Susan J. Brown - Publications

Kansas State University, Manhattan, KS, United States 

132 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Propp VR, De Silva AO, Spencer C, Brown SJ, Catingan SD, Smith JE, Roy JW. Organic contaminants of emerging concern in leachate of historic municipal landfills. Environmental Pollution (Barking, Essex : 1987). 276: 116474. PMID 33639486 DOI: 10.1016/j.envpol.2021.116474  0.01
2020 Dougherty L, Bai T, Brown S, Xu K. Exploring DNA Variant Segregation Types Enables Mapping Loci for Recessive Phenotypic Suppression of Columnar Growth in Apple. Frontiers in Plant Science. 11: 692. PMID 32582242 DOI: 10.3389/Fpls.2020.00692  0.01
2020 Van Stempvoort DR, Brown SJ, Smyth SA. Detections of alkyl-phenoxy-benzenesulfonates in municipal wastewater. Chemosphere. 251: 126386. PMID 32155495 DOI: 10.1016/j.chemosphere.2020.126386  0.01
2020 Cicero JM, Hunter WB, Cano LM, Saha S, Mueller LA, Brown SJ. Reinterpretation of 'sperm pump' or 'sperm syringe' function with notes on other male internal reproductive organs in the Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae). Arthropod Structure & Development. 54: 100915. PMID 32062333 DOI: 10.1016/J.Asd.2020.100915  0.01
2020 Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, ... ... Brown SJ, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6  0.52
2019 Hosmani PS, Shippy T, Miller S, Benoit JB, Munoz-Torres M, Flores-Gonzalez M, Mueller LA, Wiersma-Koch H, D'Elia T, Brown SJ, Saha S. A quick guide for student-driven community genome annotation. Plos Computational Biology. 15: e1006682. PMID 30943207 DOI: 10.1371/Journal.Pcbi.1006682  0.04
2019 Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, ... Brown SJ, et al. Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database : the Journal of Biological Databases and Curation. 2019. PMID 30820572 DOI: 10.1093/database/baz035  0.04
2019 Jin S, O J, Stellabotte F, Brown SJ, Choe CP. Expression of teneurin-m/odd Oz during segmentation in the beetle Tribolium castaneum. Gene Expression Patterns : Gep. PMID 30630105 DOI: 10.1016/J.Gep.2019.01.002  1
2018 Stolle E, Pracana R, Howard P, Paris CI, Brown SJ, Castillo-Carrillo C, Rossiter SJ, Wurm Y. Degenerative expansion of a young supergene. Molecular Biology and Evolution. PMID 30576522 DOI: 10.1093/Molbev/Msy236  0.01
2018 Cicero JM, Alba-Tercedor J, Hunter WB, Cano LM, Saha S, Mueller LA, Brown SJ. Asian citrus psyllid stylet morphology and applicability to the model for inter-instar stylet replacement in the potato psyllid. Arthropod Structure & Development. PMID 29959091 DOI: 10.1016/J.Asd.2018.06.007  0.01
2018 Avila LA, Chandrasekar R, Wilkinson KE, Balthazor J, Heerman M, Bechard J, Brown S, Park Y, Dhar S, Reeck GR, Tomich JM. Delivery of lethal dsRNAs in insect diets by branched amphiphilic peptide capsules. Journal of Controlled Release : Official Journal of the Controlled Release Society. 273: 139-146. PMID 29407675 DOI: 10.1016/J.Jconrel.2018.01.010  0.04
2017 Saha S, Hosmani PS, Villalobos-Ayala K, Miller S, Shippy T, Flores M, Rosendale A, Cordola C, Bell T, Mann H, DeAvila G, DeAvila D, Moore Z, Buller K, Ciolkevich K, ... Brown SJ, et al. Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. Database : the Journal of Biological Databases and Curation. 2017. PMID 29220441 DOI: 10.1093/Database/Bax032  0.04
2017 Larsen PA, Harris RA, Liu Y, Murali SC, Campbell CR, Brown AD, Sullivan BA, Shelton J, Brown SJ, Raveendran M, Dudchenko O, Machol I, Durand NC, Shamim MS, Aiden EL, et al. Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). Bmc Biology. 15: 110. PMID 29145861 DOI: 10.1186/S12915-017-0439-6  0.01
2017 Zhu X, Rudolf H, Healey L, François P, Brown SJ, Klingler M, El-Sherif E. Speed regulation of genetic cascades allows for evolvability in the body plan specification of insects. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973882 DOI: 10.1073/Pnas.1702478114  0.52
2017 Choe CP, Stellabotte F, Brown SJ. Regulation and function of odd-paired in Tribolium segmentation. Development Genes and Evolution. PMID 28791475 DOI: 10.1007/S00427-017-0590-7  1
2016 Raithel S, Johnson L, Galliart M, Brown S, Shelton J, Herndon N, Bello NM. Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii. Bmc Genomics. 17: 140. PMID 26919855 DOI: 10.1186/S12864-016-2442-7  1
