Jason H. Moore - Publications

Program in Human Genetics, Bronxville, NY, United States 

276 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Moore JH, Olson RS, Schmitt P, Chen Y, Manduchi E. How Computational Experiments Can Improve Our Understanding of the Genetic Architecture of Common Human Diseases. Artificial Life. 1-15. PMID 32027528 DOI: 10.1162/artl_a_00308  0.8
2020 Ritchie MD, Moore JH, Kim JH. Translational Bioinformatics: Biobanks in the Precision Medicine Era. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 25: 743-747. PMID 31797645  0.92
2020 Tong J, Duan R, Li R, Scheuemie MJ, Moore JH, Chen Y. Robust-ODAL: Learning from heterogeneous health systems without sharing patient-level data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 25: 695-706. PMID 31797639  0.8
2019 Sipper M, Moore JH. OMNIREP: Originating Meaning by Coevolving Encodings and Representations. Memetic Computing. 11: 251-261. PMID 31885724 DOI: 10.1007/s12293-019-00285-2  0.64
2019 Yao X, Cong S, Yan J, Risacher SL, Saykin AJ, Moore JH, Shen L. Regional Imaging Genetic Enrichment Analysis. Bioinformatics (Oxford, England). PMID 31860065 DOI: 10.1093/bioinformatics/btz948  0.68
2019 Sipper M, Fu W, Ahuja K, Moore JH. Correction to: Investigating the parameter space of evolutionary algorithms. Biodata Mining. 12: 22. PMID 31827622 DOI: 10.1186/s13040-019-0210-3  0.64
2019 Duan R, Boland MR, Liu Z, Liu Y, Chang HH, Xu H, Chu H, Schmid CH, Forrest CB, Holmes JH, Schuemie MJ, Berlin JA, Moore JH, Chen Y. Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. Journal of the American Medical Informatics Association : Jamia. PMID 31816040 DOI: 10.1093/jamia/ocz199  0.8
2019 Yao X, Cong S, Yan J, Risacher SL, Saykin AJ, Moore JH, Shen L. Mining Regional Imaging Genetic Associations via Voxel-wise Enrichment Analysis. ... Ieee-Embs International Conference On Biomedical and Health Informatics. Ieee-Embs International Conference On Biomedical and Health Informatics. 2019. PMID 31742256 DOI: 10.1109/BHI.2019.8834450  0.68
2019 Penrod NM, Lynch S, Thomas S, Seshadri N, Moore JH. Prevalence and Characterization of Yoga Mentions in the Electronic Health Record. Journal of the American Board of Family Medicine : Jabfm. 32: 790-800. PMID 31704747 DOI: 10.3122/jabfm.2019.06.190115  1
2019 Tong J, Huang J, Chubak J, Wang X, Moore JH, Hubbard RA, Chen Y. An augmented estimation procedure for EHR-based association studies accounting for differential misclassification. Journal of the American Medical Informatics Association : Jamia. PMID 31617899 DOI: 10.1093/jamia/ocz180  0.8
2019 Liu Y, Huang J, Urbanowicz RJ, Chen K, Manduchi E, Greene CS, Moore JH, Scheet P, Chen Y. Embracing study heterogeneity for finding genetic interactions in large-scale research consortia. Genetic Epidemiology. PMID 31583758 DOI: 10.1002/gepi.22262  1
2019 Li R, Duan R, Kember RL, Rader DJ, Damrauer SM, Moore JH, Chen Y. A regression framework to uncover pleiotropy in large-scale electronic health record data. Journal of the American Medical Informatics Association : Jamia. 26: 1083-1090. PMID 31529123 DOI: 10.1093/jamia/ocz084  0.8
2019 Duan R, Cao M, Ning Y, Zhu M, Zhang B, McDermott A, Chu H, Zhou X, Moore JH, Ibrahim JG, Scharfstein DO, Chen Y. Global identifiability of latent class models with applications to diagnostic test accuracy studies: a Gröbner basis approach. Biometrics. PMID 31444807 DOI: 10.1111/biom.13133  0.8
2019 Lo Y, Lynch SF, Urbanowicz RJ, Olson RS, Ritter AZ, Whitehouse CR, O'Connor M, Keim SK, McDonald M, Moore JH, Bowles KH. Using Machine Learning on Home Health Care Assessments to Predict Fall Risk. Studies in Health Technology and Informatics. 264: 684-688. PMID 31438011 DOI: 10.3233/SHTI190310  1
2019 Huang J, Zhang X, Tong J, Du J, Duan R, Yang L, Moore JH, Tao C, Chen Y. Comparing drug safety of hepatitis C therapies using post-market data. Bmc Medical Informatics and Decision Making. 19: 147. PMID 31391106 DOI: 10.1186/s12911-019-0860-6  0.8
2019 Li R, Chen Y, Moore JH. Integration of genetic and clinical information to improve imputation of data missing from electronic health records. Journal of the American Medical Informatics Association : Jamia. PMID 31329892 DOI: 10.1093/jamia/ocz041  0.8
2019 Manduchi E, Orzechowski PR, Ritchie MD, Moore JH. Exploration of a diversity of computational and statistical measures of association for genome-wide genetic studies. Biodata Mining. 12: 14. PMID 31320928 DOI: 10.1186/s13040-019-0201-4  0.92
2019 Orzechowski P, Boryczko K, Moore JH. Scalable biclustering - the future of big data exploration? Gigascience. 8. PMID 31251324 DOI: 10.1093/gigascience/giz078  0.76
2019 Fernández-Santiago R, Martín-Flores N, Antonelli F, Cerquera C, Moreno V, Bandres-Ciga S, Manduchi E, Tolosa E, Singleton AB, Moore JH, Martí MJ, Ezquerra M, Malagelada C. Pathway single nucleotide polymorphisms interact to modulate the age at onset of Parkinson's disease. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 31234232 DOI: 10.1002/mds.27770  0.64
2019 Le TT, Fu W, Moore JH. Scaling tree-based automated machine learning to biomedical big data with a feature set selector. Bioinformatics (Oxford, England). PMID 31165141 DOI: 10.1093/bioinformatics/btz470  0.4
2019 Manduchi E, Hemerich D, van Setten J, Tragante V, Harakalova M, Pei J, Williams SM, van der Harst P, Asselbergs FW, Moore JH. A comparison of two workflows for regulome and transcriptome-based prioritization of genetic variants associated with myocardial mass. Genetic Epidemiology. PMID 31145509 DOI: 10.1002/gepi.22215  0.92
2019 Penrod NM, Moore JH. Why mind-body medicine is poised to set a new standard for clinical research. Journal of Clinical Epidemiology. PMID 31112802 DOI: 10.1016/j.jclinepi.2019.05.001  1
2019 Moore JH, Olson RS, Chen Y, Sipper M. Automated discovery of test statistics using genetic programming. Genetic Programming and Evolvable Machines. 20: 127-137. PMID 31105467  0.8
2019 Lussier YA, Butte AJ, Li H, Chen R, Moore JH. Translational informatics of population health: How large biomolecular and clinical datasets unite. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 455-459. PMID 30864347  0.56
2019 Berghout J, Lussier YA, Vitali F, Bulyk ML, Kann MG, Moore JH. Workshop during the Pacific Symposium of Biocomputing, Jan 3-7, 2019: Reading between the genes: interpreting non-coding DNA in high-throughput. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 444-448. PMID 30864345  0.56
2019 Duan R, Boland MR, Moore JH, Chen Y. ODAL: A one-shot distributed algorithm to perform logistic regressions on electronic health records data from multiple clinical sites. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 24: 30-41. PMID 30864308  0.8
2019 Moore JH, Mackay TFC, Williams SM. Testing the assumptions of parametric linear models: the need for biological data mining in disciplines such as human genetics. Biodata Mining. 12: 6. PMID 30792817 DOI: 10.1186/s13040-019-0194-z  0.92
2019 Moore JH, Boland MR, Camara PG, Chervitz H, Gonzalez G, Himes BE, Kim D, Mowery DL, Ritchie MD, Shen L, Urbanowicz RJ, Holmes JH. Preparing next-generation scientists for biomedical big data: artificial intelligence approaches. Personalized Medicine. PMID 30760118 DOI: 10.2217/pme-2018-0145  1
2019 Hemerich D, Pei J, Harakalova M, van Setten J, Boymans S, Boukens BJ, Efimov IR, Michels M, van der Velden J, Vink A, Cheng C, van der Harst P, Moore JH, Mokry M, Tragante V, et al. Integrative Functional Annotation of 52 Genetic Loci Influencing Myocardial Mass Identifies Candidate Regulatory Variants and Target Genes. Circulation. Genomic and Precision Medicine. PMID 30681347 DOI: 10.1161/CIRCGEN.118.002328  0.72
2019 Orzechowski P, Moore JH. EBIC: an open source software for high-dimensional and big data analyses. Bioinformatics (Oxford, England). PMID 30649199 DOI: 10.1093/bioinformatics/btz027  0.76
2018 Tragante V, Hemerich D, Alshabeeb M, Brænne I, Lempiäinen H, Patel RS, den Ruijter HM, Barnes MR, Moore JH, Schunkert H, Erdmann J, Asselbergs FW. Druggability of Coronary Artery Disease Risk Loci. Circulation. Genomic and Precision Medicine. 11: e001977. PMID 30354342 DOI: 10.1161/CIRCGEN.117.001977  0.72
2018 Sipper M, Urbanowicz RJ, Moore JH. To know the objective is not (necessarily) to know the objective function. Biodata Mining. 11: 21. PMID 30323861 DOI: 10.1186/s13040-018-0182-8  1
2018 Piette ER, Moore JH. Identification of epistatic interactions between the human RNA demethylases FTO and ALKBH5 with gene set enrichment analysis informed by differential methylation. Bmc Proceedings. 12: 59. PMID 30275901 DOI: 10.1186/s12919-018-0122-0  1
