Pietro Liò - Publications

Computer Laboratory University of Cambridge, Cambridge, England, United Kingdom 

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Narula P, Azad S, Lio P. Bayesian Melding Approach to Estimate the Reproduction Number for Tuberculosis Transmission in Indian States and Union Territories. Asia-Pacific Journal of Public Health / Asia-Pacific Academic Consortium For Public Health. 27: 723-32. PMID 26182939 DOI: 10.1177/1010539515595068  1
2015 Ascolani G, Occhipinti A, Liò P. Modelling circulating tumour cells for personalised survival prediction in metastatic breast cancer. Plos Computational Biology. 11: e1004199. PMID 25978366 DOI: 10.1371/journal.pcbi.1004199  1
2015 Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, et al. The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Research. 43: W589-98. PMID 25897122 DOI: 10.1093/nar/gkv350  1
2015 Narula P, Sihota P, Azad S, Lio P. Analyzing seasonality of tuberculosis across Indian states and union territories. Journal of Epidemiology and Global Health. PMID 25795541 DOI: 10.1016/j.jegh.2015.02.004  1
2015 Korhonen A, Guo Y, Baker S, Yetisgen-Yildiz M, Stenius U, Narita M, Liò P. Improving literature-based discovery with advanced text mining Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8623: 89-98. DOI: 10.1007/978-3-319-24462-4_8  1
2014 Taffi M, Paoletti N, Angione C, Pucciarelli S, Marini M, Liò P. Bioremediation in marine ecosystems: a computational study combining ecological modeling and flux balance analysis. Frontiers in Genetics. 5: 319. PMID 25309577 DOI: 10.3389/fgene.2014.00319  1
2014 Ascolani G, Liò P. Modeling TGF-β in early stages of cancer tissue dynamics. Plos One. 9: e88533. PMID 24586338 DOI: 10.1371/journal.pone.0088533  1
2013 Castiglione F, Tieri P, De Graaf A, Franceschi C, Liò P, Van Ommen B, Mazzà C, Tuchel A, Bernaschi M, Samson C, Colombo T, Castellani GC, Capri M, Garagnani P, Salvioli S, et al. The onset of type 2 diabetes: proposal for a multi-scale model. Jmir Research Protocols. 2: e44. PMID 24176906 DOI: 10.2196/resprot.2854  1
2013 Carapezza G, Umeton R, Costanza J, Angione C, Stracquadanio G, Papini A, Lió P, Nicosia G. Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis. Acs Synthetic Biology. 2: 274-88. PMID 23654280 DOI: 10.1021/sb300102k  1
2013 Liò P, Lucia B, Nguyen VA, Kitchovitch S. Risk perception, heuristics and epidemic spread Modeling the Interplay Between Human Behavior and the Spread of Infectious Diseases. 139-152. DOI: 10.1007/978-1-4614-5474-8_9  1
2012 Haider S, Cordeddu L, Robinson E, Movassagh M, Siggens L, Vujic A, Choy MK, Goddard M, Lio P, Foo R. The landscape of DNA repeat elements in human heart failure. Genome Biology. 13: R90. PMID 23034148 DOI: 10.1186/gb-2012-13-10-r90  1
2012 Liò P, Angelini C, De Feis I, Nguyen VA. Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species. Plos One. 7: e42489. PMID 22984403 DOI: 10.1371/journal.pone.0042489  1
2012 Nazri A, Lio P. Investigating meta-approaches for reconstructing gene networks in a mammalian cellular context. Plos One. 7: e28713. PMID 22253694 DOI: 10.1371/journal.pone.0028713  1
2012 Umeton R, Stracquadanio G, Papini A, Costanza J, Liò P, Nicosia G. Identification of sensitive enzymes in the photosynthetic carbon metabolism. Advances in Experimental Medicine and Biology. 736: 441-59. PMID 22161345 DOI: 10.1007/978-1-4419-7210-1_26  1