2015 Cunningham CB, Ji L, Wiberg RA, Shelton J, McKinney EC, Parker DJ, Meagher RB, Benowitz KM, Roy-Zokan EM, Ritchie MG, Brown SJ, Schmitz RJ, Moore AJ. The genome and methylome of a beetle with complex social behavior, Nicrophorus vespilloides (Coleoptera: Silphidae). Genome Biology and Evolution. PMID 26454014 DOI: 10.1093/Gbe/Evv194  1
2015 Shelton JM, Coleman MC, Herndon N, Lu N, Lam ET, Anantharaman T, Sheth P, Brown SJ. Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool. Bmc Genomics. 16: 734. PMID 26416786 DOI: 10.1186/S12864-015-1911-8  1
2015 Haug JT, Labandeira CC, Santiago-Blay JA, Haug C, Brown S. Life habits, hox genes, and affinities of a 311 million-year-old holometabolan larva. Bmc Evolutionary Biology. 15: 208. PMID 26416251 DOI: 10.1186/S12862-015-0428-8  1
2015 Niphakis MJ, Lum KM, Cognetta AB, Correia BE, Ichu TA, Olucha J, Brown SJ, Kundu S, Piscitelli F, Rosen H, Cravatt BF. A Global Map of Lipid-Binding Proteins and Their Ligandability in Cells. Cell. 161: 1668-80. PMID 26091042 DOI: 10.1016/J.Cell.2015.05.045  0.08
2015 Wright EK, Kamm MA, De Cruz P, Hamilton AL, Ritchie KJ, Krejany EO, Gorelik A, Liew D, Prideaux L, Lawrance IC, Andrews JM, Bampton PA, Sparrow MP, Florin TH, Gibson PR, ... Brown SJ, et al. Effect of intestinal resection on quality of life in Crohn's disease. Journal of Crohn's & Colitis. 9: 452-62. PMID 25855073 DOI: 10.1093/Ecco-Jcc/Jjv058  0.08
2015 Harkins CP, Waters A, Kerr A, Campbell L, Irwin McLean WH, Brown SJ, Ibbotson SH. Loss-of-Function Mutations in the Gene Encoding Filaggrin Are Not Strongly Associated with Chronic Actinic Dermatitis. The Journal of Investigative Dermatology. 135: 1919-21. PMID 25734812 DOI: 10.1038/jid.2015.64  0.01
2015 Zhao C, Escalante LN, Chen H, Benatti TR, Qu J, Chellapilla S, Waterhouse RM, Wheeler D, Andersson MN, Bao R, Batterton M, Behura SK, Blankenburg KP, Caragea D, Carolan JC, ... Brown SJ, et al. A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor. Current Biology : Cb. 25: 613-20. PMID 25660540 DOI: 10.1016/J.Cub.2014.12.057  1
2015 Wright EK, Kamm MA, De Cruz P, Hamilton AL, Ritchie KJ, Krejany EO, Leach S, Gorelik A, Liew D, Prideaux L, Lawrance IC, Andrews JM, Bampton PA, Jakobovits SL, Florin TH, ... Brown SJ, et al. Measurement of fecal calprotectin improves monitoring and detection of recurrence of Crohn's disease after surgery. Gastroenterology. 148: 938-947.e1. PMID 25620670 DOI: 10.1053/j.gastro.2015.01.026  0.08
2015 Chang JW, Zuhl AM, Speers AE, Niessen S, Brown SJ, Mulvihill MM, Fan YC, Spicer TP, Southern M, Scampavia L, Fernandez-Vega V, Dix MM, Cameron MD, Hodder PS, Rosen H, et al. Selective inhibitor of platelet-activating factor acetylhydrolases 1b2 and 1b3 that impairs cancer cell survival. Acs Chemical Biology. 10: 925-32. PMID 25602368 DOI: 10.1021/Cb500893Q  0.08
2015 Baurecht H, Hotze M, Brand S, Büning C, Cormican P, Corvin A, Ellinghaus D, Ellinghaus E, Esparza-Gordillo J, Fölster-Holst R, Franke A, Gieger C, Hubner N, Illig T, Irvine AD, ... Brown SJ, et al. Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms. American Journal of Human Genetics. 96: 104-20. PMID 25574825 DOI: 10.1016/j.ajhg.2014.12.004  0.01
2015 O'Shaughnessy RF, Brown SJ. Insight from the air-skin interface. The Journal of Investigative Dermatology. 135: 331-3. PMID 25573043 DOI: 10.1038/jid.2014.457  0.01
2015 De Cruz P, Kamm MA, Hamilton AL, Ritchie KJ, Krejany EO, Gorelik A, Liew D, Prideaux L, Lawrance IC, Andrews JM, Bampton PA, Gibson PR, Sparrow M, Leong RW, Florin TH, ... Brown SJ, et al. Crohn's disease management after intestinal resection: a randomised trial. Lancet (London, England). 385: 1406-17. PMID 25542620 DOI: 10.1016/S0140-6736(14)61908-5  0.08
2015 Brough HA, Liu AH, Sicherer S, Makinson K, Douiri A, Brown SJ, Stephens AC, Irwin McLean WH, Turcanu V, Wood RA, Jones SM, Burks W, Dawson P, Stablein D, Sampson H, et al. Atopic dermatitis increases the effect of exposure to peanut antigen in dust on peanut sensitization and likely peanut allergy. The Journal of Allergy and Clinical Immunology. 135: 164-70. PMID 25457149 DOI: 10.1016/j.jaci.2014.10.007  0.01
2015 Brown SJ, Tagu D. Editorial overview: Insect genomics: How to sequence five thousand insect genomes? Current Opinion in Insect Science. 7: iv-v. DOI: 10.1016/j.cois.2015.02.006  1
