  1
2017 Moriwaki M, Moore B, Mosbruger T, Neklason DW, Yandell M, Jorde LB, Welt CK. POLR2C Mutations Are Associated With Primary Ovarian Insufficiency in Women. Journal of the Endocrine Society. 1: 162-173. PMID 29057389 DOI: 10.1210/js.2016-1014  1
2017 Jin SC, Homsy J, Zaidi S, Lu Q, Morton S, DePalma SR, Zeng X, Qi H, Chang W, Sierant MC, Hung WC, Haider S, Zhang J, Knight J, Bjornson RD, ... ... Yandell M, et al. Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands. Nature Genetics. PMID 28991257 DOI: 10.1038/Ng.3970  1
2017 Schlaberg R, Ampofo K, Tardif KD, Stockmann C, Simmon KE, Hymas W, Flygare S, Kennedy B, Blaschke A, Eilbeck K, Yandell M, McCullers JA, Williams DJ, Edwards K, Arnold SR, et al. Human Bocavirus Capsid Messenger RNA Detection in Children With Pneumonia. The Journal of Infectious Diseases. 216: 688-696. PMID 28934425 DOI: 10.1093/Infdis/Jix352  1
2017 Li Q, Barghi N, Lu A, Fedosov AE, Bandyopadhyay PK, Lluisma AO, Concepcion GP, Yandell M, Olivera BM, Safavi-Hemami H. Divergence of the Venom Exogene Repertoire in Two Sister Species of Turriconus. Genome Biology and Evolution. 9: 2211-2225. PMID 28922871 DOI: 10.1093/Gbe/Evx157  1
2017 Eilbeck K, Quinlan A, Yandell M. Settling the score: variant prioritization and Mendelian disease. Nature Reviews. Genetics. PMID 28804138 DOI: 10.1038/Nrg.2017.52  1
2017 Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, ... ... Yandell M, et al. The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. G3 (Bethesda, Md.). PMID 28751502 DOI: 10.1534/G3.117.300078  1
2017 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Yandell M, et al. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 13: e1006802. PMID 28542203 DOI: 10.1371/journal.pgen.1006802  1
2017 Robinson SD, Li Q, Lu A, Bandyopadhyay PK, Yandell M, Olivera BM, Safavi-Hemami H. The Venom Repertoire of Conus gloriamaris (Chemnitz, 1777), the Glory of the Sea. Marine Drugs. 15. PMID 28531118 DOI: 10.3390/Md15050145  1
2017 Schlaberg R, Queen K, Simmon K, Tardif K, Stockmann C, Flygare S, Kennedy B, Voelkerding K, Bramley A, Zhang J, Eilbeck K, Yandell M, Jain S, Pavia AT, Tong S, et al. Viral Pathogen Detection by Metagenomics and Pan Viral Group PCR in Children with Pneumonia Lacking Identifiable Etiology. The Journal of Infectious Diseases. PMID 28368491 DOI: 10.1093/Infdis/Jix148  1
2017 Manuck TA, Watkins WS, Esplin MS, Biggio J, Bukowski R, Parry S, Zhan H, Huang H, Andrews W, Saade G, Sadovsky Y, Reddy UM, Ilekis J, Yandell M, Varner MW, et al. Pharmacogenomics of 17-alpha hydroxyprogesterone caproate for recurrent preterm birth: a case-control study. Bjog : An International Journal of Obstetrics and Gynaecology. PMID 28139890 DOI: 10.1111/1471-0528.14485  1
2017 Young EL, Pflieger L, Maese L, Fowler T, Garfield K, Samadder NJ, Johnson B, Mason CC, Moore B, Ryanearson S, Yandell M, Kohlmann W, Schiffman JD. Abstract 2706:KRT16germline mutation associated with familial syndrome of tylosis with esophageal cancer (TOC) Cancer Research. 77: 2706-2706. DOI: 10.1158/1538-7445.Am2017-2706  1
2017 Young EL, Maese L, Robinson R, Pflieger L, Moore B, Rynearson S, Fowler T, Tavtigian SV, Yandell M, Mason CC, Hawkins DS, Lupo PJ, Schiffman JD. Abstract 2704: Pathogenic mutations and variants of unknown significance (VUS) in cancer predisposition genes are associated with over 10% of pediatric rhabdomyosarcoma: a report from the Children’s Oncology Group Cancer Research. 77: 2704-2704. DOI: 10.1158/1538-7445.Am2017-2704  1
2016 Majoros WH, Campbell MS, Holt C, DeNardo E, Ware D, Allen AS, Yandell M, Reddy TE. High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE. Bioinformatics (Oxford, England). PMID 28011790 DOI: 10.1093/Bioinformatics/Btw799  1