2018 Le TT, Urbanowicz RJ, Moore JH, McKinney BA. Statistical Inference Relief (STIR) feature selection. Bioinformatics (Oxford, England). PMID 30239600 DOI: 10.1093/bioinformatics/bty788  1
2018 Urbanowicz RJ, Meeker M, Cava W, Olson RS, Moore JH. Relief-Based Feature Selection: Introduction and Review. Journal of Biomedical Informatics. PMID 30031057 DOI: 10.1016/j.jbi.2018.07.014  1
2018 Urbanowicz RJ, Olson RS, Schmitt P, Meeker M, Moore JH. Benchmarking Relief-Based Feature Selection Methods for Bioinformatics Data Mining. Journal of Biomedical Informatics. PMID 30030120 DOI: 10.1016/j.jbi.2018.07.015  1
2018 Orzechowski P, Panszczyk A, Huang X, Moore JH. runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. Bioinformatics (Oxford, England). PMID 29939213 DOI: 10.1093/bioinformatics/bty512  0.76
2018 Manduchi E, Williams SM, Chesi A, Johnson ME, Wells AD, Grant SFA, Moore JH. Leveraging epigenomics and contactomics data to investigate SNP pairs in GWAS. Human Genetics. PMID 29797095 DOI: 10.1007/s00439-018-1893-0  0.92
2018 Chernikova DA, Madan JC, Housman ML, Zain-Ul-Abideen M, Lundgren SN, Morrison HG, Sogin ML, Williams SM, Moore JH, Karagas MR, Hoen AG. The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth. Pediatric Research. PMID 29795209 DOI: 10.1038/s41390-018-0022-z  0.92
2018 Orzechowski P, Sipper M, Huang X, Moore JH. EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery. Bioinformatics (Oxford, England). PMID 29790909 DOI: 10.1093/bioinformatics/bty401  0.76
2018 Cava W, Helmuth T, Spector L, Moore JH. A probabilistic and multi-objective analysis of lexicase selection and ε-lexicase selection. Evolutionary Computation. 1-28. PMID 29746157 DOI: 10.1162/evco_a_00224  0.6
2018 Causey JL, Ashby C, Walker K, Wang ZP, Yang M, Guan Y, Moore JH, Huang X. DNAp: A Pipeline for DNA-seq Data Analysis. Scientific Reports. 8: 6793. PMID 29717215 DOI: 10.1038/s41598-018-25022-6  0.76
2018 Piette ER, Moore JH. Improving machine learning reproducibility in genetic association studies with proportional instance cross validation (PICV). Biodata Mining. 11: 6. PMID 29713384 DOI: 10.1186/s13040-018-0167-7  1
2018 Verma SS, Lucas A, Zhang X, Veturi Y, Dudek S, Li B, Li R, Urbanowicz R, Moore JH, Kim D, Ritchie MD. Collective feature selection to identify crucial epistatic variants. Biodata Mining. 11: 5. PMID 29713383 DOI: 10.1186/s13040-018-0168-6  0.92
2018 Zigon B, Li H, Yao X, Fang S, Hasan MA, Yan J, Moore JH, Saykin AJ, Shen L. GPU Accelerated Browser for Neuroimaging Genomics. Neuroinformatics. PMID 29691798 DOI: 10.1007/s12021-018-9376-y  0.68
2018 Cole BS, Moore JH. Eleven quick tips for architecting biomedical informatics workflows with cloud computing. Plos Computational Biology. 14: e1005994. PMID 29596416 DOI: 10.1371/journal.pcbi.1005994  0.76
2018 Beaulieu-Jones BK, Lavage DR, Snyder JW, Moore JH, Pendergrass SA, Bauer CR. Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis. Jmir Medical Informatics. 6: e11. PMID 29475824 DOI: 10.2196/medinform.8960  1
2018 Sipper M, Fu W, Ahuja K, Moore JH. Investigating the parameter space of evolutionary algorithms. Biodata Mining. 11: 2. PMID 29467825 DOI: 10.1186/s13040-018-0164-x  0.64
2018 Vajravelu RK, Scott FI, Mamtani R, Li H, Moore JH, Lewis JD. Medication class enrichment analysis: a novel algorithm to analyze multiple pharmacologic exposures simultaneously using electronic health record data. Journal of the American Medical Informatics Association : Jamia. PMID 29378062 DOI: 10.1093/jamia/ocx162  0.56
2018 Manduchi E, Chesi A, Hall MA, Grant SFA, Moore JH. Leveraging putative enhancer-promoter interactions to investigate two-way epistasis in Type 2 Diabetes GWAS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 548-558. PMID 29218913  0.92
2018 Lussier YA, Berghout J, Vitali F, Ramos KS, Kann M, Moore JH. Reading Between the Genes: Computational Models to Discover Function from Noncoding DNA. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 507-511. PMID 29218909  0.56
2018 Orlenko A, Moore JH, Orzechowski P, Olson RS, Cairns J, Caraballo PJ, Weinshilboum RM, Wang L, Breitenstein MK. Considerations for automated machine learning in clinical metabolic profiling: Altered homocysteine plasma concentration associated with metformin exposure. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 460-471. PMID 29218905  0.76
2018 Moore JH, Shestov M, Schmitt P, Olson RS. A heuristic method for simulating open-data of arbitrary complexity that can be used to compare and evaluate machine learning methods. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 259-267. PMID 29218887  0.6
2018 Olson RS, Cava W, Mustahsan Z, Varik A, Moore JH. Data-driven advice for applying machine learning to bioinformatics problems. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 192-203. PMID 29218881  0.6
2018 Beaulieu-Jones BK, Orzechowski P, Moore JH. Mapping Patient Trajectories using Longitudinal Extraction and Deep Learning in the MIMIC-III Critical Care Database. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 123-132. PMID 29218875  1
2017 Huang J, Zhang X, Du J, Duan R, Yang L, Moore JH, Chen Y, Tao C. Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data. Studies in Health Technology and Informatics. 245: 1268. PMID 29295353  0.8
2017 Olson RS, La Cava W, Orzechowski P, Urbanowicz RJ, Moore JH. PMLB: a large benchmark suite for machine learning evaluation and comparison. Biodata Mining. 10: 36. PMID 29238404 DOI: 10.1186/s13040-017-0154-4  1
2017 Skarke C, Lahens NF, Rhoades SD, Campbell A, Bittinger K, Bailey A, Hoffmann C, Olson RS, Chen L, Yang G, Price TS, Moore JH, Bushman FD, Greene CS, Grant GR, et al. A Pilot Characterization of the Human Chronobiome. Scientific Reports. 7: 17141. PMID 29215023 DOI: 10.1038/s41598-017-17362-6  1
2017 Sipper M, Moore JH. Artificial intelligence: more human with human. Biodata Mining. 10: 34. PMID 29213332 DOI: 10.1186/s13040-017-0157-1  0.64
2017 Huang J, Duan R, Hubbard RA, Wu Y, Moore JH, Xu H, Chen Y. PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data. Journal of the American Medical Informatics Association : Jamia. PMID 29206922 DOI: 10.1093/jamia/ocx137  0.8
2017 Huang J, Liu Y, Vitale S, Penning TM, Whitehead AS, Blair IA, Vachani A, Clapper ML, Muscat JE, Lazarus P, Scheet P, Moore JH, Chen Y. On meta- and mega-analyses for gene-environment interactions. Genetic Epidemiology. PMID 29110346 DOI: 10.1002/gepi.22085  0.8
2017 Hall MA, Wallace J, Lucas A, Kim D, Basile AO, Verma SS, McCarty CA, Brilliant MH, Peissig PL, Kitchner TE, Verma A, Pendergrass SA, Dudek SM, Moore JH, Ritchie MD. PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies. Nature Communications. 8: 1167. PMID 29079728 DOI: 10.1038/s41467-017-00802-2  0.92
2017 Cole BS, Hall MA, Urbanowicz RJ, Gilbert-Diamond D, Moore JH. Analysis of Gene-Gene Interactions. Current Protocols in Human Genetics. 95: 1.14.1-1.14.10. PMID 29044470 DOI: 10.1002/cphg.45  1
2017 Wang L, Damrauer SM, Zhang H, Zhang AX, Xiao R, Moore JH, Chen J. Phenotype validation in electronic health records based genetic association studies. Genetic Epidemiology. PMID 29023970 DOI: 10.1002/gepi.22080  0.6
2017 Ritchie MD, Davis JR, Aschard H, Battle A, Conti D, Du M, Eskin E, Fallin MD, Hsu L, Kraft P, Moore JH, Pierce BL, Bien SA, Thomas DC, Wei P, et al. Incorporation of Biological Knowledge Into the Study of Gene-Environment Interactions. American Journal of Epidemiology. 186: 771-777. PMID 28978191 DOI: 10.1093/aje/kwx229  0.92
2017 Mechanic LE, Lindström S, Daily KM, Sieberts SK, Amos CI, Chen HS, Cox NJ, Dathe M, Feuer EJ, Guertin MJ, Hoffman J, Liu Y, Moore JH, Myers CL, Ritchie MD, et al. Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology. Plos Genetics. 13: e1006945. PMID 28957327 DOI: 10.1371/journal.pgen.1006945  0.92
2017 Graham BE, Darabos C, Huang M, Muglia LJ, Moore JH, Williams SM. Evolutionarily derived networks to inform disease pathways. Genetic Epidemiology. PMID 28944497 DOI: 10.1002/gepi.22078  1
2017 Sipper M, Olson RS, Moore JH. Evolutionary computation: the next major transition of artificial intelligence? Biodata Mining. 10: 26. PMID 28775766 DOI: 10.1186/s13040-017-0147-3  0.64
2017 Holzinger ER, Verma SS, Moore CB, Hall M, De R, Gilbert-Diamond D, Lanktree MB, Pankratz N, Amuzu A, Burt A, Dale C, Dudek S, Furlong CE, Gaunt TR, Kim DS, ... ... Moore JH, et al. Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. Biodata Mining. 10: 25. PMID 28770004 DOI: 10.1186/s13040-017-0145-5  1
