| Year |
Citation |
Score |
| 2024 |
Ratnasiri K, Zheng H, Toh J, Yao Z, Duran V, Donato M, Roederer M, Kamath M, Todd JM, Gagne M, Foulds KE, Francica JR, Corbett KS, Douek DC, Seder RA, ... ... Khatri P, et al. Systems immunology of transcriptional responses to viral infection identifies conserved antiviral pathways across macaques and humans. Cell Reports. 43: 113706. PMID 38294906 DOI: 10.1016/j.celrep.2024.113706 |
0.551 |
|
| 2023 |
Ty M, Sun S, Callaway PC, Rek J, Press KD, van der Ploeg K, Nideffer J, Hu Z, Klemm S, Greenleaf W, Donato M, Tukwasibwe S, Arinaitwe E, Nankya F, Musinguzi K, ... ... Khatri P, et al. Malaria-driven expansion of adaptive-like functional CD56-negative NK cells correlates with clinical immunity to malaria. Science Translational Medicine. 15: eadd9012. PMID 36696483 DOI: 10.1126/scitranslmed.add9012 |
0.506 |
|
| 2022 |
Rao AM, Popper SJ, Gupta S, Davong V, Vaidya K, Chanthongthip A, Dittrich S, Robinson MT, Vongsouvath M, Mayxay M, Nawtaisong P, Karmacharya B, Thair SA, Bogoch I, Sweeney TE, ... ... Khatri P, et al. A robust host-response-based signature distinguishes bacterial and viral infections across diverse global populations. Cell Reports. Medicine. 3: 100842. PMID 36543117 DOI: 10.1016/j.xcrm.2022.100842 |
0.682 |
|
| 2022 |
Ratnasiri K, Wilk AJ, Lee MJ, Khatri P, Blish CA. Single-cell RNA-seq methods to interrogate virus-host interactions. Seminars in Immunopathology. 1-19. PMID 36414692 DOI: 10.1007/s00281-022-00972-2 |
0.757 |
|
| 2022 |
Hagey RJ, Elazar M, Pham EA, Tian S, Ben-Avi L, Bernardin-Souibgui C, Yee MF, Moreira FR, Rabinovitch MV, Meganck RM, Fram B, Beck A, Gibson SA, Lam G, Devera J, ... ... Khatri P, et al. Programmable antivirals targeting critical conserved viral RNA secondary structures from influenza A virus and SARS-CoV-2. Nature Medicine. PMID 35982307 DOI: 10.1038/s41591-022-01908-x |
0.526 |
|
| 2022 |
Anahtar M, Chan LW, Ko H, Rao A, Soleimany AP, Khatri P, Bhatia SN. Host protease activity classifies pneumonia etiology. Proceedings of the National Academy of Sciences of the United States of America. 119: e2121778119. PMID 35696579 DOI: 10.1073/pnas.2121778119 |
0.678 |
|
| 2022 |
Liu YE, Saul S, Rao AM, Robinson ML, Agudelo Rojas OL, Sanz AM, Verghese M, Solis D, Sibai M, Huang CH, Sahoo MK, Gelvez RM, Bueno N, Estupiñan Cardenas MI, Villar Centeno LA, ... ... Khatri P, et al. An 8-gene machine learning model improves clinical prediction of severe dengue progression. Genome Medicine. 14: 33. PMID 35346346 DOI: 10.1186/s13073-022-01034-w |
0.659 |
|
| 2022 |
Buturovic L, Zheng H, Tang B, Lai K, Kuan WS, Gillett M, Santram R, Shojaei M, Almansa R, Nieto JÁ, Muñoz S, Herrero C, Antonakos N, Koufargyris P, Kontogiorgi M, ... ... Khatri P, et al. A 6-mRNA host response classifier in whole blood predicts outcomes in COVID-19 and other acute viral infections. Scientific Reports. 12: 889. PMID 35042868 DOI: 10.1038/s41598-021-04509-9 |
0.685 |
|
| 2021 |