2016 Cone KR, Kronenberg ZN, Yandell M, Elde NC. Emergence of a viral RNA polymerase variant during gene copy number amplification promotes rapid evolution of vaccinia virus. Journal of Virology. PMID 27928012 DOI: 10.1128/Jvi.01428-16  1
2016 Hu H, Coon H, Li M, Yandell M, Huff CD. VARPRISM: incorporating variant prioritization in tests of de novo mutation association. Genome Medicine. 8: 91. PMID 27562213 DOI: 10.1186/S13073-016-0341-9  1
2016 Safavi-Hemami H, Lu A, Li Q, Fedosov AE, Biggs J, Showers Corneli P, Seger J, Yandell M, Olivera BM. Venom Insulins of Cone Snails Diversify Rapidly and Track Prey Taxa. Molecular Biology and Evolution. PMID 27524826 DOI: 10.1093/Molbev/Msw174  1
2016 Campbell M, Oakeson KF, Yandell M, Halpert JR, Dearing D. The draft genome sequence and annotation of the desert woodrat Neotoma lepida. Genomics Data. 9: 58-9. PMID 27408812 DOI: 10.1016/J.Gdata.2016.06.008  1
2016 Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, ... ... Yandell M, et al. Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 700. PMID 27230688 DOI: 10.1038/Ng0616-700C  1
2016 Flygare S, Simmon K, Miller C, Qiao Y, Kennedy B, Di Sera T, Graf EH, Tardif KD, Kapusta A, Rynearson S, Stockmann C, Queen K, Tong S, Voelkerding KV, Blaschke A, ... ... Yandell M, et al. Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling. Genome Biology. 17: 111. PMID 27224977 DOI: 10.1186/S13059-016-0969-1  1
2016 Barber MF, Kronenberg Z, Yandell M, Elde NC. Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans. Plos Genetics. 12: e1006063. PMID 27203426 DOI: 10.1371/Journal.Pgen.1006063  1
2016 Domyan ET, Kronenberg Z, Infante CR, Vickrey AI, Stringham SA, Bruders R, Guernsey MW, Park S, Payne J, Beckstead RB, Kardon G, Menke DB, Yandell M, Shapiro MD. Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species. Elife. 5. PMID 26977633 DOI: 10.7554/Elife.12115  1
2016 Safavi-Hemami H, Li Q, Jackson RL, Song AS, Boomsma W, Bandyopadhyay PK, Gruber CW, Purcell AW, Yandell M, Olivera BM, Ellgaard L. Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides. Proceedings of the National Academy of Sciences of the United States of America. PMID 26957604 DOI: 10.1073/Pnas.1525790113  1
2016 Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, Berlin AM, Campbell MS, Barrell D, Martin KJ, Mulley JF, ... ... Yandell M, et al. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48: 427-37. PMID 26950095 DOI: 10.1038/Ng.3526  1
2016 Graf EH, Simmon KE, Tardif KD, Hymas W, Flygare S, Eilbeck K, Yandell M, Schlaberg R. Unbiased Detection of Respiratory Viruses Using RNA-seq-Based Metagenomics: A Systematic Comparison to A Commercial PCR Panel. Journal of Clinical Microbiology. PMID 26818672 DOI: 10.1128/Jcm.03060-15  1
2016 Domyan ET, Kronenberg Z, Infante CR, Vickrey AI, Stringham SA, Bruders R, Guernsey MW, Park S, Payne J, Beckstead RB, Kardon G, Menke DB, Yandell M, Shapiro MD. Author response: Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species Elife. DOI: 10.7554/Elife.12115.028  1
2015 Campbell MS, Yandell M. An Introduction to Genome Annotation. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 52: 4.1.1-4.1.17. PMID 26678385 DOI: 10.1002/0471250953.Bi0401S52  1
2015 Mason CC, Khorashad JS, Tantravahi SK, Kelley TW, Zabriskie MS, Yan D, Pomicter AD, Reynolds KR, Eiring AM, Kronenberg Z, Sherman RL, Tyner JW, Dalley BK, Dao KH, Yandell M, et al. Age-related mutations and chronic myelomonocytic leukemia. Leukemia. PMID 26648538 DOI: 10.1038/Leu.2015.337  1
2015 Kronenberg ZN, Osborne EJ, Cone KR, Kennedy BJ, Domyan ET, Shapiro MD, Elde NC, Yandell M. Wham: Identifying Structural Variants of Biological Consequence. Plos Computational Biology. 11: e1004572. PMID 26625158 DOI: 10.1371/Journal.Pcbi.1004572  1