2014 El-Sherif E, Zhu X, Fu J, Brown SJ. Caudal regulates the spatiotemporal dynamics of pair-rule waves in Tribolium. Plos Genetics. 10: e1004677. PMID 25329152 DOI: 10.1371/Journal.Pgen.1004677  1
2014 Simpson EL, Chalmers JR, Hanifin JM, Thomas KS, Cork MJ, McLean WH, Brown SJ, Chen Z, Chen Y, Williams HC. Emollient enhancement of the skin barrier from birth offers effective atopic dermatitis prevention. The Journal of Allergy and Clinical Immunology. 134: 818-23. PMID 25282563 DOI: 10.1016/j.jaci.2014.08.005  0.04
2014 Hiraishi H, Oatman J, Haller SL, Blunk L, McGivern B, Morris J, Papadopoulos E, Gutierrez W, Gordon M, Bokhari W, Ikeda Y, Miles D, Fellers J, Asano M, Wagner G, ... Brown SJ, et al. Essential role of eIF5-mimic protein in animal development is linked to control of ATF4 expression. Nucleic Acids Research. 42: 10321-30. PMID 25147208 DOI: 10.1093/Nar/Gku670  1
2014 Cole C, Kroboth K, Schurch NJ, Sandilands A, Sherstnev A, O'Regan GM, Watson RM, McLean WH, Barton GJ, Irvine AD, Brown SJ. Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis. The Journal of Allergy and Clinical Immunology. 134: 82-91. PMID 24880632 DOI: 10.1016/j.jaci.2014.04.021  0.01
2014 Schurch NJ, Cole C, Sherstnev A, Song J, Duc C, Storey KG, McLean WH, Brown SJ, Simpson GG, Barton GJ. Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs. Plos One. 9: e94270. PMID 24722185 DOI: 10.1371/Journal.Pone.0094270  0.04
2014 Thawer-Esmail F, Jakasa I, Todd G, Wen Y, Brown SJ, Kroboth K, Campbell LE, O'Regan GM, McLean WH, Irvine AD, Kezic S, Sandilands A. South African amaXhosa patients with atopic dermatitis have decreased levels of filaggrin breakdown products but no loss-of-function mutations in filaggrin. The Journal of Allergy and Clinical Immunology. 133: 280-2.e1-2. PMID 24369804 DOI: 10.1016/j.jaci.2013.09.053  0.04
2013 Saunders SP, Goh CS, Brown SJ, Palmer CN, Porter RM, Cole C, Campbell LE, Gierlinski M, Barton GJ, Schneider G, Balmain A, Prescott AR, Weidinger S, Baurecht H, Kabesch M, et al. Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects. The Journal of Allergy and Clinical Immunology. 132: 1121-9. PMID 24084074 DOI: 10.1016/J.Jaci.2013.08.046  0.01
2013 Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050  1
2013 Weidinger S, Willis-Owen SA, Kamatani Y, Baurecht H, Morar N, Liang L, Edser P, Street T, Rodriguez E, O'Regan GM, Beattie P, Fölster-Holst R, Franke A, Novak N, Fahy CM, ... Brown SJ, et al. A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis. Human Molecular Genetics. 22: 4841-56. PMID 23886662 DOI: 10.1093/Hmg/Ddt317  0.01
2013 Satsu H, Schaeffer MT, Guerrero M, Saldana A, Eberhart C, Hodder P, Cayanan C, Schürer S, Bhhatarai B, Roberts E, Rosen H, Brown SJ. A sphingosine 1-phosphate receptor 2 selective allosteric agonist. Bioorganic & Medicinal Chemistry. 21: 5373-82. PMID 23849205 DOI: 10.1016/J.Bmc.2013.06.012  0.08
2013 Hiraishi H, Shin BS, Udagawa T, Nemoto N, Chowdhury W, Graham J, Cox C, Reid M, Brown SJ, Asano K. Interaction between 25S rRNA A loop and eukaryotic translation initiation factor 5B promotes subunit joining and ensures stringent AUG selection. Molecular and Cellular Biology. 33: 3540-8. PMID 23836883 DOI: 10.1128/Mcb.00771-13  1
2013 Vickers CJ, González-Páez GE, Umotoy JC, Cayanan-Garrett C, Brown SJ, Wolan DW. Small-molecule procaspase activators identified using fluorescence polarization. Chembiochem : a European Journal of Chemical Biology. 14: 1419-22. PMID 23836614 DOI: 10.1002/Cbic.201300315  0.08
2013 Pöhler E, Zamiri M, Harkins CP, Salas-Alanis JC, Perkins W, Smith FJ, McLean WH, Brown SJ. Heterozygous mutations in AAGAB cause type 1 punctate palmoplantar keratoderma with evidence for increased growth factor signaling. The Journal of Investigative Dermatology. 133: 2805-8. PMID 23743648 DOI: 10.1038/jid.2013.243  0.01
2013 Asai Y, Greenwood C, Hull PR, Alizadehfar R, Ben-Shoshan M, Brown SJ, Campbell L, Michel DL, Bussières J, Rousseau F, Fujiwara TM, Morgan K, Irvine AD, McLean WH, Clarke A. Filaggrin gene mutation associations with peanut allergy persist despite variations in peanut allergy diagnostic criteria or asthma status. The Journal of Allergy and Clinical Immunology. 132: 239-42. PMID 23684069 DOI: 10.1016/J.Jaci.2013.03.043  0.01