Zheng H, Rao AM, Dermadi D, Toh J, Murphy Jones L, Donato M, Liu Y, Su Y, Dai CL, Kornilov SA, Karagiannis M, Marantos T, Hasin-Brumshtein Y, He YD, Giamarellos-Bourboulis EJ, ... ... Khatri P, et al. Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses. Immunity. PMID 33765435 DOI: 10.1016/j.immuni.2021.03.002 |
0.683 |
|
| 2020 |
Arunachalam PS, Wimmers F, Mok CKP, Perera RAPM, Scott M, Hagan T, Sigal N, Feng Y, Bristow L, Tak-Yin Tsang O, Wagh D, Coller J, Pellegrini KL, Kazmin D, Alaaeddine G, ... ... Khatri P, et al. Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. Science (New York, N.Y.). PMID 32788292 DOI: 10.1126/Science.Abc6261 |
0.314 |
|
| 2020 |
Haynes WA, Haddon DJ, Diep V, Khatri A, Bongen E, Yiu G, Balboni I, Bolen CR, Mao R, Utz PJ, Khatri P. Integrated, multi-cohort analysis reveals unified signature of systemic lupus erythematosus. Jci Insight. PMID 31971918 DOI: 10.1172/Jci.Insight.122312 |
0.361 |
|
| 2019 |
Schultz BJ, Sweeney T, DeBaun MR, Remmel M, Midic U, Khatri P, Gardner MJ. Pilot study of a novel serum mRNA gene panel for diagnosis of acute septic arthritis. World Journal of Orthopedics. 10: 424-433. PMID 31908991 DOI: 10.5312/Wjo.V10.I12.424 |
0.319 |
|
| 2019 |
Bongen E, Lucian H, Khatri A, Fragiadakis GK, Bjornson ZB, Nolan GP, Utz PJ, Khatri P. Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection. Cell Reports. 29: 1961-1973.e4. PMID 31722210 DOI: 10.1016/J.Celrep.2019.10.019 |
0.32 |
|
| 2019 |
Le Gars M, Seiler C, Kay AW, Bayless NL, Starosvetsky E, Moore L, Shen-Orr SS, Aziz N, Khatri P, Dekker CL, Swan GE, Davis MM, Holmes S, Blish CA. Pregnancy-Induced Alterations in NK Cell Phenotype and Function. Frontiers in Immunology. 10: 2469. PMID 31708922 DOI: 10.3389/Fimmu.2019.02469 |
0.554 |
|
| 2019 |
Cheung P, Khatri P, Utz PJ, Kuo AJ. Single-cell technologies - studying rheumatic diseases one cell at a time. Nature Reviews. Rheumatology. PMID 31065108 DOI: 10.1038/S41584-019-0220-Z |
0.313 |
|
| 2019 |
Warsinske H, Vashisht R, Khatri P. Host-response-based gene signatures for tuberculosis diagnosis: A systematic comparison of 16 signatures. Plos Medicine. 16: e1002786. PMID 31013272 DOI: 10.1371/Journal.Pmed.1002786 |
0.39 |
|
| 2019 |
Higdon LE, Schaffert S, Khatri P, Maltzman JS. Single cell immune profiling in transplantation research. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. PMID 30768832 DOI: 10.1111/Ajt.15316 |
0.364 |
|
| 2019 |
Robinson M, Sweeney TE, Barouch-Bentov R, Sahoo MK, Kalesinskas L, Vallania F, Sanz AM, Ortiz-Lasso E, Albornoz LL, Rosso F, Montoya JG, Pinsky BA, Khatri P, Einav S. A 20-Gene Set Predictive of Progression to Severe Dengue. Cell Reports. 26: 1104-1111.e4. PMID 30699342 DOI: 10.1016/J.Celrep.2019.01.033 |
0.392 |
|
| 2018 |
Warsinske HC, Rao AM, Moreira FMF, Santos PCP, Liu AB, Scott M, Malherbe ST, Ronacher K, Walzl G, Winter J, Sweeney TE, Croda J, Andrews JR, Khatri P. Assessment of Validity of a Blood-Based 3-Gene Signature Score for Progression and Diagnosis of Tuberculosis, Disease Severity, and Treatment Response. Jama Network Open. 1: e183779. PMID 30646264 DOI: 10.1001/jamanetworkopen.2018.3779 |
