Veronica Hinman - Publications

Affiliations: 
Biological Sciences Carnegie Mellon University, Pittsburgh, PA 

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Telmer CA, Karimi K, Chess MM, Agalakov S, Arshinoff BI, Lotay V, Wang DZ, Chu S, Pells TJ, Vize PD, Hinman VF, Ettensohn CA. Echinobase: a resource to support the echinoderm research community. Genetics. PMID 38262680 DOI: 10.1093/genetics/iyae002  0.396
2022 Foley S, Vlasova A, Marcet-Houben M, Gabaldón T, Hinman VF. Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla. Genomics. 114: 110431. PMID 35835427 DOI: 10.1016/j.ygeno.2022.110431  0.393
2022 Meyer A, Hinman V. The arm of the starfish: The far-reaching applications of Patiria miniata as a model system in evolutionary, developmental, and regenerative biology. Current Topics in Developmental Biology. 147: 523-543. PMID 35337461 DOI: 10.1016/bs.ctdb.2022.01.006  0.438
2021 Arshinoff BI, Cary GA, Karimi K, Foley S, Agalakov S, Delgado F, Lotay VS, Ku CJ, Pells TJ, Beatman TR, Kim E, Cameron RA, Vize PD, Telmer CA, Croce JC, ... ... Hinman VF, et al. Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms. Nucleic Acids Research. PMID 34791383 DOI: 10.1093/nar/gkab1005  0.763
2021 Beatman TR, Buckley KM, Cary GA, Hinman VF, Ettensohn CA. A nomenclature for echinoderm genes. Database : the Journal of Biological Databases and Curation. 2021. PMID 34386815 DOI: 10.1093/database/baab052  0.777
2021 Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Sedeño Cacciatore Á, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire BG, Weisz D, Omer AD, ... ... Hinman V, et al. 3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science (New York, N.Y.). 372: 984-989. PMID 34045355 DOI: 10.1126/science.abe2218  0.726
2021 Hatleberg WL, Hinman VF. Modularity and hierarchy in biological systems: Using gene regulatory networks to understand evolutionary change. Current Topics in Developmental Biology. 141: 39-73. PMID 33602494 DOI: 10.1016/bs.ctdb.2020.11.004  0.349
2020 Cary GA, McCauley BS, Zueva O, Pattinato J, Longabaugh W, Hinman VF. Systematic comparison of sea urchin and sea star developmental gene regulatory networks explains how novelty is incorporated in early development. Nature Communications. 11: 6235. PMID 33277483 DOI: 10.1038/s41467-020-20023-4  0.796
2019 Gildor T, Cary GA, Lalzar M, Hinman VF, Ben-Tabou de-Leon S. Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance. Scientific Reports. 9: 16201. PMID 31700051 DOI: 10.1038/S41598-019-52577-9  0.795
2019 Cary GA, Cameron RA, Hinman VF. Genomic resources for the study of echinoderm development and evolution. Methods in Cell Biology. 151: 65-88. PMID 30948032 DOI: 10.1016/Bs.Mcb.2018.11.019  0.762
2019 Cary GA, Wolff A, Zueva O, Pattinato J, Hinman VF. Analysis of sea star larval regeneration reveals conserved processes of whole-body regeneration across the metazoa. Bmc Biology. 17: 16. PMID 30795750 DOI: 10.1186/S12915-019-0633-9  0.739
2018 Cary GA, Cameron RA, Hinman VF. EchinoBase: Tools for Echinoderm Genome Analyses. Methods in Molecular Biology (Clifton, N.J.). 1757: 349-369. PMID 29761464 DOI: 10.1007/978-1-4939-7737-6_12  0.743
2018 Hinman VF, Burke RD. Embryonic neurogenesis in echinoderms. Wiley Interdisciplinary Reviews. Developmental Biology. PMID 29470839 DOI: 10.1002/wdev.316  0.443
2017 Gildor T, Hinman V, Ben-Tabou-De-Leon S. Regulatory heterochronies and loose temporal scaling between sea star and sea urchin regulatory circuits. The International Journal of Developmental Biology. 61: 347-356. PMID 28621432 DOI: 10.1387/Ijdb.160331Sb  0.492