2013 Nagano JM, Hsu KL, Whitby LR, Niphakis MJ, Speers AE, Brown SJ, Spicer T, Fernandez-Vega V, Ferguson J, Hodder P, Srinivasan P, Gonzalez TD, Rosen H, Bahnson BJ, Cravatt BF. Selective inhibitors and tailored activity probes for lipoprotein-associated phospholipase A(2). Bioorganic & Medicinal Chemistry Letters. 23: 839-43. PMID 23260346 DOI: 10.1016/J.Bmcl.2012.11.061  0.08
2013 Hulleman JD, Brown SJ, Rosen H, Kelly JW. A high-throughput cell-based Gaussia luciferase reporter assay for identifying modulators of fibulin-3 secretion. Journal of Biomolecular Screening. 18: 647-58. PMID 23230284 DOI: 10.1177/1087057112469405  0.08
2013 Cahalan SM, Gonzalez-Cabrera PJ, Nguyen N, Guerrero M, Cisar EA, Leaf NB, Brown SJ, Roberts E, Rosen H. Sphingosine 1-phosphate receptor 1 (S1P(1)) upregulation and amelioration of experimental autoimmune encephalomyelitis by an S1P(1) antagonist. Molecular Pharmacology. 83: 316-21. PMID 23204443 DOI: 10.1124/Mol.112.082958  0.08
2012 Lynch JA, El-Sherif E, Brown SJ. Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 16-39. PMID 23801665 DOI: 10.1002/Wdev.3  1
2012 Miller SC, Miyata K, Brown SJ, Tomoyasu Y. Dissecting systemic RNA interference in the red flour beetle Tribolium castaneum: parameters affecting the efficiency of RNAi. Plos One. 7: e47431. PMID 23133513 DOI: 10.1371/Journal.Pone.0047431  1
2012 El-Sherif E, Averof M, Brown SJ. A segmentation clock operating in blastoderm and germband stages of Tribolium development. Development (Cambridge, England). 139: 4341-6. PMID 23095886 DOI: 10.1242/Dev.085126  1
2012 Pohler E, Mamai O, Hirst J, Zamiri M, Horn H, Nomura T, Irvine AD, Moran B, Wilson NJ, Smith FJ, Goh CS, Sandilands A, Cole C, Barton GJ, Evans AT, ... Brown SJ, et al. Haploinsufficiency for AAGAB causes clinically heterogeneous forms of punctate palmoplantar keratoderma. Nature Genetics. 44: 1272-6. PMID 23064416 DOI: 10.1038/Ng.2444  0.01
2012 Jo E, Bhhatarai B, Repetto E, Guerrero M, Riley S, Brown SJ, Kohno Y, Roberts E, Schürer SC, Rosen H. Novel selective allosteric and bitopic ligands for the S1P(3) receptor. Acs Chemical Biology. 7: 1975-83. PMID 22971058 DOI: 10.1021/Cb300392Z  0.08
2012 Fu J, Posnien N, Bolognesi R, Fischer TD, Rayl P, Oberhofer G, Kitzmann P, Brown SJ, Bucher G. Asymmetrically expressed axin required for anterior development in Tribolium. Proceedings of the National Academy of Sciences of the United States of America. 109: 7782-6. PMID 22552230 DOI: 10.1073/Pnas.1116641109  1
2012 Merzendorfer H, Kim HS, Chaudhari SS, Kumari M, Specht CA, Butcher S, Brown SJ, Manak JR, Beeman RW, Kramer KJ, Muthukrishnan S. Genomic and proteomic studies on the effects of the insect growth regulator diflubenzuron in the model beetle species Tribolium castaneum. Insect Biochemistry and Molecular Biology. 42: 264-76. PMID 22212827 DOI: 10.1016/J.Ibmb.2011.12.008  1
2012 Bao R, Fischer T, Bolognesi R, Brown SJ, Friedrich M. Parallel duplication and partial subfunctionalization of β-catenin/armadillo during insect evolution. Molecular Biology and Evolution. 29: 647-62. PMID 21890476 DOI: 10.1093/Molbev/Msr219  1
2011 Robinson GE, Hackett KJ, Purcell-Miramontes M, Brown SJ, Evans JD, Goldsmith MR, Lawson D, Okamuro J, Robertson HM, Schneider DJ. Creating a buzz about insect genomes. Science (New York, N.Y.). 331: 1386. PMID 21415334 DOI: 10.1126/Science.331.6023.1386  1
2010 Janssen R, Le Gouar M, Pechmann M, Poulin F, Bolognesi R, Schwager EE, Hopfen C, Colbourne JK, Budd GE, Brown SJ, Prpic NM, Kosiol C, Vervoort M, Damen WG, Balavoine G, et al. Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation. Bmc Evolutionary Biology. 10: 374. PMID 21122121 DOI: 10.1186/1471-2148-10-374  1
2010 Xia J, Caragea D, Brown SJ. Prediction of alternatively spliced exons using support vector machines. International Journal of Data Mining and Bioinformatics. 4: 411-30. PMID 20815140 DOI: 10.1504/IJDMB.2010.034197  1
2010 Nemoto N, Singh CR, Udagawa T, Wang S, Thorson E, Winter Z, Ohira T, Ii M, Valásek L, Brown SJ, Asano K. Yeast 18 S rRNA is directly involved in the ribosomal response to stringent AUG selection during translation initiation. The Journal of Biological Chemistry. 285: 32200-12. PMID 20699223 DOI: 10.1074/Jbc.M110.146662  1
2010 Brown S. The nasonia genome sequence: Finding gems in the jewel (wasp) box Insect Molecular Biology. 19: v-vii. PMID 20167012 DOI: 10.1111/J.1365-2583.2009.00989.X  1