0.664 |
|
| 2018 |
Roy Chowdhury R, Vallania F, Yang Q, Lopez Angel CJ, Darboe F, Penn-Nicholson A, Rozot V, Nemes E, Malherbe ST, Ronacher K, Walzl G, Hanekom W, Davis MM, Winter J, Chen X, ... ... Khatri P, et al. A multi-cohort study of the immune factors associated with M. tuberculosis infection outcomes. Nature. PMID 30135583 DOI: 10.1038/S41586-018-0439-X |
0.32 |
|
| 2018 |
Cheung P, Vallania F, Dvorak M, Chang SE, Schaffert S, Donato M, Rao A, Mao R, Utz PJ, Khatri P, Kuo AJ. Single-cell epigenetics - Chromatin modification atlas unveiled by mass cytometry. Clinical Immunology (Orlando, Fla.). PMID 29960011 DOI: 10.1016/J.Clim.2018.06.009 |
0.674 |
|
| 2018 |
Tomczak A, Mortensen JM, Winnenburg R, Liu C, Alessi DT, Swamy V, Vallania F, Lofgren S, Haynes W, Shah NH, Musen MA, Khatri P. Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations. Scientific Reports. 8: 5115. PMID 29572502 DOI: 10.1038/S41598-018-23395-2 |
0.375 |
|
| 2018 |
Dela Cruz CS, Wunderink RG, Christiani DC, Cormier SA, Crothers K, Doerschuk CM, Evans SE, Goldstein DR, Khatri P, Kobzik L, Kolls JK, Levy BD, Metersky ML, Niederman MS, Nusrat R, et al. Future Research Directions in Pneumonia: NHLBI Working Group Report. American Journal of Respiratory and Critical Care Medicine. PMID 29546996 DOI: 10.1164/Rccm.201801-0139Ws |
0.315 |
|
| 2018 |
Sweeney TE, Perumal TM, Henao R, Nichols M, Howrylak JA, Choi AM, Bermejo-Martin JF, Almansa R, Tamayo E, Davenport EE, Burnham KL, Hinds CJ, Knight JC, Woods CW, Kingsmore SF, ... ... Khatri P, et al. A community approach to mortality prediction in sepsis via gene expression analysis. Nature Communications. 9: 694. PMID 29449546 DOI: 10.1038/S41467-018-03078-2 |
0.315 |
|
| 2018 |
Yang Z, Zhang J, Jiang D, Khatri P, Solow-Cordero DE, Toesca DAS, Koumenis C, Denko NC, Giaccia AJ, Le QT, Koong AC. A Human Genome-wide RNAi Screen Reveals Diverse Modulators that Mediate IRE1α-XBP1 Activation. Molecular Cancer Research : McR. PMID 29440447 DOI: 10.1158/1541-7786.Mcr-17-0307 |
0.384 |
|
| 2018 |
Azad TD, Donato M, Heylen L, Liu AB, Shen-Orr SS, Sweeney TE, Maltzman JS, Naesens M, Khatri P. Inflammatory macrophage-associated 3-gene signature predicts subclinical allograft injury and graft survival. Jci Insight. 3. PMID 29367465 DOI: 10.1172/Jci.Insight.95659 |
0.332 |
|
| 2018 |
Haynes WA, Tomczak A, Khatri P. Gene annotation bias impedes biomedical research. Scientific Reports. 8: 1362. PMID 29358745 DOI: 10.1038/S41598-018-19333-X |
0.338 |
|
| 2018 |
Chae H, Murphy LC, Donato M, Lee AG, Sweet-Cordero EA, Abidi P, Bittencourt H, Lacayo NJ, Dahl GVH, Aftandilian C, Davis KL, Huang M, Sumarsono N, Redell M, Fu CH, ... ... Khatri P, et al. Comparison of the Transcriptomic Signature of Pediatric Vs. Adult CML and Normal Bone Marrow Stem Cells Blood. 132: 4246-4246. DOI: 10.1182/Blood-2018-99-119974 |
0.345 |
|
| 2018 |
Nie W, Rawling D, Eshoo M, Khatri P, Romanowsky J, Liesenfeld O, Sweeney T. 2016. TaqMan Multiplex PCR of a Seven-Gene Host Biomarker to Discriminate Bacterial from Viral Infections Open Forum Infectious Diseases. 5: S587-S587. DOI: 10.1093/Ofid/Ofy210.1672 |