2015 Boothby TC, Tenlen JR, Smith FW, Wang JR, Patanella KA, Osborne Nishimura E, Tintori SC, Li Q, Jones CD, Yandell M, Messina DN, Glasscock J, Goldstein B. Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598659 DOI: 10.1073/Pnas.1510461112  1
2015 Robinson SD, Li Q, Bandyopadhyay PK, Gajewiak J, Yandell M, Papenfuss AT, Purcell AW, Norton RS, Safavi-Hemami H. Hormone-like peptides in the venoms of marine cone snails. General and Comparative Endocrinology. PMID 26301480 DOI: 10.1016/J.Ygcen.2015.07.012  1
2015 Bowles NE, Jou CJ, Arrington CB, Kennedy BJ, Earl A, Matsunami N, Meyers LL, Etheridge SP, Saarel EV, Bleyl SB, Yost HJ, Yandell M, Leppert MF, Tristani-Firouzi M, Gruber PJ, et al. Exome analysis of a family with Wolff-Parkinson-White syndrome identifies a novel disease locus. American Journal of Medical Genetics. Part A. PMID 26284702 DOI: 10.1002/Ajmg.A.37297  1
2015 King SB, Stephansen AB, Yokoi Y, Yandell MA, Kunin A, Takayanagi T, Neumark DM. Electron accommodation dynamics in the DNA base thymine. The Journal of Chemical Physics. 143: 024312. PMID 26178110 DOI: 10.1063/1.4923343  1
2015 Nash D, Arrington CB, Kennedy BJ, Yandell M, Wu W, Zhang W, Ware S, Jorde LB, Gruber PJ, Yost HJ, Bowles NE, Bleyl SB. Shared Segment Analysis and Next-Generation Sequencing Implicates the Retinoic Acid Signaling Pathway in Total Anomalous Pulmonary Venous Return (TAPVR). Plos One. 10: e0131514. PMID 26121141 DOI: 10.1371/Journal.Pone.0131514  1
2015 Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, et al. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science (New York, N.Y.). 348: 1139-43. PMID 25977371 DOI: 10.1126/Science.Aaa4788  1
2015 Keefe AC, Lawson JA, Flygare SD, Fox ZD, Colasanto MP, Mathew SJ, Yandell M, Kardon G. Muscle stem cells contribute to myofibres in sedentary adult mice. Nature Communications. 6: 7087. PMID 25971691 DOI: 10.1038/Ncomms8087  1
2015 Safavi-Hemami H, Gajewiak J, Karanth S, Robinson SD, Ueberheide B, Douglass AD, Schlegel A, Imperial JS, Watkins M, Bandyopadhyay PK, Yandell M, Li Q, Purcell AW, Norton RS, Ellgaard L, et al. Specialized insulin is used for chemical warfare by fish-hunting cone snails. Proceedings of the National Academy of Sciences of the United States of America. 112: 1743-8. PMID 25605914 DOI: 10.1073/Pnas.1423857112  1
2015 Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, ... Yandell M, et al. Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. 167: 25-39. PMID 25384563 DOI: 10.1104/Pp.114.245027  1
2014 Galati DF, Bonney S, Kronenberg Z, Clarissa C, Yandell M, Elde NC, Jerka-Dziadosz M, Giddings TH, Frankel J, Pearson CG. DisAp-dependent striated fiber elongation is required to organize ciliary arrays. The Journal of Cell Biology. 207: 705-15. PMID 25533842 DOI: 10.1083/Jcb.201409123  1
2014 Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K, Weichselgartner T, Kemena C, Stökl J, Schultner E, Wurm Y, Smith CD, Yandell M, Heinze J, Gadau J, et al. Transposable element islands facilitate adaptation to novel environments in an invasive species. Nature Communications. 5: 5495. PMID 25510865 DOI: 10.1038/Ncomms6495  1
2014 Campbell MS, Holt C, Moore B, Yandell M. Genome Annotation and Curation Using MAKER and MAKER-P. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 4.11.1-4.11.39. PMID 25501943 DOI: 10.1002/0471250953.Bi0411S48  1
2014 King SB, Yandell MA, Stephansen AB, Neumark DM. Time-resolved radiation chemistry: dynamics of electron attachment to uracil following UV excitation of iodide-uracil complexes. The Journal of Chemical Physics. 141: 224310. PMID 25494752 DOI: 10.1063/1.4903197  1