2017 Sobota RS, Stein CM, Kodaman N, Maro I, Wieland-Alter W, Igo RP, Magohe A, Malone LL, Chervenak K, Hall NB, Matee M, Mayanja-Kizza H, Joloba M, Moore JH, Scott WK, et al. A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa. Plos Genetics. 13: e1006710. PMID 28628665 DOI: 10.1371/journal.pgen.1006710  0.92
2017 Yao X, Yan J, Liu K, Kim S, Nho K, Risacher SL, Greene CS, Moore JH, Saykin AJ, Shen L. Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules. Bioinformatics (Oxford, England). PMID 28575147 DOI: 10.1093/bioinformatics/btx344  1
2017 Moore JH, Andrews PC, Olson RS, Carlson SE, Larock CR, Bulhoes MJ, O'Connor JP, Greytak EM, Armentrout SL. Grid-based stochastic search for hierarchical gene-gene interactions in population-based genetic studies of common human diseases. Biodata Mining. 10: 19. PMID 28572842 DOI: 10.1186/s13040-017-0139-3  0.6
2017 Tragante V, Gho JMIH, Felix JF, Vasan RS, Smith NL, Voight BF, Palmer C, van der Harst P, Moore JH, Asselbergs FW. Gene Set Enrichment Analyses: lessons learned from the heart failure phenotype. Biodata Mining. 10: 18. PMID 28559929 DOI: 10.1186/s13040-017-0137-5  0.72
2017 Kodaman N, Sobota RS, Asselbergs FW, Oetjens MT, Moore JH, Brown NJ, Aldrich MC, Williams SM. Genetic Effects on the Correlation Structure of CVD Risk Factors: Exome-Wide Data From a Ghanaian Population. Global Heart. PMID 28408189 DOI: 10.1016/j.gheart.2017.01.013  0.92
2016 Cheng S, Andrew AS, Andrews PC, Moore JH. Complex systems analysis of bladder cancer susceptibility reveals a role for decarboxylase activity in two genome-wide association studies. Biodata Mining. 9: 40. PMID 27999618 DOI: 10.1186/s13040-016-0119-z  0.52
2016 Moore JH, Jennings SF, Greene CS, Hunter LE, Perkins AD, Williams-Devane C, Wunsch DC, Zhao Z, Huang X. NO-BOUNDARY THINKING IN BIOINFORMATICS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 646-648. PMID 27897015  1
2016 Garmire LX, Gliske S, Nguyen QC, Chen JH, Nemati S, VAN Horn JD, Moore JH, Shreffler C, Dunn M. THE TRAINING OF NEXT GENERATION DATA SCIENTISTS IN BIOMEDICINE. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 640-645. PMID 27897014  0.36
2016 Beaulieu-Jones BK, Moore JH. MISSING DATA IMPUTATION IN THE ELECTRONIC HEALTH RECORD USING DEEPLY LEARNED AUTOENCODERS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 207-218. PMID 27896976  1
2016 De R, Verma SS, Holzinger E, Hall M, Burt A, Carrell DS, Crosslin DR, Jarvik GP, Kuivaniemi H, Kullo IJ, Lange LA, Lanktree MB, Larson EB, North KE, Reiner AP, ... ... Moore JH, et al. Identifying gene-gene interactions that are highly associated with four quantitative lipid traits across multiple cohorts. Human Genetics. PMID 27848076 DOI: 10.1007/s00439-016-1738-7  1
2016 Yao X, Yan J, Kim S, Nho K, Risacher SL, Inlow M, Moore JH, Saykin AJ, Shen L. Two-dimensional enrichment analysis for mining high-level imaging genetic associations. Brain Informatics. PMID 27747820 DOI: 10.1007/s40708-016-0052-4  0.68
2016 Kodaman N, Aldrich MC, Sobota R, Asselbergs FW, Poku KA, Brown NJ, Moore JH, Williams SM. Cardiovascular Disease Risk Factors in Ghana during the Rural-to-Urban Transition: A Cross-Sectional Study. Plos One. 11: e0162753. PMID 27732601 DOI: 10.1371/journal.pone.0162753  0.92
2016 Kodaman N, Aldrich MC, Sobota R, Asselbergs FW, Brown NJ, Moore JH, Williams SM. Plasminogen Activator Inhibitor-1 and Diagnosis of the Metabolic Syndrome in a West African Population. Journal of the American Heart Association. 5. PMID 27697752 DOI: 10.1161/JAHA.116.003867  0.92
2016 Denaxas SC, Asselbergs FW, Moore JH. The tip of the iceberg: challenges of accessing hospital electronic health record data for biological data mining. Biodata Mining. 9: 29. PMID 27688810 DOI: 10.1186/s13040-016-0109-1  0.72
2016 Frost HR, Shen L, Saykin AJ, Williams SM, Moore JH. Identifying significant gene-environment interactions using a combination of screening testing and hierarchical false discovery rate control. Genetic Epidemiology. PMID 27578615 DOI: 10.1002/gepi.21997  1
2016 Li H, Achour I, Bastarache L, Berghout J, Gardeux V, Li J, Lee Y, Pesce L, Yang X, Ramos KS, Foster I, Denny JC, Moore JH, Lussier YA. Integrative genomics analyses unveil downstream biological effectors of disease-specific polymorphisms buried in intergenic regions. Npj Genomic Medicine. 1. PMID 27482468 DOI: 10.1038/npjgenmed.2016.6  0.56
2016 Wei R, De Vivo I, Huang S, Zhu X, Risch H, Moore JH, Yu H, Garmire LX. Meta-dimensional data integration identifies critical pathways for susceptibility, tumorigenesis and progression of endometrial cancer. Oncotarget. PMID 27409342 DOI: 10.18632/oncotarget.10509  0.36
2016 Hall MA, Moore JH, Ritchie MD. Embracing Complex Associations in Common Traits: Critical Considerations for Precision Medicine. Trends in Genetics : Tig. PMID 27392675 DOI: 10.1016/j.tig.2016.06.001  0.92
2016 Frost HR, Amos CI, Moore JH. A global test for gene-gene interactions based on random matrix theory. Genetic Epidemiology. PMID 27386793 DOI: 10.1002/gepi.21990  1
2016 Moore JH, Holmes JH. The golden era of biomedical informatics has begun. Biodata Mining. 9: 15. PMID 27069509 DOI: 10.1186/s13040-016-0092-6  1
2016 Qiu J, Moore JH, Darabos C. Studying the Genetics of Complex Disease With Ancestry-Specific Human Phenotype Networks: The Case of Type 2 Diabetes in East Asian Populations. Genetic Epidemiology. PMID 27061195 DOI: 10.1002/gepi.21964  1
2016 Li J, Malley JD, Andrew AS, Karagas MR, Moore JH. Detecting gene-gene interactions using a permutation-based random forest method. Biodata Mining. 9: 14. PMID 27053949 DOI: 10.1186/s13040-016-0093-5  1
2016 Huang M, Graham BE, Zhang G, Harder R, Kodaman N, Moore JH, Muglia L, Williams SM. Evolutionary triangulation: informing genetic association studies with evolutionary evidence. Biodata Mining. 9: 12. PMID 27042214 DOI: 10.1186/s13040-016-0091-7  1
2016 Tragante V, Asselbergs FW, Swerdlow DI, Palmer TM, Moore JH, de Bakker PI, Keating BJ, Holmes MV. Harnessing publicly available genetic data to prioritize lipid modifying therapeutic targets for prevention of coronary heart disease based on dysglycemic risk. Human Genetics. PMID 26946290 DOI: 10.1007/s00439-016-1647-9  0.72
2016 Sobota RS, Stein CM, Kodaman N, Scheinfeldt LB, Maro I, Wieland-Alter W, Igo RP, Magohe A, Malone LL, Chervenak K, Hall NB, Modongo C, Zetola N, Matee M, Joloba M, ... ... Moore JH, et al. A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals. American Journal of Human Genetics. 98: 514-524. PMID 26942285 DOI: 10.1016/j.ajhg.2016.01.015  1
2016 Himmelstein DS, Greene CS, Moore JH. Erratum to: Evolving hard problems: generating human genetics datasets with a complex etiology. Biodata Mining. 9: 9. PMID 26848312 DOI: 10.1186/s13040-016-0085-5  1
2016 Du L, Huang H, Yan J, Kim S, Risacher SL, Inlow M, Moore JH, Saykin AJ, Shen L. Structured Sparse Canonical Correlation Analysis for Brain Imaging Genetics: An Improved GraphNet Method. Bioinformatics (Oxford, England). PMID 26801960 DOI: 10.1093/bioinformatics/btw033  1
2016 Madan JC, Hoen AG, Lundgren SN, Farzan SF, Cottingham KL, Morrison HG, Sogin ML, Li H, Moore JH, Karagas MR. Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants. Jama Pediatrics. 1-8. PMID 26752321 DOI: 10.1001/jamapediatrics.2015.3732  1
2015 De R, Hu T, Moore JH, Gilbert-Diamond D. Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity. Biodata Mining. 8: 45. PMID 26715945 DOI: 10.1186/s13040-015-0077-x  1
2015 Fan R, Wang Y, Chiu CY, Chen W, Ren H, Li Y, Boehnke M, Amos CI, Moore JH, Xiong M. Meta-analysis of Complex Diseases at Gene Level by Generalized Functional Linear Models. Genetics. PMID 26715663 DOI: 10.1534/genetics.115.180869  1
2015 Hu T, Andrew AS, Karagas MR, Moore JH. Functional dyadicity and heterophilicity of gene-gene interactions in statistical epistasis networks. Biodata Mining. 8: 43. PMID 26697115 DOI: 10.1186/s13040-015-0062-4  1
2015 De R, Verma SS, Drenos F, Holzinger ER, Holmes MV, Hall MA, Crosslin DR, Carrell DS, Hakonarson H, Jarvik G, Larson E, Pacheco JA, Rasmussen-Torvik LJ, Moore CB, Asselbergs FW, ... Moore JH, et al. Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR). Biodata Mining. 8: 41. PMID 26674805 DOI: 10.1186/s13040-015-0074-0  1
2015 Du L, Yan J, Kim S, Risacher SL, Huang H, Inlow M, Moore JH, Saykin AJ, Shen L. GN-SCCA: GraphNet based Sparse Canonical Correlation Analysis for Brain Imaging Genetics. Brain Informatics and Health : 8th International Conference, Bih 2015, London, Uk, August 30-September 2, 2015. Proceedings / Yike Guo, Karl Friston, Faisal Aldo, Sean Hill, Hanchuan Peng (Eds.). Bih (Conference) (8th : 2015 : London, E.... 9250: 275-284. PMID 26636135  0.68