2010 Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Nucleic Acids Research. 38: D437-42. PMID 19820115 DOI: 10.1093/Nar/Gkp807  1
2010 Grace T, Wisely SM, Brown SJ, Dowell FE, Joern A. Divergent host plant adaptation drives the evolution of sexual isolation in the grasshopper Hesperotettix viridis (Orthoptera: Acrididae) in the absence of reinforcement Biological Journal of the Linnean Society. 100: 866-878. DOI: 10.1111/J.1095-8312.2010.01458.X  1
2009 Shippy TD, Coleman CM, Tomoyasu Y, Brown SJ. Concurrent in situ hybridization and antibody staining in red flour beetle (Tribolium) embryos. Cold Spring Harbor Protocols. 2009: pdb.prot5257. PMID 20147233 DOI: 10.1101/Pdb.Prot5257  1
2009 Brown SJ, Shippy TD, Miller S, Bolognesi R, Beeman RW, Lorenzen MD, Bucher G, Wimmer EA, Klingler M. The red flour beetle, Tribolium castaneum (Coleoptera): a model for studies of development and pest biology. Cold Spring Harbor Protocols. 2009: pdb.emo126. PMID 20147228 DOI: 10.1101/Pdb.Emo126  1
2009 Trauner J, Schinko J, Lorenzen MD, Shippy TD, Wimmer EA, Beeman RW, Klingler M, Bucher G, Brown SJ. Large-scale insertional mutagenesis of a coleopteran stored grain pest, the red flour beetle Tribolium castaneum, identifies embryonic lethal mutations and enhancer traps. Bmc Biology. 7: 73. PMID 19891766 DOI: 10.1186/1741-7007-7-73  1
2009 Bolognesi R, Fischer TD, Brown SJ. Loss of Tc-arrow and canonical Wnt signaling alters posterior morphology and pair-rule gene expression in the short-germ insect, Tribolium castaneum. Development Genes and Evolution. 219: 369-75. PMID 19705150 DOI: 10.1007/S00427-009-0299-3  1
2009 Choe CP, Brown SJ. Genetic regulation of engrailed and wingless in Tribolium segmentation and the evolution of pair-rule segmentation. Developmental Biology. 325: 482-91. PMID 19028487 DOI: 10.1016/J.Ydbio.2008.10.037  1
2009 Grace T, Joern A, Apple JL, Brown SJ, Wisely SM. Highly polymorphic microsatellites in the North American snakeweed grasshopper, Hesperotettix viridis Journal of Orthoptera Research. 18: 19-21. DOI: 10.1665/034.018.0111  1
2008 Bolognesi R, Farzana L, Fischer TD, Brown SJ. Multiple Wnt genes are required for segmentation in the short-germ embryo of Tribolium castaneum. Current Biology : Cb. 18: 1624-9. PMID 18926702 DOI: 10.1016/J.Cub.2008.09.057  1
2008 Miller SC, Brown SJ, Tomoyasu Y. Larval RNAi in Drosophila? Development Genes and Evolution. 218: 505-10. PMID 18663472 DOI: 10.1007/S00427-008-0238-8  1
2008 Siebert KS, Lorenzen MD, Brown SJ, Park Y, Beeman RW. Tubulin superfamily genes in Tribolium castaneum and the use of a Tubulin promoter to drive transgene expression. Insect Biochemistry and Molecular Biology. 38: 749-55. PMID 18625397 DOI: 10.1016/J.Ibmb.2008.04.007  1
2008 Bolognesi R, Beermann A, Farzana L, Wittkopp N, Lutz R, Balavoine G, Brown SJ, Schröder R. Tribolium Wnts: evidence for a larger repertoire in insects with overlapping expression patterns that suggest multiple redundant functions in embryogenesis. Development Genes and Evolution. 218: 193-202. PMID 18392880 DOI: 10.1007/S00427-007-0170-3  1
2008 Farzana L, Brown SJ. Hedgehog signaling pathway function conserved in Tribolium segmentation. Development Genes and Evolution. 218: 181-92. PMID 18392879 DOI: 10.1007/S00427-008-0207-2  1
2008 Shippy TD, Tomoyasu Y, Nie W, Brown SJ, Denell RE. Do teashirt family genes specify trunk identity? Insights from the single tiptop/teashirt homolog of Tribolium castaneum. Development Genes and Evolution. 218: 141-52. PMID 18392876 DOI: 10.1007/S00427-008-0212-5  1
2008 Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE. Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters. Development Genes and Evolution. 218: 127-39. PMID 18392875 DOI: 10.1007/S00427-008-0213-4  1
2008 Wang S, Lorenzen MD, Beeman RW, Brown SJ. Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome. Genome Biology. 9: R61. PMID 18366801 DOI: 10.1186/Gb-2008-9-3-R61  1
2008 Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... Brown S, ... Brown SJ, ... Brown SJ, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784  1
2008 Wang J, Du Y, Wang S, Brown SJ, Park Y. Large diversity of the piggyBac-like elements in the genome of Tribolium castaneum. Insect Biochemistry and Molecular Biology. 38: 490-8. PMID 18342253 DOI: 10.1016/J.Ibmb.2007.04.012  1