2014 Darlington TM, Pimentel R, Smith K, Bakian AV, Jerominski L, Cardon J, Camp NJ, Callor WB, Grey T, Singleton M, Yandell M, Renshaw PF, Yurgelun-Todd DA, Gray D, Coon H. Identifying rare variants for genetic risk through a combined pedigree and phenotype approach: application to suicide and asthma. Translational Psychiatry. 4: e471. PMID 25335167 DOI: 10.1038/Tp.2014.111  1
2014 Murphy MM, Keefe AC, Lawson JA, Flygare SD, Yandell M, Kardon G. Transiently active Wnt/β-catenin signaling is not required but must be silenced for stem cell function during muscle regeneration. Stem Cell Reports. 3: 475-88. PMID 25241745 DOI: 10.1016/J.Stemcr.2014.06.019  1
2014 Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, ... ... Yandell M, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679  1
2014 Kumar P P, Emechebe U, Smith R, Franklin S, Moore B, Yandell M, Lessnick SL, Moon AM. Coordinated control of senescence by lncRNA and a novel T-box3 co-repressor complex. Elife. 3. PMID 24876127 DOI: 10.7554/Elife.02805  1
2014 Hu H, Roach JC, Coon H, Guthery SL, Voelkerding KV, Margraf RL, Durtschi JD, Tavtigian SV, Shankaracharya, Wu W, Scheet P, Wang S, Xing J, Glusman G, Hubley R, ... ... Yandell M, et al. A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data. Nature Biotechnology. 32: 663-9. PMID 24837662 DOI: 10.1038/Nbt.2895  1
2014 Yandell MA, King SB, Neumark DM. Decay dynamics of nascent acetonitrile and nitromethane dipole-bound anions produced by intracluster charge-transfer. The Journal of Chemical Physics. 140: 184317. PMID 24832280 DOI: 10.1063/1.4875021  1
2014 Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs KL, Yandell M, Gundlach H, Mayer KF, Schwartz DC, Town CD. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. Bmc Genomics. 15: 312. PMID 24767513 DOI: 10.1186/1471-2164-15-312  1
2014 Kennedy B, Kronenberg Z, Hu H, Moore B, Flygare S, Reese MG, Jorde LB, Yandell M, Huff C. Using VAAST to Identify Disease-Associated Variants in Next-Generation Sequencing Data. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 81: 6.14.1-6.14.25. PMID 24763993 DOI: 10.1002/0471142905.Hg0614S81  1
2014 Singleton MV, Guthery SL, Voelkerding KV, Chen K, Kennedy B, Margraf RL, Durtschi J, Eilbeck K, Reese MG, Jorde LB, Huff CD, Yandell M. Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families. American Journal of Human Genetics. 94: 599-610. PMID 24702956 DOI: 10.1016/J.Ajhg.2014.03.010  1
2014 Kumar P P, Franklin S, Emechebe U, Hu H, Moore B, Lehman C, Yandell M, Moon AM. TBX3 regulates splicing in vivo: a novel molecular mechanism for Ulnar-mammary syndrome. Plos Genetics. 10: e1004247. PMID 24675841 DOI: 10.1371/Journal.Pgen.1004247  1
2014 Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, et al. Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics. 196: 891-909. PMID 24653211 DOI: 10.1534/Genetics.113.159996  1
2014 Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, ... ... Yandell M, et al. Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biology. 15: R59. PMID 24647006 DOI: 10.1186/Gb-2014-15-3-R59  1
2014 Manuck TA, Watkins WS, Moore B, Esplin MS, Varner MW, Jackson GM, Yandell M, Jorde L. Pharmacogenomics of 17-alpha hydroxyprogesterone caproate for recurrent preterm birth prevention. American Journal of Obstetrics and Gynecology. 210: 321.e1-321.e21. PMID 24594138 DOI: 10.1016/J.Ajog.2014.01.013  1
2014 Domyan ET, Guernsey MW, Kronenberg Z, Krishnan S, Boissy RE, Vickrey AI, Rodgers C, Cassidy P, Leachman SA, Fondon JW, Yandell M, Shapiro MD. Epistatic and combinatorial effects of pigmentary gene mutations in the domestic pigeon. Current Biology : Cb. 24: 459-64. PMID 24508169 DOI: 10.1016/J.Cub.2014.01.020  1