2015 Yao X, Yan J, Kim S, Nho K, Risacher SL, Inlow M, Moore JH, Saykin AJ, Shen L. Two-dimensional Enrichment Analysis for Mining High-level Imaging Genetic Associations. Brain Informatics and Health : 8th International Conference, Bih 2015, London, Uk, August 30-September 2, 2015. Proceedings / Yike Guo, Karl Friston, Faisal Aldo, Sean Hill, Hanchuan Peng (Eds.). Bih (Conference) (8th : 2015 : London, E.... 9250: 115-124. PMID 26568986 DOI: 10.1007/978-3-319-23344-4_12  1
2015 Frost HR, Li Z, Asselbergs FW, Moore JH. An Independent Filter for Gene Set Testing Based on Spectral Enrichment. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1076-86. PMID 26451820 DOI: 10.1109/TCBB.2015.2415815  1
2015 Urbanowicz RJ, Moore JH. ExSTraCS 2.0: Description and Evaluation of a Scalable Learning Classifier System. Evolutionary Intelligence. 8: 89-116. PMID 26417393 DOI: 10.1007/s12065-015-0128-8  1
2015 White MJ, Kodaman NM, Harder RH, Asselbergs FW, Vaughan DE, Brown NJ, Moore JH, Williams SM. Genetics of Plasminogen Activator Inhibitor-1 (PAI-1) in a Ghanaian Population. Plos One. 10: e0136379. PMID 26322636 DOI: 10.1371/journal.pone.0136379  1
2015 Siwo GH, Williams SM, Moore JH. Erratum to: The future of genomic medicine education in Africa. Genome Medicine. 7: 70. PMID 26321605 DOI: 10.1186/s13073-015-0193-8  0.92
2015 Frost HR, Li Z, Moore JH. Principal component gene set enrichment (PCGSE). Biodata Mining. 8: 25. PMID 26300978 DOI: 10.1186/s13040-015-0059-z  1
2015 Siwo GH, Williams SM, Moore JH. The future of genomic medicine education in Africa. Genome Medicine. 7: 47. PMID 26246857 DOI: 10.1186/s13073-015-0175-x  0.92
2015 Weiss TL, Zieselman A, Hill DP, Diamond SG, Shen L, Saykin AJ, Moore JH. The role of visualization and 3-D printing in biological data mining. Biodata Mining. 8: 22. PMID 26246856 DOI: 10.1186/s13040-015-0056-2  0.68
2015 Gui J, Greene CS, Sullivan C, Taylor W, Moore JH, Kim C. Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study. Biodata Mining. 8: 17. PMID 26097506 DOI: 10.1186/s13040-015-0050-8  1
2015 Williams SM, Moore JH. Lumping versus splitting: the need for biological data mining in precision medicine. Biodata Mining. 8: 16. PMID 26085842 DOI: 10.1186/s13040-015-0049-1  1
2015 Caramori ML, Kim Y, Natarajan R, Moore JH, Rich SS, Mychaleckyj JC, Kuriyama R, Kirkpatrick D, Mauer M. Differential Response to High Glucose in Skin Fibroblasts of Monozygotic Twins Discordant for Type 1 Diabetes. The Journal of Clinical Endocrinology and Metabolism. 100: E883-9. PMID 25901990 DOI: 10.1210/jc.2014-4467  1
2015 Frost HR, Li Z, Moore JH. Spectral gene set enrichment (SGSE). Bmc Bioinformatics. 16: 70. PMID 25879888 DOI: 10.1186/s12859-015-0490-7  1
2015 Caramori ML, Kim Y, Goldfine AB, Moore JH, Rich SS, Mychaleckyj JC, Kirkpatrick D, Nickerson H, Krolewski AS, Mauer M. Differential Gene Expression in Diabetic Nephropathy in Individuals With Type 1 Diabetes. The Journal of Clinical Endocrinology and Metabolism. 100: E876-82. PMID 25871838 DOI: 10.1210/jc.2014-4465  1
2015 Yan J, Kim S, Nho K, Chen R, Risacher SL, Moore JH, Saykin AJ, Shen L. Hippocampal transcriptome-guided genetic analysis of correlated episodic memory phenotypes in Alzheimer's disease. Frontiers in Genetics. 6: 117. PMID 25859259 DOI: 10.3389/fgene.2015.00117  1
2015 Greene AC, Giffin KA, Greene CS, Moore JH. Adapting bioinformatics curricula for big data. Briefings in Bioinformatics. PMID 25829469 DOI: 10.1093/bib/bbv018  1
2015 Hoen AG, Li J, Moulton LA, O'Toole GA, Housman ML, Koestler DC, Guill MF, Moore JH, Hibberd PL, Morrison HG, Sogin ML, Karagas MR, Madan JC. Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis. The Journal of Pediatrics. 167: 138-147.e3. PMID 25818499 DOI: 10.1016/j.jpeds.2015.02.049  1
2015 Dahal K, Sharma SP, Fung E, Lee J, Moore JH, Unterborn JN, Williams SM. Meta-analysis of Randomized Controlled Trials of Genotype-guided versus Standard Dosing of Warfarin. Chest. PMID 25811981 DOI: 10.1378/chest.14-2947  1
2015 Beaulieu-Jones BR, O'Brien DM, Hopkins SE, Moore JH, Boyer BB, Gilbert-Diamond D. Sex, Adiposity, and Hypertension Status Modify the Inverse Effect of Marine Food Intake on Blood Pressure in Alaska Native (Yup'ik) People. The Journal of Nutrition. 145: 931-8. PMID 25788581 DOI: 10.3945/jn.114.209619  1
2015 Ma S, Johnson D, Ashby C, Xiong D, Cramer CL, Moore JH, Zhang S, Huang X. SPARCoC: a new framework for molecular pattern discovery and cancer gene identification. Plos One. 10: e0117135. PMID 25768286 DOI: 10.1371/journal.pone.0117135  1
2015 White MJ, Eren F, A??rba?l? D, Chen J, Hu T, Moore JH, Williams SM, A??rba?l? M. A systems genetics approach to dyslipidemia in children and adolescents. Omics : a Journal of Integrative Biology. 19: 248-59. PMID 25671407 DOI: 10.1089/omi.2014.0140  1
2015 Huang X, Jennings SF, Bruce B, Buchan A, Cai L, Chen P, Cramer CL, Guan W, Hilgert UK, Jiang H, Li Z, McClure G, McMullen DF, Nanduri B, Perkins A, ... ... Moore JH, et al. Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. Biodata Mining. 8: 7. PMID 25670967 DOI: 10.1186/s13040-015-0037-5  1
2015 Pattin KA, Greene AC, Altman RB, Cohen KB, Wethington E, Görg C, Hunter LE, Muse SV, Radivojac P, Moore JH. Training the next generation of quantitative biologists in the era of big data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 488-92. PMID 25592609  1
2015 Hu T, Darabos C, Cricco ME, Kong E, Moore JH. Genome-wide genetic interaction analysis of glaucoma using expert knowledge derived from human phenotype networks. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 207-18. PMID 25592582  1
2015 Frost HR, Andrew AS, Karagas MR, Moore JH. A screening-testing approach for detecting gene-environment interactions using sequential penalized and unpenalized multiple logistic regression. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 183-94. PMID 25592580  1
2015 Darabos C, Grussing ED, Cricco ME, Clark KA, Moore JH. A bipartite network approach to inferring interactions between environmental exposures and human diseases. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 171-82. PMID 25592579  1
2015 Moore JH, Hill DP. Epistasis analysis using artificial intelligence. Methods in Molecular Biology (Clifton, N.J.). 1253: 327-46. PMID 25403541 DOI: 10.1007/978-1-4939-2155-3_18  1
2015 Moore JH, Andrews PC. Epistasis analysis using multifactor dimensionality reduction. Methods in Molecular Biology (Clifton, N.J.). 1253: 301-14. PMID 25403539 DOI: 10.1007/978-1-4939-2155-3_16  1
2015 Darabos C, Moore JH. Genome-wide epistasis and pleiotropy characterized by the bipartite human phenotype network. Methods in Molecular Biology (Clifton, N.J.). 1253: 269-83. PMID 25403537 DOI: 10.1007/978-1-4939-2155-3_14  1
2015 Moore JH, Hu T. Epistasis analysis using information theory. Methods in Molecular Biology (Clifton, N.J.). 1253: 257-68. PMID 25403536 DOI: 10.1007/978-1-4939-2155-3_13  0.8
2015 Moore JH, Amos R, Kiralis J, Andrews PC. Heuristic identification of biological architectures for simulating complex hierarchical genetic interactions. Genetic Epidemiology. 39: 25-34. PMID 25395175 DOI: 10.1002/gepi.21865  1
2015 Chen HS, Hutter CM, Mechanic LE, Amos CI, Bafna V, Hauser ER, Hernandez RD, Li C, Liberles DA, McAllister K, Moore JH, Paltoo DN, Papanicolaou GJ, Peng B, Ritchie MD, et al. Genetic simulation tools for post-genome wide association studies of complex diseases. Genetic Epidemiology. 39: 11-9. PMID 25371374 DOI: 10.1002/gepi.21870  1
2015 Andrew AS, Gui J, Hu T, Wyszynski A, Marsit CJ, Kelsey KT, Schned AR, Tanyos SA, Pendleton EM, Ekstrom RM, Li Z, Zens MS, Borsuk M, Moore JH, Karagas MR. Genetic polymorphisms modify bladder cancer recurrence and survival in a USA population-based prognostic study. Bju International. 115: 238-47. PMID 24666523 DOI: 10.1111/bju.12641  1
2014 Malley JD, Malley KG, Moore JH. O brave new world that has such machines in it. Biodata Mining. 7: 26. PMID 25780388 DOI: 10.1186/1756-0381-7-26  0.44
2014 Pouladi N, Cowper-Sallari R, Moore JH. Combining functional genomics strategies identifies modular heterogeneity of breast cancer intrinsic subtypes. Biodata Mining. 7: 27. PMID 25745517 DOI: 10.1186/1756-0381-7-27  0.6
2014 Andrew AS, Marsit CJ, Schned AR, Seigne JD, Kelsey KT, Moore JH, Perreard L, Karagas MR, Sempere LF. Expression of tumor suppressive microRNA-34a is associated with a reduced risk of bladder cancer recurrence. International Journal of Cancer. Journal International Du Cancer. PMID 25556547 DOI: 10.1002/ijc.29413  1