0.345 |
|
| 2018 |
Robinson ML, Sweeney TE, Barouch-Bentov R, Sahoo MK, Sanz AM, Pu S, Ortiz E, Albornoz L, Suarez FR, Montoya JG, Pinsky B, Khatri P, Einav S. 2565. A Novel Prognostic Gene Set for the Prediction of Severe Dengue Open Forum Infectious Diseases. 5: S72-S72. DOI: 10.1093/Ofid/Ofy209.173 |
0.367 |
|
| 2018 |
Warsinske H, Rao A, Moreira FMF, Santos PCPD, Liu A, Scott M, Malherbe S, Ronacher K, Walzl G, Winter J, Sweeney TE, Croda J, Andrews JR, Khatri P. 119. Prospective Validation of a 3-Gene Signature for Tuberculosis Diagnosis, Predicting Progression and Evaluating Treatment Response Open Forum Infectious Diseases. 5: S5-S5. DOI: 10.1093/Ofid/Ofy209.010 |
0.692 |
|
| 2017 |
Sweeney TE, Lofgren S, Khatri P, Rogers AJ. Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury. American Journal of Respiratory Cell and Molecular Biology. PMID 28324666 DOI: 10.1165/Rcmb.2016-0395Oc |
0.334 |
|
| 2017 |
Vallejo A, Perurena N, Guruceaga E, Mazur PK, Martinez-Canarias S, Zandueta C, Valencia K, Arricibita A, Gwinn D, Sayles LC, Chuang CH, Guembe L, Bailey P, Chang DK, Biankin A, ... ... Khatri P, et al. An integrative approach unveils FOSL1 as an oncogene vulnerability in KRAS-driven lung and pancreatic cancer. Nature Communications. 8: 14294. PMID 28220783 DOI: 10.1038/Ncomms14294 |
0.301 |
|
| 2016 |
Sweeney TE, Khatri P. Benchmarking Sepsis Gene Expression Diagnostics Using Public Data. Critical Care Medicine. PMID 27681387 DOI: 10.1097/Ccm.0000000000002021 |
0.38 |
|
| 2016 |
Turner BE, Jiang D, Khatri P, Chang DT, Koong AC. Multicohort Analysis of Effect of Ionizing Radiation on Transcription Identifies Conserved Gene Signature and Clinically Relevant Novel Radiosensitizers. International Journal of Radiation Oncology, Biology, Physics. 96: E590. PMID 27675099 DOI: 10.1016/J.Ijrobp.2016.06.2106 |
0.311 |
|
| 2016 |
Sweeney TE, Haynes WA, Vallania F, Ioannidis JP, Khatri P. Methods to increase reproducibility in differential gene expression via meta-analysis. Nucleic Acids Research. PMID 27634930 DOI: 10.1093/Nar/Gkw797 |
0.353 |
|
| 2016 |
Sweeney TE, Wong HR, Khatri P. Robust classification of bacterial and viral infections via integrated host gene expression diagnostics. Science Translational Medicine. 8: 346ra91. PMID 27384347 DOI: 10.1126/Scitranslmed.Aaf7165 |
0.354 |
|
| 2016 |
Sweeney TE, Braviak L, Tato CM, Khatri P. Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis. The Lancet. Respiratory Medicine. 4: 213-24. PMID 26907218 DOI: 10.1016/S2213-2600(16)00048-5 |
0.367 |
|
| 2015 |
Andres-Terre M, McGuire HM, Pouliot Y, Bongen E, Sweeney TE, Tato CM, Khatri P. Integrated, Multi-cohort Analysis Identifies Conserved Transcriptional Signatures across Multiple Respiratory Viruses. Immunity. 43: 1199-211. PMID 26682989 DOI: 10.1016/J.Immuni.2015.11.003 |
0.325 |
|
| 2015 |