2014 Safavi-Hemami H, Hu H, Gorasia DG, Bandyopadhyay PK, Veith PD, Young ND, Reynolds EC, Yandell M, Olivera BM, Purcell AW. Combined proteomic and transcriptomic interrogation of the venom gland of Conus geographus uncovers novel components and functional compartmentalization. Molecular & Cellular Proteomics : McP. 13: 938-53. PMID 24478445 DOI: 10.1074/Mcp.M113.031351  1
2014 Chen K, Wu W, Mathew D, Zhang Y, Browne SK, Rosen LB, McManus MP, Pulsipher MA, Yandell M, Bohnsack JF, Jorde LB, Notarangelo LD, Walter JE. Autoimmunity due to RAG deficiency and estimated disease incidence in RAG1/2 mutations. The Journal of Allergy and Clinical Immunology. 133: 880-2.e10. PMID 24472623 DOI: 10.1016/J.Jaci.2013.11.038  1
2014 Chapin A, Hu H, Rynearson SG, Hollien J, Yandell M, Metzstein MM. In vivo determination of direct targets of the nonsense-mediated decay pathway in Drosophila. G3 (Bethesda, Md.). 4: 485-96. PMID 24429422 DOI: 10.1534/G3.113.009357  1
2014 Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, ... Yandell M, et al. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology. 164: 513-24. PMID 24306534 DOI: 10.1104/Pp.113.230144  1
2014 P PK, Emechebe U, Smith R, Franklin S, Moore B, Yandell M, Lessnick SL, Moon AM. Author response: Coordinated control of senescence by lncRNA and a novel T-box3 co-repressor complex Elife. DOI: 10.7554/Elife.02805.035  1
2014 Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, ... ... Yandell M, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110) Proceedings of the National Academy of Sciences of the United States of America. 111: 3194. DOI: 10.1073/Pnas.1324133111  1
2013 Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, ... ... Yandell M, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America. 110: 20645-50. PMID 24297902 DOI: 10.1073/Pnas.1314475110  1
2013 Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, ... ... Yandell M, et al. The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proceedings of the National Academy of Sciences of the United States of America. 110: 20651-6. PMID 24297900 DOI: 10.1073/Pnas.1314702110  1
2013 King SB, Yandell MA, Neumark DM. Time-resolved photoelectron imaging of the iodide-thymine and iodide-uracil binary cluster systems. Faraday Discussions. 163: 59-72; discussion 11. PMID 24020196 DOI: 10.1039/C3Fd20158A  1
2013 Ul-Hasan S, Burgess DM, Gajewiak J, Li Q, Hu H, Yandell M, Olivera BM, Bandyopadhyay PK. Characterization of the peptidylglycine α-amidating monooxygenase (PAM) from the venom ducts of neogastropods, Conus bullatus and Conus geographus. Toxicon : Official Journal of the International Society On Toxinology. 74: 215-24. PMID 23994590 DOI: 10.1016/J.Toxicon.2013.08.054  1
2013 Hu H, Huff CD, Moore B, Flygare S, Reese MG, Yandell M. VAAST 2.0: improved variant classification and disease-gene identification using a conservation-controlled amino acid substitution matrix. Genetic Epidemiology. 37: 622-34. PMID 23836555 DOI: 10.1002/Gepi.21743  1
2013 Flygare S, Campbell M, Ross RM, Moore B, Yandell M. ImagePlane: an automated image analysis pipeline for high-throughput screens using the planarian Schmidtea mediterranea. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 583-92. PMID 23822514 DOI: 10.1089/Cmb.2013.0025  1
2013 Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, ... ... Yandell M, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41  1
2013 Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay L, Bourque G, Yandell M, Feschotte C. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. Plos Genetics. 9: e1003470. PMID 23637635 DOI: 10.1371/Journal.Pgen.1003470  1