2017 Cary GA, Cheatle Jarvela AM, Francolini RD, Hinman VF. Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development. Proceedings of the National Academy of Sciences of the United States of America. 114: 5854-5861. PMID 28584099 DOI: 10.1073/Pnas.1610611114  0.782
2017 Thompson JR, Erkenbrack EM, Hinman VF, McCauley BS, Petsios E, Bottjer DJ. Paleogenomics of echinoids reveals an ancient origin for the double-negative specification of micromeres in sea urchins. Proceedings of the National Academy of Sciences of the United States of America. 114: 5870-5877. PMID 28584090 DOI: 10.1073/Pnas.1610603114  0.795
2017 Hinman V, Cary G. The evolution of gene regulation. Elife. 6. PMID 28498101 DOI: 10.7554/Elife.27291  0.766
2017 Cary GA, Hinman VF. Echinoderm development and evolution in the post-genomic era. Developmental Biology. PMID 28185788 DOI: 10.1016/J.Ydbio.2017.02.003  0.799
2016 Jarvela AM, Yankura KA, Hinman VF. A gene regulatory network for apical organ neurogenesis and its spatial control in sea star embryos. Development (Cambridge, England). PMID 27707794 DOI: 10.1242/Dev.134999  0.779
2015 Rebeiz M, Patel NH, Hinman VF. Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development. Annual Review of Genomics and Human Genetics. PMID 26079281 DOI: 10.1146/Annurev-Genom-091212-153423  0.392
2015 Cheatle Jarvela AM, Hinman VF. Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks. Evodevo. 6: 3. PMID 25685316 DOI: 10.1186/2041-9139-6-3  0.428
2015 McCauley BS, Akyar E, Saad HR, Hinman VF. Dose-dependent nuclear β-catenin response segregates endomesoderm along the sea star primary axis. Development (Cambridge, England). 142: 207-17. PMID 25516976 DOI: 10.1242/dev.113043  0.745
2014 Cheatle Jarvela AM, Hinman V. A method for microinjection of Patiria miniata zygotes. Journal of Visualized Experiments : Jove. e51913. PMID 25226153 DOI: 10.3791/51913  0.5
2014 Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF. Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. Molecular Biology and Evolution. 31: 2672-88. PMID 25016582 DOI: 10.1093/Molbev/Msu213  0.306
2014 Hinman VF, Cheatle Jarvela AM. Developmental gene regulatory network evolution: insights from comparative studies in echinoderms. Genesis (New York, N.Y. : 2000). 52: 193-207. PMID 24549884 DOI: 10.1002/dvg.22757  0.522
2013 McCauley BS, Akyar E, Filliger L, Hinman VF. Expression of wnt and frizzled genes during early sea star development. Gene Expression Patterns : Gep. 13: 437-44. PMID 23899422 DOI: 10.1016/J.Gep.2013.07.007  0.764
2013 Yankura KA, Koechlein CS, Cryan AF, Cheatle A, Hinman VF. Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning. Proceedings of the National Academy of Sciences of the United States of America. 110: 8591-6. PMID 23650356 DOI: 10.1073/Pnas.1220903110  0.803
2012 McCauley BS, Wright EP, Exner C, Kitazawa C, Hinman VF. Development of an embryonic skeletogenic mesenchyme lineage in a sea cucumber reveals the trajectory of change for the evolution of novel structures in echinoderms. Evodevo. 3: 17. PMID 22877149 DOI: 10.1186/2041-9139-3-17  0.801
2011 Kadri S, Hinman VF, Benos PV. RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star. Plos One. 6: e29217. PMID 22216218 DOI: 10.1371/Journal.Pone.0029217  0.564
2010 Yankura KA, Martik ML, Jennings CK, Hinman VF. Uncoupling of complex regulatory patterning during evolution of larval development in echinoderms. Bmc Biology. 8: 143. PMID 21118544 DOI: 10.1186/1741-7007-8-143  0.792
2010 McCauley BS, Weideman EP, Hinman VF. A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos. Developmental Biology. 340: 200-8. PMID 19941847 DOI: 10.1016/J.Ydbio.2009.11.020  0.813