2008 Park Y, Aikins J, Wang LJ, Beeman RW, Oppert B, Lord JC, Brown SJ, Lorenzen MD, Richards S, Weinstock GM, Gibbs RA. Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. Insect Biochemistry and Molecular Biology. 38: 380-6. PMID 18342244 DOI: 10.1016/J.Ibmb.2007.09.008  1
2008 Xia J, Caragea D, Brown S. Exploring alternative splicing features using support vector machines Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 231-238. DOI: 10.1109/BIBM.2008.12  1
2007 Lorenzen MD, Kimzey T, Shippy TD, Brown SJ, Denell RE, Beeman RW. piggyBac-based insertional mutagenesis in Tribolium castaneum using donor/helper hybrids. Insect Molecular Biology. 16: 265-75. PMID 17316329 DOI: 10.1111/J.1365-2583.2007.00727.X  1
2007 Wang L, Wang S, Li Y, Paradesi MS, Brown SJ. BeetleBase: the model organism database for Tribolium castaneum. Nucleic Acids Research. 35: D476-9. PMID 17090595 DOI: 10.1093/Nar/Gkl776  1
2007 Choe CP, Brown SJ. Evolutionary flexibility of pair-rule patterning revealed by functional analysis of secondary pair-rule genes, paired and sloppy-paired in the short-germ insect, Tribolium castaneum. Developmental Biology. 302: 281-94. PMID 17054935 DOI: 10.1016/J.Ydbio.2006.09.037  1
2007 Becker CD, Richardson EA, Brown SJ. MtDNA haplotypes, sequence divergence, and morphological variation in Gray-breasted Wood Wrens (Henichorina leucophrys) and their conservation implications Journal of Field Ornithology. 78: 117-123. DOI: 10.1111/J.1557-9263.2007.00095.X  1
2006 Wang L, Brown SJ. Prediction of RNA-binding residues in protein sequences using support vector machines. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5830-3. PMID 17946337 DOI: 10.1109/IEMBS.2006.260025  1
2006 Wang L, Brown SJ. Prediction of DNA-binding residues from sequence features. Journal of Bioinformatics and Computational Biology. 4: 1141-58. PMID 17245807 DOI: 10.1142/S0219720006002387  1
2006 . Insights into social insects from the genome of the honeybee Apis mellifera. Nature. 443: 931-49. PMID 17073008 DOI: 10.1038/Nature05260  1
2006 Dearden PK, Wilson MJ, Sablan L, Osborne PW, Havler M, McNaughton E, Kimura K, Milshina NV, Hasselmann M, Gempe T, Schioett M, Brown SJ, Elsik CG, Holland PW, Kadowaki T, et al. Patterns of conservation and change in honey bee developmental genes. Genome Research. 16: 1376-84. PMID 17065607 DOI: 10.1101/Gr.5108606  1
2006 Shippy TD, Rogers CD, Beeman RW, Brown SJ, Denell RE. The Tribolium castaneum ortholog of Sex combs reduced controls dorsal ridge development. Genetics. 174: 297-307. PMID 16849608 DOI: 10.1534/Genetics.106.058610  1
2006 Wang L, Brown SJ. BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. Nucleic Acids Research. 34: W243-8. PMID 16845003 DOI: 10.1093/Nar/Gkl298  1
2006 Choe CP, Miller SC, Brown SJ. A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum. Proceedings of the National Academy of Sciences of the United States of America. 103: 6560-4. PMID 16611732 DOI: 10.1073/Pnas.0510440103  1
2006 Deng Y, Dong Y, Brown SJ, Zhang C. An integrated web-based model for management, analysis and retrieval of EST biological information Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3842: 931-938. DOI: 10.1007/11610496_129  1
2005 Lorenzen MD, Doyungan Z, Savard J, Snow K, Crumly LR, Shippy TD, Stuart JJ, Brown SJ, Beeman RW. Genetic linkage maps of the red flour beetle, Tribolium castaneum, based on bacterial artificial chromosomes and expressed sequence tags. Genetics. 170: 741-7. PMID 15834150 DOI: 10.1534/Genetics.104.032227  1
2005 Bucher G, Farzana L, Brown SJ, Klingler M. Anterior localization of maternal mRNAs in a short germ insect lacking bicoid. Evolution & Development. 7: 142-9. PMID 15733312 DOI: 10.1111/J.1525-142X.2005.05016.X  1
2005 Deng Y, He T, Wu Y, Vanka P, Yang G, Huang Y, Yao H, Brown SJ. Computationally analyzing the possible biological function of YJL103C--an ORF potentially involved in the regulation of energy process in yeast. International Journal of Molecular Medicine. 15: 123-7. PMID 15583838 DOI: 10.3892/Ijmm.15.1.123  1
2005 Shen J, Chang SI, Lee ES, Deng Y, Brown SJ. Determination of cluster number in clustering microarray data Applied Mathematics and Computation. 169: 1172-1185. DOI: 10.1016/J.Amc.2004.10.076  1