2014 Chernikova DA, Koestler DC, Hoen AG, Housman ML, Hibberd PL, Moore JH, Morrison HG, Sogin ML, Zain-Ul-Abideen M, Madan JC. Fetal exposures and perinatal influences on the stool microbiota of premature infants. The Journal of Maternal-Fetal & Neonatal Medicine : the Official Journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians. 1-7. PMID 25394613 DOI: 10.3109/14767058.2014.987748  1
2014 Du L, Jingwen Y, Kim S, Risacher SL, Huang H, Inlow M, Moore JH, Saykin AJ, Shen L. A novel structure-aware sparse learning algorithm for brain imaging genetics. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 329-36. PMID 25320816  0.68
2014 Gorlov IP, Moore JH, Peng B, Jin JL, Gorlova OY, Amos CI. SNP characteristics predict replication success in association studies. Human Genetics. 133: 1477-86. PMID 25273843 DOI: 10.1007/s00439-014-1493-6  1
2014 Davis MA, Gilbert-Diamond D, Karagas MR, Li Z, Moore JH, Williams SM, Frost HR. A dietary-wide association study (DWAS) of environmental metal exposure in US children and adults. Plos One. 9: e104768. PMID 25198543 DOI: 10.1371/journal.pone.0104768  1
2014 Zieselman AL, Fisher JM, Hu T, Andrews PC, Greene CS, Shen L, Saykin AJ, Moore JH. Computational genetics analysis of grey matter density in Alzheimer's disease. Biodata Mining. 7: 17. PMID 25165488 DOI: 10.1186/1756-0381-7-17  1
2014 Yan J, Du L, Kim S, Risacher SL, Huang H, Moore JH, Saykin AJ, Shen L. Transcriptome-guided amyloid imaging genetic analysis via a novel structured sparse learning algorithm. Bioinformatics (Oxford, England). 30: i564-71. PMID 25161248 DOI: 10.1093/bioinformatics/btu465  1
2014 Hu T, Banzhaf W, Moore JH. The effects of recombination on phenotypic exploration and robustness in evolution. Artificial Life. 20: 457-70. PMID 25148550 DOI: 10.1162/ARTL_a_00145  0.8
2014 Pechenick DA, Payne JL, Moore JH. Phenotypic robustness and the assortativity signature of human transcription factor networks. Plos Computational Biology. 10: e1003780. PMID 25121490 DOI: 10.1371/journal.pcbi.1003780  1
2014 Penrod NM, Moore JH. Data science approaches to pharmacogenetics. Current Molecular Medicine. 14: 805-13. PMID 25109795  1
2014 Malley JD, Moore JH. First complex, then simple. Biodata Mining. 7: 13. PMID 25076985 DOI: 10.1186/1756-0381-7-13  0.44
2014 Ciesielski TH, Pendergrass SA, White MJ, Kodaman N, Sobota RS, Huang M, Bartlett J, Li J, Pan Q, Gui J, Selleck SB, Amos CI, Ritchie MD, Moore JH, Williams SM. Diverse convergent evidence in the genetic analysis of complex disease: coordinating omic, informatic, and experimental evidence to better identify and validate risk factors. Biodata Mining. 7: 10. PMID 25071867 DOI: 10.1186/1756-0381-7-10  1
2014 Malley JD, Moore JH. Innovation is often unnerving: the door into summer. Biodata Mining. 7: 12. PMID 25057294 DOI: 10.1186/1756-0381-7-12  0.44
2014 Urbanowicz RJ, Granizo-Mackenzie AL, Kiralis J, Moore JH. A classification and characterization of two-locus, pure, strict, epistatic models for simulation and detection. Biodata Mining. 7: 8. PMID 25057293 DOI: 10.1186/1756-0381-7-8  1
2014 Mackay TF, Moore JH. Why epistasis is important for tackling complex human disease genetics. Genome Medicine. 6: 42. PMID 25031624 DOI: 10.1186/gm561  1
2014 Penrod NM, Greene CS, Moore JH. Predicting targeted drug combinations based on Pareto optimal patterns of coexpression network connectivity. Genome Medicine. 6: 33. PMID 24944582 DOI: 10.1186/gm550  1
2014 White MJ, Tacconelli A, Chen JS, Wejse C, Hill PC, Gomes VF, Velez-Edwards DR, Østergaard LJ, Hu T, Moore JH, Novelli G, Scott WK, Williams SM, Sirugo G. Epiregulin (EREG) and human V-ATPase (TCIRG1): genetic variation, ethnicity and pulmonary tuberculosis susceptibility in Guinea-Bissau and The Gambia. Genes and Immunity. 15: 370-7. PMID 24898387 DOI: 10.1038/gene.2014.28  1
2014 De R, Bush WS, Moore JH. Bioinformatics challenges in genome-wide association studies (GWAS). Methods in Molecular Biology (Clifton, N.J.). 1168: 63-81. PMID 24870131 DOI: 10.1007/978-1-4939-0847-9_5  0.88
2014 Greene CS, Tan J, Ung M, Moore JH, Cheng C. Big data bioinformatics. Journal of Cellular Physiology. 229: 1896-900. PMID 24799088 DOI: 10.1002/jcp.24662  1
2014 Ahles TA, Li Y, McDonald BC, Schwartz GN, Kaufman PA, Tsongalis GJ, Moore JH, Saykin AJ. Longitudinal assessment of cognitive changes associated with adjuvant treatment for breast cancer: the impact of APOE and smoking. Psycho-Oncology. 23: 1382-90. PMID 24789331 DOI: 10.1002/pon.3545  1
2014 Hu T, Pan Q, Andrew AS, Langer JM, Cole MD, Tomlinson CR, Karagas MR, Moore JH. Functional genomics annotation of a statistical epistasis network associated with bladder cancer susceptibility. Biodata Mining. 7: 5. PMID 24725556 DOI: 10.1186/1756-0381-7-5  1
2014 Tragante V, Moore JH, Asselbergs FW. The ENCODE project and perspectives on pathways. Genetic Epidemiology. 38: 275-80. PMID 24723339 DOI: 10.1002/gepi.21802  0.72
2014 Dasgupta A, Szymczak S, Moore JH, Bailey-Wilson JE, Malley JD. Risk estimation using probability machines. Biodata Mining. 7: 2. PMID 24581306 DOI: 10.1186/1756-0381-7-2  1
2014 Huang J, Huffman JE, Yamakuchi M, Yamkauchi M, Trompet S, Asselbergs FW, Sabater-Lleal M, Trégouët DA, Chen WM, Smith NL, Kleber ME, Shin SY, Becker DM, Tang W, Dehghan A, ... ... Moore JH, et al. Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2. Arteriosclerosis, Thrombosis, and Vascular Biology. 34: 1093-101. PMID 24578379 DOI: 10.1161/ATVBAHA.113.302088  1
2014 Frost HR, Moore JH. Optimization of gene set annotations via entropy minimization over variable clusters (EMVC). Bioinformatics (Oxford, England). 30: 1698-706. PMID 24574114 DOI: 10.1093/bioinformatics/btu110  1
2014 Pan Q, Hu T, Malley JD, Andrew AS, Karagas MR, Moore JH. A system-level pathway-phenotype association analysis using synthetic feature random forest. Genetic Epidemiology. 38: 209-19. PMID 24535726 DOI: 10.1002/gepi.21794  1
2014 Penrod NM, Moore JH. Influence networks based on coexpression improve drug target discovery for the development of novel cancer therapeutics. Bmc Systems Biology. 8: 12. PMID 24495353 DOI: 10.1186/1752-0509-8-12  1
2014 Darabos C, White MJ, Graham BE, Leung DN, Williams SM, Moore JH. The multiscale backbone of the human phenotype network based on biological pathways. Biodata Mining. 7: 1. PMID 24460644 DOI: 10.1186/1756-0381-7-1  1
2014 Pattin KA, Greene AC, Altman RB, Hunter LE, Ross DA, Foster JA, Moore JH. Building the next generation of quantitative biologists. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 417-21. PMID 24297567  1
2014 Darabos C, Harmon SH, Moore JH. Using the bipartite human phenotype network to reveal pleiotropy and epistasis beyond the gene. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 188-99. PMID 24297546  1
2014 Shen L, Thompson PM, Potkin SG, Bertram L, Farrer LA, Foroud TM, Green RC, Hu X, Huentelman MJ, Kim S, Kauwe JS, Li Q, Liu E, Macciardi F, Moore JH, et al. Genetic analysis of quantitative phenotypes in AD and MCI: imaging, cognition and biomarkers. Brain Imaging and Behavior. 8: 183-207. PMID 24092460 DOI: 10.1007/s11682-013-9262-z  1
2014 Koestler DC, Li J, Baron JA, Tsongalis GJ, Butterly LF, Goodrich M, Lesseur C, Karagas MR, Marsit CJ, Moore JH, Andrew AS, Srivastava A. Distinct patterns of DNA methylation in conventional adenomas involving the right and left colon. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 27: 145-55. PMID 23868178 DOI: 10.1038/modpathol.2013.104  1
2014 Payne JL, Moore JH, Wagner A. Robustness, evolvability, and the logic of genetic regulation. Artificial Life. 20: 111-26. PMID 23373974 DOI: 10.1162/ARTL_a_00099  1
2013 Yan J, Huang H, Risacher SL, Kim S, Inlow M, Moore JH, Saykin AJ, Shen L. Network-Guided Sparse Learning for Predicting Cognitive Outcomes from MRI Measures. Multimodal Brain Image Analysis : Third International Workshop, Mbia 2013, Held in Conjunction With Miccai 2013, Nagoya, Japan, September 22, 2013 : Proceedings / Li Shen, Tianming Liu, Pew-Thian Yap, Heng Huang, Dinggang Shen, Carl-Fre.... 8159: 202-210. PMID 25927078 DOI: 10.1007/978-3-319-02126-3_20  1
2013 Rudd J, Moore JH, Urbanowicz RJ. A Multi-Core Parallelization Strategy for Statistical Significance Testing in Learning Classifier Systems. Evolutionary Intelligence. 6. PMID 24358057 DOI: 10.1007/s12065-013-0092-0  1
2013 Williams SM, Moore JH. Big Data analysis on autopilot? Biodata Mining. 6: 22. PMID 24314297 DOI: 10.1186/1756-0381-6-22  1
2013 Samuels DC, Li C, Li B, Song Z, Torstenson E, Boyd Clay H, Rokas A, Thornton-Wells TA, Moore JH, Hughes TM, Hoffman RD, Haines JL, Murdock DG, Mortlock DP, Williams SM. Recurrent tissue-specific mtDNA mutations are common in humans. Plos Genetics. 9: e1003929. PMID 24244193 DOI: 10.1371/journal.pgen.1003929  1