Sweeney TE, Khatri P. Comprehensive Validation of the FAIM3:PLAC8 Ratio in Time-matched Public Gene Expression Data. American Journal of Respiratory and Critical Care Medicine. 192: 1260-1. PMID 26568247 DOI: 10.1164/Rccm.201507-1321Le |
0.345 |
|
| 2015 |
Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA. The center for expanded data annotation and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26112029 DOI: 10.1093/Jamia/Ocv048 |
0.318 |
|
| 2015 |
Sweeney TE, Shidham A, Wong HR, Khatri P. A comprehensive time-course-based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set. Science Translational Medicine. 7: 287ra71. PMID 25972003 DOI: 10.1126/Scitranslmed.Aaa5993 |
0.379 |
|
| 2015 |
Mazur PK, Reynoird N, Khatri P, Butte AJ, Wilkinson A, Garcia B, Liu S, Vermeulen M, Jansen PWTC, Tummino PJ, Kruger RG, Aller GSV, Barbash O, Huddleston M, Gozani O, et al. Abstract A23: SMYD3 links methylation of MAP3K2 to Ras-driven tumors Cancer Research. 75. DOI: 10.1158/1538-7445.Panca2014-A23 |
0.483 |
|
| 2015 |
Januszyk M, Jahchan N, Khatri P, Rennert RC, Sorkin M, Sage J, Longaker MT, Butte AJ, Gurtner GC. Abstract 172 Plastic and Reconstructive Surgery. 135: 120-121. DOI: 10.1097/01.Prs.0000465620.23775.46 |
0.414 |
|
| 2014 |
Li MD, Burns TC, Morgan AA, Khatri P. Integrated multi-cohort transcriptional meta-analysis of neurodegenerative diseases. Acta Neuropathologica Communications. 2: 93. PMID 25187168 DOI: 10.1186/S40478-014-0093-Y |
0.307 |
|
| 2014 |
Mazur PK, Reynoird N, Khatri P, Jansen PW, Wilkinson AW, Liu S, Barbash O, Van Aller GS, Huddleston M, Dhanak D, Tummino PJ, Kruger RG, Garcia BA, Butte AJ, Vermeulen M, et al. SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer. Nature. 510: 283-7. PMID 24847881 DOI: 10.1038/Nature13320 |
0.477 |
|
| 2014 |
Chen R, Khatri P, Mazur PK, Polin M, Zheng Y, Vaka D, Hoang CD, Shrager J, Xu Y, Vicent S, Butte AJ, Sweet-Cordero EA. A meta-analysis of lung cancer gene expression identifies PTK7 as a survival gene in lung adenocarcinoma. Cancer Research. 74: 2892-902. PMID 24654231 DOI: 10.1158/0008-5472.Can-13-2775 |
0.539 |
|
| 2014 |
Jahchan NS, Dudley JT, Mazur PK, Flores N, Yang D, Palmerton A, Zmoos A, Vaka D, Tran KQt, Zhou M, Krasinska K, Riess JW, Neal JW, Khatri P, Park KS, et al. Abstract 4610: A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors Cancer Research. 74: 4610-4610. DOI: 10.1158/1538-7445.Am2014-4610 |
0.503 |
|
| 2014 |
Jahchan N, Joel D, Mazur P, Neal J, Khatri P, Butte A, Sage J. Abstract IA02: A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer. Clinical Cancer Research. 20: IA02-IA02. DOI: 10.1158/1078-0432.14AACRIASLC-IA02 |
0.407 |
|
| 2014 |
Januszyk M, Rennert R, Sorkin M, Khatri P, Butte A, Gurtner G. Integration of Public Microarray Data with Single Cell Gene Expression Profiling Facilitates Identification of Transcriptionally-Defined Subpopulations in Small Cell Lung Cancer Journal of Surgical Research. 186: 558-559. DOI: 10.1016/J.Jss.2013.11.471 |
0.542 |
|
| 2014 |
Sweeney TE, Khatri P. Gene Expression Can Robustly Separate Infectious and Non-Infectious Inflammation Journal of the American College of Surgeons. 219: S43. DOI: 10.1016/J.Jamcollsurg.2014.07.096 |