2011 Movassagh M, Choy MK, Knowles DA, Cordeddu L, Haider S, Down T, Siggens L, Vujic A, Simeoni I, Penkett C, Goddard M, Lio P, Bennett MR, Foo RS. Distinct epigenomic features in end-stage failing human hearts. Circulation. 124: 2411-22. PMID 22025602 DOI: 10.1161/CIRCULATIONAHA.111.040071  1
2011 Kitchovitch S, Liò P. Community structure in social networks: applications for epidemiological modelling. Plos One. 6: e22220. PMID 21789238 DOI: 10.1371/journal.pone.0022220  0.32
2011 Giampieri E, Remondini D, de Oliveira L, Castellani G, Lió P. Stochastic analysis of a miRNA-protein toggle switch. Molecular Biosystems. 7: 2796-803. PMID 21717010 DOI: 10.1039/c1mb05086a  1
2011 Hebenstreit D, Gu M, Haider S, Turner DJ, Liò P, Teichmann SA. EpiChIP: gene-by-gene quantification of epigenetic modification levels. Nucleic Acids Research. 39: e27. PMID 21131282 DOI: 10.1093/nar/gkq1226  1
2011 Van Der Wath RC, Van Der Wath EC, Lió P. Parallel hematopoietic stem cell division rate estimation using an agent-based model on the grid Proceedings - 19th International Euromicro Conference On Parallel, Distributed, and Network-Based Processing, Pdp 2011. 311-317. DOI: 10.1109/PDP.2011.65  1
2010 Cheng TM, Lu YE, Guest PC, Rahmoune H, Harris LW, Wang L, Ma D, Stelzhammer V, Umrania Y, Wayland MT, Lió P, Bahn S. Identification of targeted analyte clusters for studies of schizophrenia. Molecular & Cellular Proteomics : McP. 9: 510-22. PMID 20007949 DOI: 10.1074/mcp.M900372-MCP200  1
2010 Pappas V, Verma DC, Lio P. Morphogenesis in computer networks 33rd Ieee Sarnoff Symposium 2010, Conference Proceedings. DOI: 10.1109/SARNOF.2010.5469776  1
2010 Lio P, Verma D. Guest Editorial: Biologically inspired networking Ieee Network. 24: 4. DOI: 10.1109/MNET.2010.5464220  1
2010 Stracquadanio G, Umeton R, Papini A, Lio P, Nicosia G. Analysis and optimization of C3 photosynthetic carbon metabolism 10th Ieee International Conference On Bioinformatics and Bioengineering 2010, Bibe 2010. 44-51. DOI: 10.1109/BIBE.2010.17  1
2009 Schwarz E, Leweke FM, Bahn S, Liò P. Clinical bioinformatics for complex disorders: a schizophrenia case study. Bmc Bioinformatics. 10: S6. PMID 19828082 DOI: 10.1186/1471-2105-10-S12-S6  0.52
2009 Milanesi L, Romano P, Castellani G, Remondini D, Liò P. Trends in modeling Biomedical Complex Systems. Bmc Bioinformatics. 10: I1. PMID 19828068 DOI: 10.1186/1471-2105-10-S12-I1  1
2009 van der Wath RC, Wilson A, Laurenti E, Trumpp A, Liò P. Estimating dormant and active hematopoietic stem cell kinetics through extensive modeling of bromodeoxyuridine label-retaining cell dynamics. Plos One. 4: e6972. PMID 19771180 DOI: 10.1371/journal.pone.0006972  1
2009 Leung IX, Hui P, Liò P, Crowcroft J. Towards real-time community detection in large networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 066107. PMID 19658564  0.52
2009 Lu YE, Roberts S, Cheng TMK, Dunbar R, Lió P, Crowcroft J. On optimising personal network size to manage information flow International Conference On Information and Knowledge Management, Proceedings. 19-26. DOI: 10.1145/1651274.1651279  1
2009 Cheng TMK, Lu YE, Lió P. Identification of structurally important amino acids in proteins by graph-theoretic measures Proceedings of the Kdd-09 Workshop On Statistical and Relational Learning in Bioinformatics, Strebio '09. 7-11. DOI: 10.1145/1562090.1562092  1
