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Xuebing Wu, Ph.D. - Publications

Affiliations: 
2010-2014 Koch Institute Massachusetts Institute of Technology, Cambridge, MA, United States 
 2014-2018 David Bartel Lab Whitehead Institute for Biomedical Research (MIT) 
 2018- Medicine; Systems Biology Columbia University, New York, NY 
Area:
RNA
Website:
https://xuebingwu.github.io/
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhang Y, Zhang W, Zhao J, Ito T, Jin J, Aparicio AO, Zhou J, Guichard V, Fang Y, Que J, Urban JF, Hanna JH, Ghosh S, Wu X, Ding L, et al. mA RNA modification regulates innate lymphoid cell responses in a lineage-specific manner. Nature Immunology. PMID 37400674 DOI: 10.1038/s41590-023-01548-4  0.302
2023 Kesner JS, Chen Z, Shi P, Aparicio AO, Murphy MR, Guo Y, Trehan A, Lipponen JE, Recinos Y, Myeku N, Wu X. Noncoding translation mitigation. Nature. PMID 37046090 DOI: 10.1038/s41586-023-05946-4  0.687
2023 Shi P, Murphy MR, Aparicio AO, Kesner JS, Fang Z, Chen Z, Trehan A, Guo Y, Wu X. Collateral activity of the CRISPR/RfxCas13d system in human cells. Communications Biology. 6: 334. PMID 36977923 DOI: 10.1038/s42003-023-04708-2  0.678
2018 Zhang C, Konermann S, Brideau NJ, Lotfy P, Wu X, Novick SJ, Strutzenberg T, Griffin PR, Hsu PD, Lyumkis D. Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d. Cell. 175: 212-223.e17. PMID 30241607 DOI: 10.1016/J.Cell.2018.09.001  0.389
2018 Tycko J, Barrera LA, Huston NC, Friedland AE, Wu X, Gootenberg JS, Abudayyeh OO, Myer VE, Wilson CJ, Hsu PD. Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells. Nature Communications. 9: 2962. PMID 30054474 DOI: 10.1038/S41467-018-05391-2  0.426
2018 Jiang W, Wei Y, Long Y, Owen A, Wang B, Wu X, Luo S, Dang Y, Ma DK. A genetic program mediates cold-warming response and promotes stress-induced phenoptosis in . Elife. 7. PMID 29664006 DOI: 10.7554/Elife.35037  0.304
2018 Liu XS, Wu H, Krzisch M, Wu X, Graef J, Muffat J, Hnisz D, Li CH, Yuan B, Xu C, Li Y, Vershkov D, Cacace A, Young RA, Jaenisch R. Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene. Cell. PMID 29456084 DOI: 10.1016/J.Cell.2018.01.012  0.325
2018 Chiu AC, Suzuki HI, Wu X, Mahat DB, Kriz AJ, Sharp PA. Transcriptional Pause Sites Delineate Stable Nucleosome-Associated Premature Polyadenylation Suppressed by U1 snRNP. Molecular Cell. PMID 29398447 DOI: 10.1016/J.Molcel.2018.01.006  0.631
2017 Wu X, Bartel DP. Widespread Influence of 3'-End Structures on Mammalian mRNA Processing and Stability. Cell. 169: 905-917.e11. PMID 28525757 DOI: 10.1016/J.Cell.2017.04.036  0.551
2017 Wu X, Bartel DP. kpLogo: positional k-mer analysis reveals hidden specificity in biological sequences. Nucleic Acids Research. PMID 28460012 DOI: 10.1093/Nar/Gkx323  0.536
2016 Liu XS, Wu H, Ji X, Stelzer Y, Wu X, Czauderna S, Shu J, Dadon D, Young RA, Jaenisch R. Editing DNA Methylation in the Mammalian Genome. Cell. 167: 233-247.e17. PMID 27662091 DOI: 10.1016/J.Cell.2016.08.056  0.35
2016 Zhang X, Chen MH, Wu X, Kodani A, Fan J, Doan R, Ozawa M, Ma J, Yoshida N, Reiter JF, Black DL, Kharchenko PV, Sharp PA, Walsh CA. Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex. Cell. 166: 1147-1162.e15. PMID 27565344 DOI: 10.1016/J.Cell.2016.07.025  0.563
2015 Ran FA, Cong L, Yan WX, Scott DA, Gootenberg JS, Kriz AJ, Zetsche B, Shalem O, Wu X, Makarova KS, Koonin EV, Sharp PA, Zhang F. In vivo genome editing using Staphylococcus aureus Cas9. Nature. 520: 186-91. PMID 25830891 DOI: 10.1038/Nature14299  0.642