0.34 |
|
| 2013 |
Khatri P, Roedder S, Kimura N, De Vusser K, Morgan AA, Gong Y, Fischbein MP, Robbins RC, Naesens M, Butte AJ, Sarwal MM. A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation. The Journal of Experimental Medicine. 210: 2205-21. PMID 24127489 DOI: 10.1084/Jem.20122709 |
0.5 |
|
| 2013 |
Jahchan NS, Dudley JT, Mazur PK, Flores N, Yang D, Palmerton A, Zmoos AF, Vaka D, Tran KQ, Zhou M, Krasinska K, Riess JW, Neal JW, Khatri P, Park KS, et al. A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors. Cancer Discovery. 3: 1364-77. PMID 24078773 DOI: 10.1158/2159-8290.Cd-13-0183 |
0.621 |
|
| 2013 |
Szabo LA, Khatri P, Liu X, Hu Z, Ling B, Butte AJ. Abstract B20: Identification of novel biomarkers for early detection of ovarian cancer Clinical Cancer Research. 19. DOI: 10.1158/1078-0432.Ovca13-B20 |
0.529 |
|
| 2012 |
Li L, Khatri P, Sigdel TK, Tran T, Ying L, Vitalone MJ, Chen A, Hsieh S, Dai H, Zhang M, Naesens M, Zarkhin V, Sansanwal P, Chen R, Mindrinos M, et al. A peripheral blood diagnostic test for acute rejection in renal transplantation. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 12: 2710-8. PMID 23009139 DOI: 10.1111/J.1600-6143.2012.04253.X |
0.53 |
|
| 2012 |
Vicent S, Sayles LC, Vaka D, Khatri P, Gevaert O, Chen R, Zheng Y, Gillespie AK, Clarke N, Xu Y, Shrager J, Hoang CD, Plevritis S, Butte AJ, Sweet-Cordero EA. Cross-species functional analysis of cancer-associated fibroblasts identifies a critical role for CLCF1 and IL-6 in non-small cell lung cancer in vivo. Cancer Research. 72: 5744-56. PMID 22962265 DOI: 10.1158/0008-5472.CAN-12-1097 |
0.449 |
|
| 2012 |
Khatri P, Sirota M, Butte AJ. Ten years of pathway analysis: current approaches and outstanding challenges. Plos Computational Biology. 8: e1002375. PMID 22383865 DOI: 10.1371/Journal.Pcbi.1002375 |
0.547 |
|
| 2012 |
Vicent S, Gillespie AK, Vakaa D, Khatri P, Chen R, Gevaert O, Clarke N, Plevritis S, Butte A, Sweet-Cordero A. Abstract A41: SOX11 transcriptionally regulates a cytokine-based gene signature in lung cancer-associated fibroblasts (LCAF) to promote tumor growth Clinical Cancer Research. 18: A41-A41. DOI: 10.1158/1078-0432.12Aacriaslc-A41 |
0.525 |
|
| 2012 |
Vitalone M, Khatri P, Hsieh S, Naesens M, Butte A, Sarwal M. Specific miRNAʼs and their Downstream Targets Are Associated with Acute Rejection in Pediatric Renal Allografts Transplantation Journal. 94: 116. DOI: 10.1097/00007890-201211271-00214 |
0.447 |
|
| 2011 |
Kim Y, Khatri P, Park K, Dudley J, Sage J, Butte A. Identification of serum protein biomarkers for small cell lung cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 29: e21005. PMID 28022393 DOI: 10.1200/Jco.2011.29.15_Suppl.E21005 |
0.597 |
|
| 2011 |
Naesens M, Khatri P, Li L, Sigdel TK, Vitalone MJ, Chen R, Butte AJ, Salvatierra O, Sarwal MM. Progressive histological damage in renal allografts is associated with expression of innate and adaptive immunity genes. Kidney International. 80: 1364-76. PMID 21881554 DOI: 10.1038/Ki.2011.245 |