2009 Lu YE, Roberts S, Lio P, Dunbar R, Crowcroft J. Size matters: Variation in personal network size, personality and effect on information transmission Proceedings - 12th Ieee International Conference On Computational Science and Engineering, Cse 2009. 4: 188-193. DOI: 10.1109/CSE.2009.179  1
2009 Lee U, Magistretti E, Gerla M, Bellavista P, Lió P, Lee KW. Bio-inspired multi-agent data harvesting in a proactive urban monitoring environment Ad Hoc Networks. 7: 725-741. DOI: 10.1016/j.adhoc.2008.03.009  1
2008 Brilli M, Mengoni A, Fondi M, Bazzicalupo M, Liò P, Fani R. Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network. Bmc Bioinformatics. 9: 551. PMID 19099604 DOI: 10.1186/1471-2105-9-551  0.52
2008 Wilson A, Laurenti E, Oser G, van der Wath RC, Blanco-Bose W, Jaworski M, Offner S, Dunant CF, Eshkind L, Bockamp E, Lió P, Macdonald HR, Trumpp A. Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair. Cell. 135: 1118-29. PMID 19062086 DOI: 10.1016/j.cell.2008.10.048  1
2008 Liò P, Bishop M. Modeling sequence evolution. Methods in Molecular Biology (Clifton, N.J.). 452: 255-85. PMID 18566769 DOI: 10.1007/978-1-60327-159-2_13  0.52
2008 Lu YE, Lió P, Hand S. On low dimensional random projections and similarity search International Conference On Information and Knowledge Management, Proceedings. 749-758. DOI: 10.1145/1458082.1458182  1
2008 Kershenbaum A, Pappas V, Lee KW, Lio P, Sadler B, Verma D. A biologically-inspired MANET architecture Proceedings of Spie - the International Society For Optical Engineering. 6981. DOI: 10.1117/12.783462  1
2008 Lu X, Wicker F, Lio P, Towsley D. Security estimation model with directional antennas Proceedings - Ieee Military Communications Conference Milcom. DOI: 10.1109/MILCOM.2008.4753607  1
2008 Lee U, Magistretti E, Gerla M, Bellavista P, Liò P, Lee KW. Bio-inspired multi-agent collaboration for urban monitoring applications Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5151: 204-216. DOI: 10.1007/978-3-540-92191-2_19  1
2008 Van Der Wath RC, Lio' P. A stochastic single cell based model of BrdU measured hematopoietic stem cell kinetics Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5307: 387-401. DOI: 10.1007/978-3-540-88562-7_26  0.52
2008 Van Der Wath RC, Liò P. A stochastic multi-agent model of stem cell proliferation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5191: 500-505. DOI: 10.1007/978-3-540-79992-4_65  1
2007 Bagnoli F, Liò P, Sguanci L. Risk perception in epidemic modeling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 061904. PMID 18233866  0.52
2007 Papetti C, Liò P, Rüber L, Patarnello T, Zardoya R. Antarctic fish mitochondrial genomes lack ND6 gene Journal of Molecular Evolution. 65: 519-528. PMID 17955154 DOI: 10.1007/s00239-007-9030-z  1
2007 Weston EM, Friday AE, Liò P. Biometric evidence that sexual selection has shaped the hominin face Plos One. 2. PMID 17684556 DOI: 10.1371/journal.pone.0000710  1
2007 Caretta-Cartozo C, De Los Rios P, Piazza F, Liò P. Bottleneck genes and community structure in the cell cycle network of S. pombe. Plos Computational Biology. 3: e103. PMID 17542643 DOI: 10.1371/journal.pcbi.0030103  0.52
2005 Lu YE, Hand S, Lió P. Keyword searching in hypercubic manifolds Proceedings - Fifth Ieee International Conference On Peer-to-Peer Computing, P2p 2005. 2005: 150-151. DOI: 10.1109/P2P.2005.18  1