2014 Wu X, Kriz AJ, Sharp PA. Target specificity of the CRISPR-Cas9 system. Quantitative Biology. 2: 59-70. PMID 25722925 DOI: 10.1007/s40484-014-0030-x  0.589
2014 Chen S, Xue Y, Wu X, Le C, Bhutkar A, Bell EL, Zhang F, Langer R, Sharp PA. Global microRNA depletion suppresses tumor angiogenesis. Genes & Development. 28: 1054-67. PMID 24788094 DOI: 10.1101/Gad.239681.114  0.58
2014 Wu X, Scott DA, Kriz AJ, Chiu AC, Hsu PD, Dadon DB, Cheng AW, Trevino AE, Konermann S, Chen S, Jaenisch R, Zhang F, Sharp PA. Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells. Nature Biotechnology. 32: 670-6. PMID 24752079 DOI: 10.1038/Nbt.2889  0.659
2013 Chen Y, Wu X, Jiang R. Integrating human omics data to prioritize candidate genes. Bmc Medical Genomics. 6: 57. PMID 24344781 DOI: 10.1186/1755-8794-6-57  0.446
2013 Wu X, Sharp PA. Divergent transcription: a driving force for new gene origination? Cell. 155: 990-6. PMID 24267885 DOI: 10.1016/J.Cell.2013.10.048  0.618
2013 Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O, Cradick TJ, Marraffini LA, Bao G, Zhang F. DNA targeting specificity of RNA-guided Cas9 nucleases. Nature Biotechnology. 31: 827-32. PMID 23873081 DOI: 10.1038/Nbt.2647  0.498
2013 Almada AE, Wu X, Kriz AJ, Burge CB, Sharp PA. Promoter directionality is controlled by U1 snRNP and polyadenylation signals. Nature. 499: 360-3. PMID 23792564 DOI: 10.1038/Nature12349  0.717
2013 Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F. Multiplex genome engineering using CRISPR/Cas systems. Science (New York, N.Y.). 339: 819-23. PMID 23287718 DOI: 10.1126/Science.1231143  0.479
2009 Tang W, Wu X, Jiang R, Li Y. Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy. Plos Genetics. 5: e1000464. PMID 19412524 DOI: 10.1371/Journal.Pgen.1000464  0.454
2009 Jiang R, Tang W, Wu X, Fu W. A random forest approach to the detection of epistatic interactions in case-control studies. Bmc Bioinformatics. 10: S65. PMID 19208169 DOI: 10.1186/1471-2105-10-S1-S65  0.443
2009 Wu X, Liu Q, Jiang R. Align human interactome with phenome to identify causative genes and networks underlying disease families. Bioinformatics (Oxford, England). 25: 98-104. PMID 19010805 DOI: 10.1093/Bioinformatics/Btn593  0.438
2008 Wu X, Jiang R, Zhang MQ, Li S. Network-based global inference of human disease genes. Molecular Systems Biology. 4: 189. PMID 18463613 DOI: 10.1038/Msb.2008.27  0.464
2008 Wu X, Sun Z, Jiang R. Logic motif of combinatorial control in transcriptional networks Nature Precedings. 1-1. DOI: 10.1038/Npre.2008.2227.1  0.399
1998 Deloukas P, Schuler GD, Gyapay G, Beasley EM, Soderlund C, Rodriguez-Tomé P, Hui L, Matise TC, McKusick KB, Beckmann JS, Bentolila S, Bihoreau M, Birren BB, Browne J, Butler A, ... ... Wu X, et al. A physical map of 30,000 human genes. Science (New York, N.Y.). 282: 744-6. PMID 9784132 DOI: 10.1126/Science.282.5389.744  0.334
1996 Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, Rice K, White RE, Rodriguez-Tomé P, Aggarwal A, Bajorek E, Bentolila S, Birren BB, Butler A, Castle AB, Chiannilkulchai N, ... ... Wu X, et al. A gene map of the human genome. Science (New York, N.Y.). 274: 540-6. PMID 8849440 DOI: 10.1126/Science.274.5287.540  0.352
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