2013 Huang X, Bruce B, Buchan A, Congdon CB, Cramer CL, Jennings SF, Jiang H, Li Z, McClure G, McMullen R, Moore JH, Nanduri B, Peckham J, Perkins A, Polson SW, et al. No-boundary thinking in bioinformatics research. Biodata Mining. 6: 19. PMID 24192339 DOI: 10.1186/1756-0381-6-19  1
2013 Franceschini N, Fox E, Zhang Z, Edwards TL, Nalls MA, Sung YJ, Tayo BO, Sun YV, Gottesman O, Adeyemo A, Johnson AD, Young JH, Rice K, Duan Q, Chen F, ... ... Moore JH, et al. Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations. American Journal of Human Genetics. 93: 545-54. PMID 23972371 DOI: 10.1016/j.ajhg.2013.07.010  1
2013 Moore JH, Ritchie MD. The central role of biological data mining in connecting diverse disciplines. Biodata Mining. 6: 14. PMID 23937773 DOI: 10.1186/1756-0381-6-14  0.92
2013 Malley JD, Moore JH. The disconnect between classical biostatistics and the biological data mining community. Biodata Mining. 6: 12. PMID 23880104 DOI: 10.1186/1756-0381-6-12  0.44
2013 Penrod NM, Moore JH. Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole. Bmc Medical Genomics. 6: S2. PMID 23819860 DOI: 10.1186/1755-8794-6-S2-S2  1
2013 Gui J, Moore JH, Williams SM, Andrews P, Hillege HL, van der Harst P, Navis G, Van Gilst WH, Asselbergs FW, Gilbert-Diamond D. A Simple and Computationally Efficient Approach to Multifactor Dimensionality Reduction Analysis of Gene-Gene Interactions for Quantitative Traits. Plos One. 8: e66545. PMID 23805232 DOI: 10.1371/journal.pone.0066545  1
2013 Pan Q, Hu T, Moore JH. Epistasis, complexity, and multifactor dimensionality reduction. Methods in Molecular Biology (Clifton, N.J.). 1019: 465-77. PMID 23756906 DOI: 10.1007/978-1-62703-447-0_22  0.8
2013 Tsongalis GJ, Chao E, Hagenkord JM, Hambuch T, Moore JH. Bioinformatics: what the clinical laboratorian needs to know and prepare for. Clinical Chemistry. 59: 1301-5. PMID 23723312 DOI: 10.1373/clinchem.2012.198226  1
2013 Malley JD, Dasgupta A, Moore JH. The limits of p-values for biological data mining. Biodata Mining. 6: 10. PMID 23663551 DOI: 10.1186/1756-0381-6-10  0.44
2013 Talukdar T, Moore JH, Diamond SG. Continuous correction of differential path length factor in near-infrared spectroscopy. Journal of Biomedical Optics. 18: 56001. PMID 23640027 DOI: 10.1117/1.JBO.18.5.056001  1
2013 Pechenick DA, Moore JH, Payne JL. The influence of assortativity on the robustness and evolvability of gene regulatory networks upon gene birth. Journal of Theoretical Biology. 330: 26-36. PMID 23542384 DOI: 10.1016/j.jtbi.2013.03.019  1
2013 Hu T, Chen Y, Kiralis JW, Moore JH. ViSEN: methodology and software for visualization of statistical epistasis networks. Genetic Epidemiology. 37: 283-5. PMID 23468157 DOI: 10.1002/gepi.21718  0.8
2013 Urbanowicz RJ, Andrew AS, Karagas MR, Moore JH. Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: a learning classifier system approach. Journal of the American Medical Informatics Association : Jamia. 20: 603-12. PMID 23444013 DOI: 10.1136/amiajnl-2012-001574  1
2013 Molineros JE, Maiti AK, Sun C, Looger LL, Han S, Kim-Howard X, Glenn S, Adler A, Kelly JA, Niewold TB, Gilkeson GS, Brown EE, Alarcón GS, Edberg JC, Petri M, ... ... Moore JH, et al. Admixture mapping in lupus identifies multiple functional variants within IFIH1 associated with apoptosis, inflammation, and autoantibody production. Plos Genetics. 9: e1003222. PMID 23441136 DOI: 10.1371/journal.pgen.1003222  1
2013 Hu T, Andrew AS, Karagas MR, Moore JH. Statistical epistasis networks reduce the computational complexity of searching three-locus genetic models. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 397-408. PMID 23424144  1
2013 Collins RL, Hu T, Wejse C, Sirugo G, Williams SM, Moore JH. Multifactor dimensionality reduction reveals a three-locus epistatic interaction associated with susceptibility to pulmonary tuberculosis. Biodata Mining. 6: 4. PMID 23418869 DOI: 10.1186/1756-0381-6-4  1
2013 Hu T, Chen Y, Kiralis JW, Collins RL, Wejse C, Sirugo G, Williams SM, Moore JH. An information-gain approach to detecting three-way epistatic interactions in genetic association studies. Journal of the American Medical Informatics Association : Jamia. 20: 630-6. PMID 23396514 DOI: 10.1136/amiajnl-2012-001525  1
2013 Warren CA, van Opstal EJ, Riggins MS, Li Y, Moore JH, Kolling GL, Guerrant RL, Hoffman PS. Vancomycin treatment's association with delayed intestinal tissue injury, clostridial overgrowth, and recurrence of Clostridium difficile infection in mice. Antimicrobial Agents and Chemotherapy. 57: 689-96. PMID 23147742 DOI: 10.1128/AAC.00877-12  0.32
2012 Urbanowicz RJ, Granizo-Mackenzie A, Moore JH. An Analysis Pipeline with Statistical and Visualization-Guided Knowledge Discovery for Michigan-Style Learning Classifier Systems. Ieee Computational Intelligence Magazine. 7: 35-45. PMID 25431544 DOI: 10.1109/MCI.2012.2215124  1
2012 Sloan CD, Andrew AS, Gruber JF, Mwenda KM, Moore JH, Onega T, Karagas MR, Shi X, Duell EJ. Indoor and Outdoor Air Pollution and Lung Cancer in New Hampshire and Vermont. Toxicological and Environmental Chemistry. 94. PMID 24273369 DOI: 10.1080/02772248.2012.659930  1
2012 Bush WS, Moore JH. Chapter 11: Genome-wide association studies. Plos Computational Biology. 8: e1002822. PMID 23300413 DOI: 10.1371/journal.pcbi.1002822  0.88
2012 Andrew AS, Hu T, Gu J, Gui J, Ye Y, Marsit CJ, Kelsey KT, Schned AR, Tanyos SA, Pendleton EM, Mason RA, Morlock EV, Zens MS, Li Z, Moore JH, et al. HSD3B and gene-gene interactions in a pathway-based analysis of genetic susceptibility to bladder cancer. Plos One. 7: e51301. PMID 23284679 DOI: 10.1371/journal.pone.0051301  1
2012 Fung E, Patsopoulos NA, Belknap SM, O'Rourke DJ, Robb JF, Anderson JL, Shworak NW, Moore JH. Effect of genetic variants, especially CYP2C9 and VKORC1, on the pharmacology of warfarin. Seminars in Thrombosis and Hemostasis. 38: 893-904. PMID 23041981 DOI: 10.1055/s-0032-1328891  1
2012 Urbanowicz RJ, Kiralis J, Sinnott-Armstrong NA, Heberling T, Fisher JM, Moore JH. GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures. Biodata Mining. 5: 16. PMID 23025260 DOI: 10.1186/1756-0381-5-16  1
2012 Urbanowicz RJ, Kiralis J, Fisher JM, Moore JH. Predicting the difficulty of pure, strict, epistatic models: metrics for simulated model selection. Biodata Mining. 5: 15. PMID 23014095 DOI: 10.1186/1756-0381-5-15  1
2012 Cowper-Sal lari R, Zhang X, Wright JB, Bailey SD, Cole MD, Eeckhoute J, Moore JH, Lupien M. Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression. Nature Genetics. 44: 1191-8. PMID 23001124 DOI: 10.1038/ng.2416  1
2012 Huang J, Sabater-Lleal M, Asselbergs FW, Tregouet D, Shin SY, Ding J, Baumert J, Oudot-Mellakh T, Folkersen L, Johnson AD, Smith NL, Williams SM, Ikram MA, Kleber ME, Becker DM, ... ... Moore JH, et al. Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation. Blood. 120: 4873-81. PMID 22990020 DOI: 10.1182/blood-2012-06-436188  1
2012 Urbach D, Lupien M, Karagas MR, Moore JH. Cancer heterogeneity: origins and implications for genetic association studies. Trends in Genetics : Tig. 28: 538-43. PMID 22858414 DOI: 10.1016/j.tig.2012.07.001  0.76
2012 Kim NC, Andrews PC, Asselbergs FW, Frost HR, Williams SM, Harris BT, Read C, Askland KD, Moore JH. Gene ontology analysis of pairwise genetic associations in two genome-wide studies of sporadic ALS. Biodata Mining. 5: 9. PMID 22839596 DOI: 10.1186/1756-0381-5-9  1
2012 Zhang X, Cowper-Sal lari R, Bailey SD, Moore JH, Lupien M. Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus. Genome Research. 22: 1437-46. PMID 22665440 DOI: 10.1101/gr.135665.111  0.56
2012 Kerley-Hamilton JS, Trask HW, Ridley CJ, Dufour E, Ringelberg CS, Nurinova N, Wong D, Moodie KL, Shipman SL, Moore JH, Korc M, Shworak NW, Tomlinson CR. Obesity is mediated by differential aryl hydrocarbon receptor signaling in mice fed a Western diet. Environmental Health Perspectives. 120: 1252-9. PMID 22609946 DOI: 10.1289/ehp.1205003  1
2012 Madan JC, Salari RC, Saxena D, Davidson L, O'Toole GA, Moore JH, Sogin ML, Foster JA, Edwards WH, Palumbo P, Hibberd PL. Gut microbial colonisation in premature neonates predicts neonatal sepsis. Archives of Disease in Childhood. Fetal and Neonatal Edition. 97: F456-62. PMID 22562869 DOI: 10.1136/fetalneonatal-2011-301373  1
2012 Lavender NA, Rogers EN, Yeyeodu S, Rudd J, Hu T, Zhang J, Brock GN, Kimbro KS, Moore JH, Hein DW, Kidd LC. Interaction among apoptosis-associated sequence variants and joint effects on aggressive prostate cancer. Bmc Medical Genomics. 5: 11. PMID 22546513 DOI: 10.1186/1755-8794-5-11  1