2013 Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, ... ... Yandell M, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027  1
2013 Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, et al. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nature Genetics. 45: 415-21, 421e1-2. PMID 23435085 DOI: 10.1038/Ng.2568  1
2013 Shapiro MD, Kronenberg Z, Li C, Domyan ET, Pan H, Campbell M, Tan H, Huff CD, Hu H, Vickrey AI, Nielsen SC, Stringham SA, Hu H, Willerslev E, Gilbert MT, ... Yandell M, et al. Genomic diversity and evolution of the head crest in the rock pigeon. Science (New York, N.Y.). 339: 1063-7. PMID 23371554 DOI: 10.1126/Science.1230422  1
2013 Yandell MA, King SB, Neumark DM. Time-resolved radiation chemistry: photoelectron imaging of transient negative ions of nucleobases. Journal of the American Chemical Society. 135: 2128-31. PMID 23350789 DOI: 10.1021/Ja312414Y  1
2012 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Yandell M, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/Journal.Pgen.1003064  1
2012 Hu H, Bandyopadhyay PK, Olivera BM, Yandell M. Elucidation of the molecular envenomation strategy of the cone snail Conus geographus through transcriptome sequencing of its venom duct. Bmc Genomics. 13: 284. PMID 22742208 DOI: 10.1186/1471-2164-13-284  1
2012 Yandell M, Ence D. A beginner's guide to eukaryotic genome annotation. Nature Reviews. Genetics. 13: 329-42. PMID 22510764 DOI: 10.1038/Nrg3174  1
2012 Young RM, Yandell MA, King SB, Neumark DM. Thermal effects on energetics and dynamics in water cluster anions (H2O)n(-). The Journal of Chemical Physics. 136: 094304. PMID 22401437 DOI: 10.1063/1.3689439  1
2012 Yandell MA, Young RM, King SB, Neumark DM. Effects of excitation energy on the autodetachment lifetimes of small iodide-doped ROH clusters (R═H-, CH3-, CH3CH(2)-). The Journal of Physical Chemistry. A. 116: 2750-7. PMID 22043852 DOI: 10.1021/Jp208016W  1
2012 Lyon G, Jiang T, Wijk RV, Wang W, Bodily P, Xing J, Tian L, Robison R, Clement M, Yang L, Zhang P, Liu Y, Moore B, Solinge Wv, Yandell M, et al. Whole exome sequencing reveals the genetic basis of a case of idiopathic hemolytic anemia and suggests candidate rare variants for ADHD in a Utah pedigree F1000research. 3. DOI: 10.7490/F1000Research.1089758.1  1
2012 Rope AF, Wang K, Evjenth R, Xing J, Johnston JJ, Swensen JJ, Johnson WE, Moore B, Huff CD, Bird LM, Carey JC, Opitz JM, Stevens CA, Schank C, Jiang T, ... ... Yandell M, et al. Using VAAST and massively parallel sequencing to characterize a novel disorder caused by protein N-terminal acetyltransferase deficiency F1000research. 3. DOI: 10.7490/F1000Research.1089750.1  1
2012 Young RM, Azar RJ, Yandell MA, King SB, Head-Gordon M, Neumark DM. Iodide solvation in tetrahydrofuran clusters: I -(THF) n (1 ≤ n ≤ 30) Molecular Physics. 110: 1787-1799. DOI: 10.1080/00268976.2012.679637  1
2011 Holt C, Yandell M. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. Bmc Bioinformatics. 12: 491. PMID 22192575 DOI: 10.1186/1471-2105-12-491  1
2011 Lyon GJ, Jiang T, Van Wijk R, Wang W, Bodily PM, Xing J, Tian L, Robison RJ, Clement M, Lin Y, Zhang P, Liu Y, Moore B, Glessner JT, Elia J, ... ... Yandell M, et al. Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications. Discovery Medicine. 12: 41-55. PMID 21794208  1
2011 Yandell M, Huff C, Hu H, Singleton M, Moore B, Xing J, Jorde LB, Reese MG. A probabilistic disease-gene finder for personal genomes. Genome Research. 21: 1529-42. PMID 21700766 DOI: 10.1101/Gr.123158.111  1