2004 Lu Y, Lu S, Fotouhi F, Deng Y, Brown SJ. Incremental genetic K-means algorithm and its application in gene expression data analysis. Bmc Bioinformatics. 5: 172. PMID 15511294 DOI: 10.1186/1471-2105-5-172  1
2004 Zhu Q, Deng Y, Vanka P, Brown SJ, Muthukrishnan S, Kramer KJ. Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. Bioinformatics (Oxford, England). 20: 161-9. PMID 14734306 DOI: 10.1093/Bioinformatics/Bth020  1
2003 Brown SJ, Denell RE, Beeman RW. Beetling around the genome. Genetical Research. 82: 155-61. PMID 15134194 DOI: 10.1017/S0016672303006451  1
2003 Lorenzen MD, Berghammer AJ, Brown SJ, Denell RE, Klingler M, Beeman RW. piggyBac-mediated germline transformation in the beetle Tribolium castaneum. Insect Molecular Biology. 12: 433-40. PMID 12974948 DOI: 10.1046/J.1365-2583.2003.00427.X  1
2003 Wheeler SR, Carrico ML, Wilson BA, Brown SJ, Skeath JB. The expression and function of the achaete-scute genes in Tribolium castaneum reveals conservation and variation in neural pattern formation and cell fate specification. Development (Cambridge, England). 130: 4373-81. PMID 12900453 DOI: 10.1242/Dev.00646  1
2003 Brown SJ. Entomological contributions to genetics: studies on insect germ cells linked genes to chromosomes and chromosomes to mendelian inheritance. Archives of Insect Biochemistry and Physiology. 53: 115-8. PMID 12811764 DOI: 10.1002/Arch.10092  1
2002 Lorenzen MD, Brown SJ, Denell RE, Beeman RW. Transgene expression from the Tribolium castaneum Polyubiquitin promoter. Insect Molecular Biology. 11: 399-407. PMID 12230539 DOI: 10.1046/J.1365-2583.2002.00349.X  1
2002 Fujioka M, Yusibova GL, Patel NH, Brown SJ, Jaynes JB. The repressor activity of Even-skipped is highly conserved, and is sufficient to activate engrailed and to regulate both the spacing and stability of parasegment boundaries. Development (Cambridge, England). 129: 4411-21. PMID 12223400  1
2002 Brown SJ, Shippy TD, Beeman RW, Denell RE. Tribolium Hox genes repress antennal development in the gnathos and trunk. Molecular Phylogenetics and Evolution. 24: 384-7. PMID 12220981 DOI: 10.1016/S1055-7903(02)00205-1  1
2002 Brown SJ, Fellers JP, Shippy TD, Richardson EA, Maxwell M, Stuart JJ, Denell RE. Sequence of the Tribolium castaneum homeotic complex: the region corresponding to the Drosophila melanogaster antennapedia complex. Genetics. 160: 1067-74. PMID 11901122  1
2002 Lorenzen MD, Brown SJ, Denell RE, Beeman RW. Cloning and characterization of the Tribolium castaneum eye-color genes encoding tryptophan oxygenase and kynurenine 3-monooxygenase. Genetics. 160: 225-34. PMID 11805058  1
2001 Nie W, Stronach B, Panganiban G, Shippy T, Brown S, Denell R. Molecular characterization of Tclabial and the 3' end of the Tribolium homeotic complex. Development Genes and Evolution. 211: 244-51. PMID 11455439 DOI: 10.1007/S004270100151  1
2001 Haas MS, Brown SJ, Beeman RW. Homeotic evidence for the appendicular origin of the labrum in Tribolium castaneum Development Genes and Evolution. 211: 96-102. PMID 11455420 DOI: 10.1007/S004270000128  1
2001 Haas MS, Brown SJ, Beeman RW. Pondering the procephalon: The segmental origin of the labrum Development Genes and Evolution. 211: 89-95. PMID 11455419 DOI: 10.1007/s004270000128  1
2001 Brown S, Fellers J, Shippy T, Denell R, Stauber M, Schmidt-Ott U. A strategy for mapping bicoid on the phylogenetic tree. Current Biology : Cb. 11: R43-4. PMID 11231138 DOI: 10.1016/S0960-9822(01)00007-0  1
2000 Shippy TD, Brown SJ, Denell RE. Maxillopedia is the Tribolium ortholog of proboscipedia. Evolution & Development. 2: 145-51. PMID 11252570 DOI: 10.1046/J.1525-142X.2000.00055.X  1
2000 Brown S, DeCamillis M, Gonzalez-Charneco K, Denell M, Beeman R, Nie W, Denell R. Implications of the Tribolium Deformed mutant phenotype for the evolution of Hox gene function. Proceedings of the National Academy of Sciences of the United States of America. 97: 4510-4. PMID 10781053 DOI: 10.1073/Pnas.97.9.4510  1
1999 Brown SJ, Mahaffey JP, Lorenzen MD, Denell RE, Mahaffey JW. Using RNAi to investigate orthologous homeotic gene function during development of distantly related insects. Evolution & Development. 1: 11-5. PMID 11324015 DOI: 10.1046/J.1525-142X.1999.99013.X  1