2012 Akhtar-Zaidi B, Cowper-Sal-lari R, Corradin O, Saiakhova A, Bartels CF, Balasubramanian D, Myeroff L, Lutterbaugh J, Jarrar A, Kalady MF, Willis J, Moore JH, Tesar PJ, Laframboise T, Markowitz S, et al. Epigenomic enhancer profiling defines a signature of colon cancer. Science (New York, N.Y.). 336: 736-9. PMID 22499810 DOI: 10.1126/science.1217277  1
2012 Ramanan VK, Shen L, Moore JH, Saykin AJ. Pathway analysis of genomic data: concepts, methods, and prospects for future development. Trends in Genetics : Tig. 28: 323-32. PMID 22480918 DOI: 10.1016/j.tig.2012.03.004  1
2012 Caramori ML, Kim Y, Moore JH, Rich SS, Mychaleckyj JC, Kikyo N, Mauer M. Gene expression differences in skin fibroblasts in identical twins discordant for type 1 diabetes Diabetes. 61: 739-744. PMID 22315306 DOI: 10.2337/db11-0617  1
2012 Foster JA, Bunge J, Gilbert JA, Moore JH. Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life. Briefings in Bioinformatics. 13: 420-9. PMID 22308073 DOI: 10.1093/bib/bbr080  1
2012 McAllister TW, Tyler AL, Flashman LA, Rhodes CH, McDonald BC, Saykin AJ, Tosteson TD, Tsongalis GJ, Moore JH. Polymorphisms in the brain-derived neurotrophic factor gene influence memory and processing speed one month after brain injury. Journal of Neurotrauma. 29: 1111-8. PMID 22188054 DOI: 10.1089/neu.2011.1930  1
2012 Pechenick DA, Payne JL, Moore JH. The influence of assortativity on the robustness of signal-integration logic in gene regulatory networks. Journal of Theoretical Biology. 296: 21-32. PMID 22155134 DOI: 10.1016/j.jtbi.2011.11.029  1
2012 Mechanic LE, Chen HS, Amos CI, Chatterjee N, Cox NJ, Divi RL, Fan R, Harris EL, Jacobs K, Kraft P, Leal SM, McAllister K, Moore JH, Paltoo DN, Province MA, et al. Next generation analytic tools for large scale genetic epidemiology studies of complex diseases. Genetic Epidemiology. 36: 22-35. PMID 22147673 DOI: 10.1002/gepi.20652  1
2012 Karagas MR, Andrew AS, Nelson HH, Li Z, Punshon T, Schned A, Marsit CJ, Morris JS, Moore JH, Tyler AL, Gilbert-Diamond D, Guerinot ML, Kelsey KT. SLC39A2 and FSIP1 polymorphisms as potential modifiers of arsenic-related bladder cancer. Human Genetics. 131: 453-61. PMID 21947419 DOI: 10.1007/s00439-011-1090-x  1
2012 Askland K, Read C, O'Connell C, Moore JH. Ion channels and schizophrenia: a gene set-based analytic approach to GWAS data for biological hypothesis testing. Human Genetics. 131: 373-91. PMID 21866342 DOI: 10.1007/s00439-011-1082-x  0.52
2011 Darabos C, Di Cunto F, Tomassini M, Moore JH, Provero P, Giacobini M. Additive functions in boolean models of gene regulatory network modules Plos One. 6. PMID 22132067 DOI: 10.1371/journal.pone.0025110  1
2011 Hu T, Sinnott-Armstrong NA, Kiralis JW, Andrew AS, Karagas MR, Moore JH. Characterizing genetic interactions in human disease association studies using statistical epistasis networks. Bmc Bioinformatics. 12: 364. PMID 21910885 DOI: 10.1186/1471-2105-12-364  1
2011 Penrod NM, Cowper-Sal-lari R, Moore JH. Systems genetics for drug target discovery. Trends in Pharmacological Sciences. 32: 623-30. PMID 21862141 DOI: 10.1016/j.tips.2011.07.002  1
2011 Himmelstein DS, Greene CS, Moore JH. Evolving hard problems: Generating human genetics datasets with a complex etiology. Biodata Mining. 4: 21. PMID 21736753 DOI: 10.1186/1756-0381-4-21  1
2011 Gilbert-Diamond D, Moore JH. Analysis of gene-gene interactions. Current Protocols in Human Genetics. Unit1.14. PMID 21735376 DOI: 10.1002/0471142905.hg0114s70  1
2011 Coffey CS, Asselbergs FW, Hebert PR, Hillege HL, Li Q, Moore JH, van Gilst WH. The Association of the Metabolic Syndrome with PAI-1 and t-PA Levels. Cardiology Research and Practice. 2011: 541467. PMID 21559217 DOI: 10.4061/2011/541467  0.72
2011 Penrod NM, Poku KA, Vaughan DE, Vaughn DE, Asselbergs FW, Brown NJ, Moore JH, Williams SM. Epistatic interactions in genetic regulation of t-PA and PAI-1 levels in a Ghanaian population. Plos One. 6: e16639. PMID 21304999 DOI: 10.1371/journal.pone.0016639  1
2011 Cowper-Sal lari R, Cole MD, Karagas MR, Lupien M, Moore JH. Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 3: 513-26. PMID 21197657 DOI: 10.1002/wsbm.132  1
2011 Wishart HA, Roth RM, Saykin AJ, Rhodes CH, Tsongalis GJ, Pattin KA, Moore JH, McAllister TW. COMT Val158Met Genotype and Individual Differences in Executive Function in Healthy Adults. Journal of the International Neuropsychological Society : Jins. 17: 174-80. PMID 21144101 DOI: 10.1017/S1355617710001402  1
2011 Gui J, Andrew AS, Andrews P, Nelson HM, Kelsey KT, Karagas MR, Moore JH. A robust multifactor dimensionality reduction method for detecting gene-gene interactions with application to the genetic analysis of bladder cancer susceptibility. Annals of Human Genetics. 75: 20-8. PMID 21091664 DOI: 10.1111/j.1469-1809.2010.00624.x  1
2011 Gui J, Moore JH, Kelsey KT, Marsit CJ, Karagas MR, Andrew AS. A novel survival multifactor dimensionality reduction method for detecting gene-gene interactions with application to bladder cancer prognosis. Human Genetics. 129: 101-10. PMID 20981448 DOI: 10.1007/s00439-010-0905-5  1
2010 Pattin KA, Moore JH. Genome-wide association studies for the identification of biomarkers in metabolic diseases. Expert Opinion On Medical Diagnostics. 4: 39-51. PMID 23496109 DOI: 10.1517/17530050903322245  1
2010 Gui J, Andrew AS, Andrews P, Nelson HM, Kelsey KT, Karagas MR, Moore JH. A simple and computationally efficient sampling approach to covariate adjustment for multifactor dimensionality reduction analysis of epistasis. Human Heredity. 70: 219-25. PMID 20924193 DOI: 10.1159/000319175  1
2010 Sloan CD, Shen L, West JD, Wishart HA, Flashman LA, Rabin LA, Santulli RB, Guerin SJ, Rhodes CH, Tsongalis GJ, McAllister TW, Ahles TA, Lee SL, Moore JH, Saykin AJ. Genetic pathway-based hierarchical clustering analysis of older adults with cognitive complaints and amnestic mild cognitive impairment using clinical and neuroimaging phenotypes. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 153: 1060-9. PMID 20468060 DOI: 10.1002/ajmg.b.31078  1
2010 Shen L, Kim S, Risacher SL, Nho K, Swaminathan S, West JD, Foroud T, Pankratz N, Moore JH, Sloan CD, Huentelman MJ, Craig DW, Dechairo BM, Potkin SG, Jack CR, et al. Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort. Neuroimage. 53: 1051-63. PMID 20100581 DOI: 10.1016/j.neuroimage.2010.01.042  1
2010 Greene CS, Sinnott-Armstrong NA, Himmelstein DS, Park PJ, Moore JH, Harris BT. Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS. Bioinformatics (Oxford, England). 26: 694-5. PMID 20081222 DOI: 10.1093/bioinformatics/btq009  1
2010 Greene CS, Himmelstein DS, Nelson HH, Kelsey KT, Williams SM, Andrew AS, Karagas MR, Moore JH. Enabling personal genomics with an explicit test of epistasis. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 327-36. PMID 19908385  1
2009 Greene CS, White BC, Moore JH. Sensible Initialization Using Expert Knowledge for Genome-Wide Analysis of Epistasis Using Genetic Programming. Genetic and Evolutionary Computation Conference : [Proceedings] / Sponsored by Acm Sigevo. Genetic and Evolutionary Computation Conference. 2009: 1289-1296. PMID 21197156 DOI: 10.1109/CEC.2009.4983093  1
2009 Pattin KA, Moore JH. Role for protein-protein interaction databases in human genetics. Expert Review of Proteomics. 6: 647-59. PMID 19929610 DOI: 10.1586/epr.09.86  1
2009 Dervieux T, Wessels JA, van der Straaten T, Penrod N, Moore JH, Guchelaar HJ, Kremer JM. Gene-gene interactions in folate and adenosine biosynthesis pathways affect methotrexate efficacy and tolerability in rheumatoid arthritis. Pharmacogenetics and Genomics. 19: 935-44. PMID 19858780 DOI: 10.1097/FPC.0b013e32833315d1  0.32
2009 Greene CS, Penrod NM, Kiralis J, Moore JH. Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions. Biodata Mining. 2: 5. PMID 19772641 DOI: 10.1186/1756-0381-2-5  1
2009 Sloan CD, Andrew AD, Duell EJ, Williams SM, Karagas MR, Moore JH. Genetic population structure analysis in New Hampshire reveals Eastern European ancestry. Plos One. 4: e6928. PMID 19738909 DOI: 10.1371/journal.pone.0006928  1
2009 Trask HW, Cowper-Sal-lari R, Sartor MA, Gui J, Heath CV, Renuka J, Higgins AJ, Andrews P, Korc M, Moore JH, Tomlinson CR. Microarray analysis of cytoplasmic versus whole cell RNA reveals a considerable number of missed and false positive mRNAs. Rna (New York, N.Y.). 15: 1917-28. PMID 19703940 DOI: 10.1261/rna.1677409  1
2009 Sinnott-Armstrong NA, Greene CS, Cancare F, Moore JH. Accelerating epistasis analysis in human genetics with consumer graphics hardware. Bmc Research Notes. 2: 149. PMID 19630950 DOI: 10.1186/1756-0500-2-149  1