0.505 |
|
| 2011 |
Khatri P, Sarwal MM, Butte AJ. Applications of translational bioinformatics in transplantation. Clinical Pharmacology and Therapeutics. 90: 323-7. PMID 21716268 DOI: 10.1038/Clpt.2011.120 |
0.479 |
|
| 2011 |
Roedder S, Vitalone M, Khatri P, Sarwal MM. Biomarkers in solid organ transplantation: establishing personalized transplantation medicine. Genome Medicine. 3: 37. PMID 21658299 DOI: 10.1186/Gm253 |
0.305 |
|
| 2010 |
Morgan AA, Khatri P, Jones RH, Sarwal MM, Butte AJ. Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. Bmc Bioinformatics. 11: S6. PMID 21044364 DOI: 10.1186/1471-2105-11-S9-S6 |
0.508 |
|
| 2010 |
Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM, Butte AJ. Cell type-specific gene expression differences in complex tissues. Nature Methods. 7: 287-9. PMID 20208531 DOI: 10.1038/Nmeth.1439 |
0.537 |
|
| 2010 |
Done B, Khatri P, Done A, Drăghici S. Predicting novel human gene ontology annotations using semantic analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 91-9. PMID 20150671 DOI: 10.1109/Tcbb.2008.29 |
0.737 |
|
| 2010 |
Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GS, Venugopal AK, Telikicherla D, Navarro JD, Mathivanan S, Pecquet C, Gollapudi SK, Tattikota SG, Mohan S, Padhukasahasram H, Subbannayya Y, ... ... Khatri P, et al. NetPath: a public resource of curated signal transduction pathways. Genome Biology. 11: R3. PMID 20067622 DOI: 10.1186/Gb-2010-11-1-R3 |
0.559 |
|
| 2010 |
Shen-Orr S, Gaidarski A, Tibshirani R, Khatri P, Davis M, Butte A. Extracting Cell-type-specific Gene Expression Differences from Complex Tissues Clinical Immunology. 135: S10. DOI: 10.1016/J.Clim.2010.03.037 |
0.502 |
|
| 2009 |
Khatri P, Sarwal MM. Using gene arrays in diagnosis of rejection. Current Opinion in Organ Transplantation. 14: 34-9. PMID 19337144 DOI: 10.1097/Mot.0B013E32831E13D0 |
0.339 |
|
| 2009 |
Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ, Kusanovic JP, Romero R. A novel signaling pathway impact analysis. Bioinformatics (Oxford, England). 25: 75-82. PMID 18990722 DOI: 10.1093/Bioinformatics/Btn577 |
0.607 |
|
| 2008 |
Voichiţa C, Khatri P, Drǎghici S. Identifying uncertainty regions in support vector machines using geometric margin and convex hulls Proceedings of the International Joint Conference On Neural Networks. 3319-3324. DOI: 10.1109/IJCNN.2008.4634269 |
0.736 |
|
| 2007 |
Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R. A systems biology approach for pathway level analysis. Genome Research. 17: 1537-45. PMID 17785539 DOI: 10.1101/Gr.6202607 |
0.773 |
|
| 2007 |
Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S. Onto-Tools: new additions and improvements in 2006. Nucleic Acids Research. 35: W206-11. PMID 17584796 DOI: 10.1093/Nar/Gkm327 |
0.766 |
|
| 2007 |
Khatri P, Draghici S, Tarca AL, Hassan SS, Romero R. A system biology approach for the steady-state analysis of gene signaling networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4756: 32-41. |