1999 Bennett RL, Brown SJ, Denell RE. Molecular and genetic analysis of the Tribolium Ultrabithorax ortholog, Ultrathorax. Development Genes and Evolution. 209: 608-19. PMID 10552302 DOI: 10.1007/S004270050295  1
1999 Brown S, Holtzman S, Kaufman T, Denell R. Characterization of the Tribolium Deformed ortholog and its ability to directly regulate Deformed target genes in the rescue of a Drosophila Deformed null mutant. Development Genes and Evolution. 209: 389-98. PMID 10370122 DOI: 10.1007/S004270050269  1
1998 Shippy TD, Brown SJ, Denell RE. Molecular characterization of the Tribolium abdominal-A ortholog and implications for the products of the Drosophila gene. Development Genes and Evolution. 207: 446-52. PMID 9510539 DOI: 10.1007/S004270050135  1
1997 Brown SJ, Parrish JK, Beeman RW, Denell RE. Molecular characterization and embryonic expression of the even-skipped ortholog of Tribolium castaneum. Mechanisms of Development. 61: 165-73. PMID 9076686 DOI: 10.1016/S0925-4773(96)00642-9  1
1997 Guichet A, Copeland JW, Erdélyi M, Hlousek D, Závorszky P, Ho J, Brown S, Percival-Smith A, Krause HM, Ephrussi A. The nuclear receptor homologue Ftz-F1 and the homeodomain protein Ftz are mutually dependent cofactors. Nature. 385: 548-52. PMID 9020363 DOI: 10.1038/385548A0  1
1996 Sanchez-Salazar J, Pletcher MT, Bennett RL, Brown SJ, Dandamudi TJ, Denell RE, Doctor JS. The Tribolium decapentaplegic gene is similar in sequence, structure, and expression to the Drosophila dpp gene. Development Genes and Evolution. 206: 237-46. PMID 24173563 DOI: 10.1007/S004270050049  1
1996 Li Y, Brown SJ, Hausdorf B, Tautz D, Denell RE, Finkelstein R. Two orthodenticle-related genes in the short-germ beetle Tribolium castaneum. Development Genes and Evolution. 206: 35-45. PMID 24173395 DOI: 10.1007/S004270050028  1
1996 Falciani F, Hausdorf B, Schröder R, Akam M, Tautz D, Denell R, Brown S. Class 3 Hox genes in insects and the origin of zen. Proceedings of the National Academy of Sciences of the United States of America. 93: 8479-84. PMID 8710895 DOI: 10.1073/Pnas.93.16.8479  1
1996 Stuart JJ, De Gortari MJ, Hall PS, Maxwell ME, Mocelin G, Brown SJ, Muir WM. Useful DNA polymorphisms are identified by snapback, a midrepetitive element in Tribolium castaneum. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 39: 568-78. PMID 8675001 DOI: 10.1139/G96-072  1
1996 Brown SJ, Denell RE. Segmentation and dorsoventral patterning in Tribolium Seminars in Cell and Developmental Biology. 7: 553-560. DOI: 10.1006/Scdb.1996.0069  1
1996 Denell RE, Brown SJ, Beeman RW. Evolution of the organization and function of insect homeotic complexes Seminars in Cell and Developmental Biology. 7: 527-538. DOI: 10.1006/Scdb.1996.0067  1
1994 Brown SJ, Parrish JK, Denell RE, Beeman RW. Genetic control of early embryogenesis in the red flour beetle, Tribolium castaneum. American Zoologist. 34: 343-52. PMID 11540629 DOI: 10.1093/Icb/34.3.343  1
1994 Brown SJ, Patel NH, Denell RE. Embryonic expression of the single Tribolium engrailed homolog. Developmental Genetics. 15: 7-18. PMID 8187351 DOI: 10.1002/Dvg.1020150103  1
1994 Brown SJ, Hilgenfeld RB, Denell RE. The beetle Tribolium castaneum has a fushi tarazu homolog expressed in stripes during segmentation. Proceedings of the National Academy of Sciences of the United States of America. 91: 12922-6. PMID 7809147 DOI: 10.1073/Pnas.91.26.12922  1
1993 Beeman RW, Stuart JJ, Brown SJ, Denell RE. Structure and function of the homeotic gene complex (HOM-C) in the beetle, Tribolium castaneum. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 15: 439-44. PMID 11536538 DOI: 10.1002/Bies.950150702  1
1991 Stuart JJ, Brown SJ, Beeman RW, Denell RE. A deficiency of the homeotic complex of the beetle Tribolium. Nature. 350: 72-4. PMID 11536480 DOI: 10.1038/350072A0  1
1990 Brown SJ, Henry JK, Black IV WC, Denell RE. Molecular genetic manipulation of the red flour beetle: Genome organization and cloning of a ribosomal protein gene Insect Biochemistry. 20: 185-193. DOI: 10.1016/0020-1790(90)90011-I  1
1988 Brown SJ, Rhoads DD, Stewart MJ, Van Slyke B, Chen IT, Johnson TK, Denell RE, Roufa DJ. Ribosomal protein S14 is encoded by a pair of highly conserved, adjacent genes on the X chromosome of Drosophila melanogaster. Molecular and Cellular Biology. 8: 4314-21. PMID 3141788 DOI: 10.1128/Mcb.8.10.4314  1
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