2011 Rope AF, Wang K, Evjenth R, Xing J, Johnston JJ, Swensen JJ, Johnson WE, Moore B, Huff CD, Bird LM, Carey JC, Opitz JM, Stevens CA, Jiang T, Schank C, ... ... Yandell M, et al. Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. American Journal of Human Genetics. 89: 28-43. PMID 21700266 DOI: 10.1016/J.Ajhg.2011.05.017  1
2011 Young RM, Yandell MA, Neumark DM. Dynamics of electron solvation in I(-)(CH3OH)n clusters (4 ≤ n ≤ 11). The Journal of Chemical Physics. 134: 124311. PMID 21456666 DOI: 10.1063/1.3563720  1
2011 Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, ... ... Yandell MD, et al. The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. Plos Genetics. 7: e1002007. PMID 21347285 DOI: 10.1371/Journal.Pgen.1002007  1
2011 Moore B, Hu H, Singleton M, De La Vega FM, Reese MG, Yandell M. Global analysis of disease-related DNA sequence variation in 10 healthy individuals: implications for whole genome-based clinical diagnostics. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 13: 210-7. PMID 21325948 DOI: 10.1097/Gim.0B013E31820Ed321  1
2011 Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, et al. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proceedings of the National Academy of Sciences of the United States of America. 108: 5667-72. PMID 21282651 DOI: 10.1073/Pnas.1007901108  1
2011 Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, ... ... Yandell M, et al. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences of the United States of America. 108: 5673-8. PMID 21282631 DOI: 10.1073/Pnas.1008617108  1
2011 Hu H, Bandyopadhyay PK, Olivera BM, Yandell M. Characterization of the Conus bullatus genome and its venom-duct transcriptome. Bmc Genomics. 12: 60. PMID 21266071 DOI: 10.1186/1471-2164-12-60  1
2010 Young RM, Yandell MA, Niemeyer M, Neumark DM. Photoelectron imaging of tetrahydrofuran cluster anions (THF)(n) (-) (1≤n≤100). The Journal of Chemical Physics. 133: 154312. PMID 20969391 DOI: 10.1063/1.3489686  1
2010 Reese MG, Moore B, Batchelor C, Salas F, Cunningham F, Marth GT, Stein L, Flicek P, Yandell M, Eilbeck K. A standard variation file format for human genome sequences. Genome Biology. 11: R88. PMID 20796305 DOI: 10.1186/Gb-2010-11-8-R88  1
2010 Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, ... ... Yandell M, et al. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biology. 11: R73. PMID 20626842 DOI: 10.1186/Gb-2010-11-7-R73  1
2010 Kovach A, Wegrzyn JL, Parra G, Holt C, Bruening GE, Loopstra CA, Hartigan J, Yandell M, Langley CH, Korf I, Neale DB. The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. Bmc Genomics. 11: 420. PMID 20609256 DOI: 10.1186/1471-2164-11-420  1
2009 Eilbeck K, Moore B, Holt C, Yandell M. Quantitative measures for the management and comparison of annotated genomes. Bmc Bioinformatics. 10: 67. PMID 19236712 DOI: 10.1186/1471-2105-10-67  1
2008 Yandell M, Moore B, Salas F, Mungall C, MacBride A, White C, Reese MG. Genome-wide analysis of human disease alleles reveals that their locations are correlated in paralogous proteins. Plos Computational Biology. 4: e1000218. PMID 18989397 DOI: 10.1371/Journal.Pcbi.1000218  1
2008 Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Research. 18: 188-96. PMID 18025269 DOI: 10.1101/Gr.6743907  1
2007 Smith CD, Edgar RC, Yandell MD, Smith DR, Celniker SE, Myers EW, Karpen GH. Improved repeat identification and masking in Dipterans. Gene. 389: 1-9. PMID 17137733 DOI: 10.1016/J.Gene.2006.09.011  1
2006 Yandell M, Mungall CJ, Smith C, Prochnik S, Kaminker J, Hartzell G, Lewis S, Rubin GM. Large-scale trends in the evolution of gene structures within 11 animal genomes. Plos Computational Biology. 2: e15. PMID 16518452 DOI: 10.1371/Journal.Pcbi.0020015  1