0.537 |
|
| 2007 |
Done B, Khatri P, Done A, Draghici S. Semantic analysis of genome annotations using weighting schemes 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 212-218. |
0.727 |
|
| 2006 |
Drăghici S, Sellamuthu S, Khatri P. Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinformatics (Oxford, England). 22: 2934-9. PMID 17068090 DOI: 10.1093/Bioinformatics/Btl372 |
0.56 |
|
| 2006 |
Khatri P, Desai V, Tarca AL, Sellamuthu S, Wildman DE, Romero R, Draghici S. New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Research. 34: W626-31. PMID 16845086 DOI: 10.1093/Nar/Gkl213 |
0.606 |
|
| 2006 |
Draghici S, Khatri P, Eklund AC, Szallasi Z. Reliability and reproducibility issues in DNA microarray measurements. Trends in Genetics : Tig. 22: 101-9. PMID 16380191 DOI: 10.1016/J.Tig.2005.12.005 |
0.576 |
|
| 2005 |
Khatri P, Drăghici S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics (Oxford, England). 21: 3587-95. PMID 15994189 DOI: 10.1093/Bioinformatics/Bti565 |
0.618 |
|
| 2005 |
Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S. Recent additions and improvements to the Onto-Tools. Nucleic Acids Research. 33: W762-5. PMID 15980579 DOI: 10.1093/Nar/Gki472 |
0.62 |
|
| 2005 |
Khatri P, Done B, Rao A, Done A, Draghici S. A semantic analysis of the annotations of the human genome. Bioinformatics (Oxford, England). 21: 3416-21. PMID 15955782 DOI: 10.1093/Bioinformatics/Bti538 |
0.765 |
|
| 2005 |
Draghici S, Khatri P, Liu Y, Chase KJ, Bode EA, Kulesh DA, Wasieloski LP, Norwood DA, Reifman J. Identification of genomic signatures for the design of assays for the detection and monitoring of anthrax threats. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 248-59. PMID 15759631 |
0.492 |
|
| 2005 |
Desai V, Khatri P, Done A, Fridman A, Tainsky M, Draghici S. A novel bioinformatics technique for predicting condition-specific transcription factor binding sites Proceedings of the 2005 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb '05. 2005. |
0.552 |
|
| 2004 |
Khatri P, Bhavsar P, Bawa G, Draghici S. Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Research. 32: W449-56. PMID 15215428 DOI: 10.1093/Nar/Gkh409 |
0.612 |
|
| 2003 |
Draghici S, Khatri P, Bhavsar P, Shah A, Krawetz SA, Tainsky MA. Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Research. 31: 3775-81. PMID 12824416 DOI: 10.1093/Nar/Gkg624 |
0.613 |
|
| 2003 |
Draghici S, Khatri P, Shah A, Tainsky MA. Assessing the functional bias of commercial microarrays using the onto-compare database. Biotechniques. 55-61. PMID 12664686 DOI: 10.2144/Mar03Draghici |
0.59 |
|
| 2003 |
Draghici S, Khatri P, Martins RP, Ostermeier GC, Krawetz SA. Global functional profiling of gene expression. Genomics. 81: 98-104. PMID 12620386 DOI: 10.1016/S0888-7543(02)00021-6 |
0.619 |
|
| 2002 |
Khatri P, Draghici S, Ostermeier GC, Krawetz SA. Profiling gene expression using onto-express. Genomics. 79: 266-70. PMID 11829497 DOI: 10.1006/Geno.2002.6698 |
0.607 |
|
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