2004 Rustici G, Mata J, Kivinen K, Lió P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bähler J. Periodic gene expression program of the fission yeast cell cycle. Nature Genetics. 36: 809-17. PMID 15195092 DOI: 10.1038/ng1377  1
2004 Tadesse MG, Vannucci M, Liò P. Identification of DNA regulatory motifs using Bayesian variable selection. Bioinformatics (Oxford, England). 20: 2553-61. PMID 15117754 DOI: 10.1093/bioinformatics/bth282  1
2004 Liò P, Goldman N. Phylogenomics and bioinformatics of SARS-CoV. Trends in Microbiology. 12: 106-11. PMID 15058277 DOI: 10.1016/j.tim.2004.01.005  1
2003 Liò P, Vannucci M. Investigating the evolution and structure of chemokine receptors. Gene. 317: 29-37. PMID 14604789 DOI: 10.1016/S0378-1119(03)00666-8  1
2002 Skaer N, Pistillo D, Gibert JM, Lio P, Wülbeck C, Simpson P. Gene duplication at the achaete-scute complex and morphological complexity of the peripheral nervous system in Diptera. Trends in Genetics : Tig. 18: 399-405. PMID 12142008 DOI: 10.1016/S0168-9525(02)02747-6  1
2002 Liò P, Goldman N. Modeling mitochondrial protein evolution using structural information. Journal of Molecular Evolution. 54: 519-29. PMID 11956690 DOI: 10.1007/s00239-001-0052-7  1
2001 Massingham T, Davies LJ, Liò P. Analysing gene function after duplication Bioessays. 23: 873-876. PMID 11598954 DOI: 10.1002/bies.1128  1
2001 Whelan S, Liò P, Goldman N. Molecular phylogenetics: state-of-the-art methods for looking into the past. Trends in Genetics : Tig. 17: 262-72. PMID 11335036 DOI: 10.1016/S0168-9525(01)02272-7  1
2000 Liò P, Vannucci M. Finding pathogenicity islands and gene transfer events in genome data Bioinformatics. 16: 932-940. PMID 11120683  1
2000 Lio P, Vannucci M. Wavelet change-point prediction of transmembrane proteins Bioinformatics. 16: 376-382. PMID 10869036  1
2000 Hagelberg E, Goldman N, Lio P, Whelan S, Schiefenhovel W, Clegg JB, Bowden DK. Evidence for mitochondrial DNA recombination in a human population of island Melanesia: Correction Proceedings of the Royal Society B: Biological Sciences. 267: 1595-1596.  1
1999 Liò P, Goldman N. Using protein structural information in evolutionary inference: transmembrane proteins. Molecular Biology and Evolution. 16: 1696-710. PMID 10605112  1
1999 Hagelberg E, Goldman N, Lió P, Whelan S, Schiefenhövel W, Clegg JB, Bowden DK. Evidence for mitochondrial DNA recombination in a human population of island Melanesia. Proceedings. Biological Sciences / the Royal Society. 266: 485-92. PMID 10189712 DOI: 10.1098/rspb.1999.0663  1
1998 Liò P, Goldman N. Models of molecular evolution and phylogeny. Genome Research. 8: 1233-44. PMID 9872979  0.72
1998 Liò P, Goldman N, Thorne JL, Jones3 DT. PASSML: combining evolutionary inference and protein secondary structure prediction. Bioinformatics (Oxford, England). 14: 726-33. PMID 9789098 DOI: 10.1093/bioinformatics/14.8.726  1
1998 Liò P, Goldman N. Review: Models of molecular evolution and phylogeny Genome Research. 8: 1233-1244. DOI: 10.1101/gr.8.12.1233  1
1995 Vicario F, Vendramin GG, Rossi P, Liò P, Giannini R. Allozyme, chloroplast DNA and RAPD markers for determining genetic relationships between Abies alba and the relic population of Abies nebrodensis Theoretical and Applied Genetics. 90: 1012-1018. DOI: 10.1007/BF00222915  1
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