2009 Hinman VF, Yankura KA, McCauley BS. Evolution of gene regulatory network architectures: examples of subcircuit conservation and plasticity between classes of echinoderms. Biochimica Et Biophysica Acta. 1789: 326-32. PMID 19284985 DOI: 10.1016/J.Bbagrm.2009.01.004  0.782
2009 Kadri S, Hinman V, Benos PV. HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models. Bmc Bioinformatics. 10: S35. PMID 19208136 DOI: 10.1186/1471-2105-10-S1-S35  0.507
2007 Hinman VF, Davidson EH. Evolutionary plasticity of developmental gene regulatory network architecture. Proceedings of the National Academy of Sciences of the United States of America. 104: 19404-9. PMID 18042699 DOI: 10.1073/Pnas.0709994104  0.628
2007 Hinman VF, Nguyen A, Davidson EH. Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins. Developmental Biology. 312: 584-95. PMID 17956756 DOI: 10.1016/J.Ydbio.2007.09.006  0.64
2006 Larroux C, Fahey B, Liubicich D, Hinman VF, Gauthier M, Gongora M, Green K, Wörheide G, Leys SP, Degnan BM. Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity. Evolution & Development. 8: 150-73. PMID 16509894 DOI: 10.1111/j.1525-142X.2006.00086.x  0.426
2005 Otim O, Hinman VF, Davidson EH. Expression of AmHNF6, a sea star orthologue of a transcription factor with multiple distinct roles in sea urchin development. Gene Expression Patterns : Gep. 5: 381-6. PMID 15661644 DOI: 10.1016/J.Modgep.2004.09.009  0.582
2003 Hinman VF, Nguyen AT, Cameron RA, Davidson EH. Developmental gene regulatory network architecture across 500 million years of echinoderm evolution. Proceedings of the National Academy of Sciences of the United States of America. 100: 13356-61. PMID 14595011 DOI: 10.1073/Pnas.2235868100  0.64
2003 Hinman VF, Nguyen AT, Davidson EH. Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa. Mechanisms of Development. 120: 1165-76. PMID 14568105 DOI: 10.1016/J.Mod.2003.08.002  0.531
2003 Hinman VF, O'Brien EK, Richards GS, Degnan BM. Expression of anterior Hox genes during larval development of the gastropod Haliotis asinina. Evolution & Development. 5: 508-21. PMID 12950629 DOI: 10.1046/J.1525-142X.2003.03056.X  0.366
2003 Hinman VF, Davidson EH. Expression of AmKrox, a starfish ortholog of a sea urchin transcription factor essential for endomesodermal specification. Gene Expression Patterns : Gep. 3: 423-6. PMID 12915305 DOI: 10.1016/S1567-133X(03)00083-8  0.535
2003 Hinman VF, Davidson EH. Expression of a gene encoding a Gata transcription factor during embryogenesis of the starfish Asterina miniata. Gene Expression Patterns : Gep. 3: 419-22. PMID 12915304 DOI: 10.1016/S1567-133X(03)00082-6  0.553
2002 Jackson D, Leys SP, Hinman VF, Woods R, Lavin MF, Degnan BM. Ecological regulation of development: induction of marine invertebrate metamorphosis. The International Journal of Developmental Biology. 46: 679-86. PMID 12141457  0.601
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, et al. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Developmental Biology. 246: 162-90. PMID 12027441 DOI: 10.1006/Dbio.2002.0635  0.737
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, et al. A genomic regulatory network for development. Science (New York, N.Y.). 295: 1669-78. PMID 11872831 DOI: 10.1126/Science.1069883  0.752
2000 Giusti AF, Hinman VF, Degnan SM, Degnan BM, Morse DE. Expression of a Scr/Hox5 gene in the larval central nervous system of the gastropod Haliotis, a non-segmented spiralian lophotrochozoan. Evolution & Development. 2: 294-302. PMID 11252558 DOI: 10.1046/J.1525-142X.2000.00071.X  0.389
2000 Hinman VF, Becker E, Degnan BM. Neuroectodermal and endodermal expression of the ascidian Cdx gene is separated by metamorphosis. Development Genes and Evolution. 210: 212-6. PMID 11180824 DOI: 10.1007/s004270050306  0.344
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