2009 Greene CS, Penrod NM, Williams SM, Moore JH. Failure to replicate a genetic association may provide important clues about genetic architecture. Plos One. 4: e5639. PMID 19503614 DOI: 10.1371/journal.pone.0005639  1
2009 Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, Froment A, Hirbo JB, Awomoyi AA, Bodo JM, Doumbo O, Ibrahim M, Juma AT, Kotze MJ, Lema G, Moore JH, et al. The genetic structure and history of Africans and African Americans. Science (New York, N.Y.). 324: 1035-44. PMID 19407144 DOI: 10.1126/science.1172257  1
2009 Tyler AL, Asselbergs FW, Williams SM, Moore JH. Shadows of complexity: what biological networks reveal about epistasis and pleiotropy. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 220-7. PMID 19204994 DOI: 10.1002/bies.200800022  1
2009 Sloan CD, Duell EJ, Shi X, Irwin R, Andrew AS, Williams SM, Moore JH. Ecogeographic genetic epidemiology. Genetic Epidemiology. 33: 281-9. PMID 19025788 DOI: 10.1002/gepi.20386  1
2009 Pattin KA, White BC, Barney N, Gui J, Nelson HH, Kelsey KT, Andrew AS, Karagas MR, Moore JH. A computationally efficient hypothesis testing method for epistasis analysis using multifactor dimensionality reduction. Genetic Epidemiology. 33: 87-94. PMID 18671250 DOI: 10.1002/gepi.20360  1
2008 Sloan CD, Sayarath V, Moore JH. Systems genetics of alcoholism Alcohol Research and Health. 31: 14-25. PMID 23584748  1
2008 Urbanowicz RJ, White BC, Moore JH. Mask Functions for the Symbolic Modeling of Epistasis Using Genetic Programming. Genetic and Evolutionary Computation Conference : [Proceedings] / Sponsored by Acm Sigevo. Genetic and Evolutionary Computation Conference. 2008: 339-346. PMID 23019565  1
2008 Asselbergs FW, Pattin K, Snieder H, Hillege HL, van Gilst WH, Moore JH. Genetic architecture of tissue-type plasminogen activator and plasminogen activator inhibitor-1. Seminars in Thrombosis and Hemostasis. 34: 562-8. PMID 19085655 DOI: 10.1055/s-0028-1103367  0.72
2008 Aguilar-Ruiz JS, Moore JH, Ritchie MD. Filling the gap between biology and computer science. Biodata Mining. 1: 1. PMID 18822148 DOI: 10.1186/1756-0381-1-1  0.92
2008 McAllister TW, Flashman LA, Harker Rhodes C, Tyler AL, Moore JH, Saykin AJ, McDonald BC, Tosteson TD, Tsongalis GJ. Single nucleotide polymorphisms in ANKK1 and the dopamine D2 receptor gene affect cognitive outcome shortly after traumatic brain injury: a replication and extension study. Brain Injury. 22: 705-14. PMID 18698520 DOI: 10.1080/02699050802263019  1
2008 Beretta L, Cappiello F, Moore JH, Barili M, Greene CS, Scorza R. Ability of epistatic interactions of cytokine single-nucleotide polymorphisms to predict susceptibility to disease subsets in systemic sclerosis patients. Arthritis and Rheumatism. 59: 974-83. PMID 18576303 DOI: 10.1002/art.23836  1
2008 Pattin KA, Moore JH. Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases. Human Genetics. 124: 19-29. PMID 18551320 DOI: 10.1007/s00439-008-0522-8  1
2008 Reif DM, McKinney BA, Motsinger AA, Chanock SJ, Edwards KM, Rock MT, Moore JH, Crowe JE. Genetic basis for adverse events after smallpox vaccination. The Journal of Infectious Diseases. 198: 16-22. PMID 18454680 DOI: 10.1086/588670  0.72
2007 Ritchie MD, Motsinger AA, Bush WS, Coffey CS, Moore JH. Genetic Programming Neural Networks: A Powerful Bioinformatics Tool for Human Genetics. Applied Soft Computing. 7: 471-479. PMID 20948988 DOI: 10.1016/j.asoc.2006.01.013  0.92
2007 Reif DM, Israel MA, Moore JH. Exploratory Visual Analysis of statistical results from microarray experiments comparing high and low grade glioma. Cancer Informatics. 5: 19-24. PMID 19390666  1
2007 Williams SM, Canter JA, Crawford DC, Moore JH, Ritchie MD, Haines JL. Problems with genome-wide association studies. Science (New York, N.Y.). 316: 1840-2. PMID 17605173  0.92
2007 Velez DR, White BC, Motsinger AA, Bush WS, Ritchie MD, Williams SM, Moore JH. A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction. Genetic Epidemiology. 31: 306-15. PMID 17323372 DOI: 10.1002/gepi.20211  1
2007 Nordgard SH, Ritchie MD, Jensrud SD, Motsinger AA, Alnaes GI, Lemmon G, Berg M, Geisler S, Moore JH, Lønning PE, Børresen-Dale AL, Kristensen VN. ABCB1 and GST polymorphisms associated with TP53 status in breast cancer. Pharmacogenetics and Genomics. 17: 127-36. PMID 17301692 DOI: 10.1097/FPC.0b013e328011abaa  0.92
2007 Tsai CT, Hwang JJ, Ritchie MD, Moore JH, Chiang FT, Lai LP, Hsu KL, Tseng CD, Lin JL, Tseng YZ. Renin-angiotensin system gene polymorphisms and coronary artery disease in a large angiographic cohort: detection of high order gene-gene interaction. Atherosclerosis. 195: 172-80. PMID 17118372 DOI: 10.1016/j.atherosclerosis.2006.09.014  0.92
2006 McKinney BA, Reif DM, Rock MT, Edwards KM, Kingsmore SF, Moore JH, Crowe JE. Cytokine expression patterns associated with systemic adverse events following smallpox immunization. The Journal of Infectious Diseases. 194: 444-53. PMID 16845627 DOI: 10.1086/505503  0.68
2006 McKinney BA, Reif DM, Ritchie MD, Moore JH. Machine learning for detecting gene-gene interactions: a review. Applied Bioinformatics. 5: 77-88. PMID 16722772  0.92
2006 Reif DM, Moore JH. Visual analysis of statistical results from microarray studies of human breast cancer. Oncology Reports. 15: 1043-7. PMID 16525698  0.68
2006 Sanada H, Yatabe J, Midorikawa S, Hashimoto S, Watanabe T, Moore JH, Ritchie MD, Williams SM, Pezzullo JC, Sasaki M, Eisner GM, Jose PA, Felder RA. Single-nucleotide polymorphisms for diagnosis of salt-sensitive hypertension. Clinical Chemistry. 52: 352-60. PMID 16439609 DOI: 10.1373/clinchem.2005.059139  0.92
2005 Wilke RA, Reif DM, Moore JH. Combinatorial pharmacogenetics. Nature Reviews. Drug Discovery. 4: 911-8. PMID 16264434 DOI: 10.1038/nrd1874  0.68
2005 Reif DM, Dudek SM, Shaffer CM, Wang J, Moore JH. Exploratory visual analysis of pharmacogenomic results. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 296-307. PMID 15759635  1
2004 Moore JH, Hahn LW, Ritchie MD, Thornton TA, White BC. Routine Discovery of Complex Genetic Models using Genetic Algorithms. Applied Soft Computing. 4: 79-86. PMID 20948983 DOI: 10.1016/j.asoc.2003.08.003  1
2004 Reif DM, White BC, Moore JH. Integrated analysis of genetic, genomic and proteomic data. Expert Review of Proteomics. 1: 67-75. PMID 15966800 DOI: 10.1586/14789450.1.1.67  1
2004 Williams SM, Ritchie MD, Phillips JA, Dawson E, Prince M, Dzhura E, Willis A, Semenya A, Summar M, White BC, Addy JH, Kpodonu J, Wong LJ, Felder RA, Jose PA, ... Moore JH, et al. Multilocus analysis of hypertension: a hierarchical approach. Human Heredity. 57: 28-38. PMID 15133310 DOI: 10.1159/000077387  1
2004 Coffey CS, Hebert PR, Ritchie MD, Krumholz HM, Gaziano JM, Ridker PM, Brown NJ, Vaughan DE, Moore JH. An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene interactions on risk of myocardial infarction: the importance of model validation. Bmc Bioinformatics. 5: 49. PMID 15119966 DOI: 10.1186/1471-2105-5-49  0.92
2004 Moore JH, Ritchie MD. STUDENTJAMA. The challenges of whole-genome approaches to common diseases. Jama. 291: 1642-3. PMID 15069055 DOI: 10.1001/jama.291.13.1642  0.92
2004 Tsai CT, Lai LP, Lin JL, Chiang FT, Hwang JJ, Ritchie MD, Moore JH, Hsu KL, Tseng CD, Liau CS, Tseng YZ. Renin-angiotensin system gene polymorphisms and atrial fibrillation. Circulation. 109: 1640-6. PMID 15023884 DOI: 10.1161/01.CIR.0000124487.36586.26  0.92
2003 Moore JH, Thornton TA, Ritchie MD. Basic statistics. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Appendix 3M. PMID 18428338 DOI: 10.1002/0471142905.hga03ms37  1
2003 Ritchie MD, White BC, Parker JS, Hahn LW, Moore JH. Optimization of neural network architecture using genetic programming improves detection and modeling of gene-gene interactions in studies of human diseases. Bmc Bioinformatics. 4: 28. PMID 12846935 DOI: 10.1186/1471-2105-4-28  1
2003 Hahn LW, Ritchie MD, Moore JH. Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics (Oxford, England). 19: 376-82. PMID 12584123  0.92
2003 Ritchie MD, Hahn LW, Moore JH. Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity. Genetic Epidemiology. 24: 150-7. PMID 12548676 DOI: 10.1002/gepi.10218  0.92
2002 Moore JH, Hahn LW, Ritchie MD, Thornton TA, White BC. Application of Genetic Algorithms to the Discovery of Complex Models for Simulation Studies in Human Genetics. Proceedings of the Genetic and Evolutionary Computation Conference / Gecco. Genetic and Evolutionary Computation Conference. 2002: 1150-1155. PMID 23413413  0.92
Show low-probability matches.