2005 Eilbeck K, Lewis SE, Mungall CJ, Yandell M, Stein L, Durbin R, Ashburner M. The Sequence Ontology: a tool for the unification of genome annotations. Genome Biology. 6: R44. PMID 15892872 DOI: 10.1186/Gb-2005-6-5-R44  1
2005 Yandell M, Bailey AM, Misra S, Shu S, Wiel C, Evans-Holm M, Celniker SE, Rubin GM. A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome. Proceedings of the National Academy of Sciences of the United States of America. 102: 1566-71. PMID 15668397 DOI: 10.1073/Pnas.0409421102  1
2003 Majoros WH, Subramanian GM, Yandell MD. Identification of key concepts in biomedical literature using a modified Markov heuristic. Bioinformatics (Oxford, England). 19: 402-7. PMID 12584127 DOI: 10.1093/Bioinformatics/Btg010  1
2002 Zdobnov EM, von Mering C, Letunic I, Torrents D, Suyama M, Copley RR, Christophides GK, Thomasova D, Holt RA, Subramanian GM, Mueller HM, Dimopoulos G, Law JH, Wells MA, Birney E, ... ... Yandell M, et al. Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science (New York, N.Y.). 298: 149-59. PMID 12364792 DOI: 10.1126/Science.1077061  1
2002 Holt RA, Subramanian GM, Halpern A, Sutton GG, Charlab R, Nusskern DR, Wincker P, Clark AG, Ribeiro JM, Wides R, Salzberg SL, Loftus B, Yandell M, Majoros WH, Rusch DB, et al. The genome sequence of the malaria mosquito Anopheles gambiae. Science (New York, N.Y.). 298: 129-49. PMID 12364791 DOI: 10.1126/Science.1076181  1
2002 Yandell MD, Majoros WH. Genomics and natural language processing. Nature Reviews. Genetics. 3: 601-10. PMID 12154383 DOI: 10.1038/nrg861  1
2002 Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, Sutton GG, Nadeau J, Salzberg SL, Holt RA, Kodira CD, Lu F, Chen L, ... ... Yandell M, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (New York, N.Y.). 296: 1661-71. PMID 12040188 DOI: 10.1126/Science.1069193  1
2002 Kerlavage A, Bonazzi V, di Tommaso M, Lawrence C, Li P, Mayberry F, Mural R, Nodell M, Yandell M, Zhang J, Thomas P. The Celera Discovery System. Nucleic Acids Research. 30: 129-36. PMID 11752274 DOI: 10.1093/Nar/30.1.129  1
2001 Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, et al. The sequence of the human genome. Science (New York, N.Y.). 291: 1304-51. PMID 11181995 DOI: 10.1126/Science.1058040  1
2000 Jin S, Martinek S, Joo WS, Wortman JR, Mirkovic N, Sali A, Yandell MD, Pavletich NP, Young MW, Levine AJ. Identification and characterization of a p53 homologue in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 97: 7301-6. PMID 10860994 DOI: 10.1073/Pnas.97.13.7301  1
2000 Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, et al. Comparative genomics of the eukaryotes. Science (New York, N.Y.). 287: 2204-15. PMID 10731134 DOI: 10.1126/Science.287.5461.2204  1
2000 Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, ... ... Yandell MD, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185  1
1999 Marth GT, Korf I, Yandell MD, Yeh RT, Gu Z, Zakeri H, Stitziel NO, Hillier L, Kwok PY, Gish WR. A general approach to single-nucleotide polymorphism discovery. Nature Genetics. 23: 452-6. PMID 10581034 DOI: 10.1038/70570  1
1999 Suzuki Y, Yandell MD, Roy PJ, Krishna S, Savage-Dunn C, Ross RM, Padgett RW, Wood WB. A BMP homolog acts as a dose-dependent regulator of body size and male tail patterning in Caenorhabditis elegans. Development (Cambridge, England). 126: 241-50. PMID 9847238  1
1994 Yandell MD, Edgar LG, Wood WB. Trimethylpsoralen induces small deletion mutations in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 91: 1381-5. PMID 7906415  1
1988 Ghiggino KP, Scully AD, Bigger SW, Yandell MD. Photophysics of polymer-bound 2-(2′-hydroxyphenyl)-2H-benzotriazole photostabilizers Journal of Polymer Science. Part C, Polymer Letters. 26: 505-510.  1
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