J Bernard Heymann - Publications

Structural Biology, Electron Microscopy, Molecular Modeling

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Heymann JB, Vijayasarathy C, Fariss RN, Sieving PA. Advances in understanding the molecular structure of retinoschisin while questions remain of biological function. Progress in Retinal and Eye Research. 101147. PMID 36402656 DOI: 10.1016/j.preteyeres.2022.101147  0.513
2021 Buch MHC, Newcomb WW, Winkler DC, Steven AC, Heymann JB. Cryo-Electron Tomography of the Herpesvirus Procapsid Reveals Interactions of the Portal with the Scaffold and a Shift on Maturation. Mbio. 12. PMID 33727359 DOI: 10.1128/mBio.03575-20  0.508
2021 Ramírez-Aportela E, Maluenda D, Fonseca YC, Conesa P, Marabini R, Heymann JB, Carazo JM, Sorzano COS. FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation. Nature Communications. 12: 42. PMID 33397925 DOI: 10.1038/s41467-020-20295-w  0.655
2020 Heymann JB. High resolution electron tomography and segmentation-by-modeling interpretation in Bsoft. Protein Science : a Publication of the Protein Society. PMID 32852078 DOI: 10.1002/Pro.3938  0.316
2020 Heymann JB, Wang B, Newcomb WW, Wu W, Winkler DC, Cheng N, Reilly ER, Hsia RC, Thomas JA, Steven AC. The Mottled Capsid of the Giant Phage SPN3US, a Likely Maturation Intermediate with a Novel Internal Shell. Viruses. 12. PMID 32825132 DOI: 10.3390/V12090910  0.557
2019 Desfosses A, Venugopal H, Joshi T, Felix J, Jessop M, Jeong H, Hyun J, Heymann JB, Hurst MRH, Gutsche I, Mitra AK. Atomic structures of an entire contractile injection system in both the extended and contracted states. Nature Microbiology. PMID 31384001 DOI: 10.1038/S41564-019-0530-6  0.358
2019 Heymann JB, Vijayasarathy C, Huang RK, Dearborn AD, Sieving PA, Steven AC. Cryo-EM of retinoschisin branched networks suggests an intercellular adhesive scaffold in the retina. The Journal of Cell Biology. PMID 30630865 DOI: 10.1083/Jcb.201806148  0.723
2019 Heymann JB. Single-particle reconstruction statistics: a diagnostic tool in solving biomolecular structures by cryo-EM. Acta Crystallographica. Section F, Structural Biology Communications. 75: 33-44. PMID 30605123 DOI: 10.1107/S2053230X18017636  0.346
2019 Heymann JB, Bleck CKE, Fariss RN, Vijayasarathy C, Winkler DC, Huang R, Dearborn AD, Smirnov A, Sieving PA, Steven AC. Hunting for the Adhesion Molecule, Retinoschisin, in Retina using CEMOVIS Microscopy and Microanalysis. 25: 1308-1309. DOI: 10.1017/S143192761900727X  0.687
2019 Buch MHC, Heymann JB, Newcomb WW, Winkler DC, Steven AC. Localization of the Herpesvirus Portal Microscopy and Microanalysis. 25: 1162-1163. DOI: 10.1017/S1431927619006548  0.435
2018 Heymann JB, Marabini R, Kazemi M, Sorzano COS, Holmdahl M, Mendez JH, Stagg SM, Jonic S, Palovcak E, Armache JP, Zhao J, Cheng Y, Pintilie G, Chiu W, Patwardhan A, et al. The First Single Particle Analysis Map Challenge: A Summary of the Assessments. Journal of Structural Biology. PMID 30114512 DOI: 10.1016/J.Jsb.2018.08.010  0.623
2018 Heymann JB. Map Challenge assessment: Fair comparison of single particle cryoEM reconstructions. Journal of Structural Biology. 204: 360-367. PMID 30030042 DOI: 10.1016/J.Jsb.2018.07.012  0.305
2018 Heymann JB. Single particle reconstruction and validation using Bsoft for the map challenge. Journal of Structural Biology. 204: 90-95. PMID 29981840 DOI: 10.1016/J.Jsb.2018.07.003  0.347
2018 Heymann JB. Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs. Protein Science : a Publication of the Protein Society. 27: 159-171. PMID 28891250 DOI: 10.1002/Pro.3293  0.363
2017 Newcomb WW, Fontana J, Winkler DC, Cheng N, Heymann JB, Steven AC. The Primary Enveloped Virion of Herpes Simplex Virus 1: Its Role in Nuclear Egress. Mbio. 8. PMID 28611252 DOI: 10.1128/Mbio.00825-17  0.506
2017 Newcomb WW, Fontana J, Winkler DC, Cheng N, Heymann JB, Steven AC. Primary Envelopment of the Herpes Simplex 1 Virion Microscopy and Microanalysis. 23: 1224-1225. DOI: 10.1017/S143192761700678X  0.455
2017 Heymann JB, Vijayasarathy C, Huang R, Dearborn A, Sieving PA, Steven AC. Galactose Induces Formation of Chains of the Retinal Adhesion Protein, Retinoschisin Microscopy and Microanalysis. 23: 1112-1113. DOI: 10.1017/S1431927617006225  0.705
2016 DiMattia MA, Watts NR, Cheng N, Huang R, Heymann JB, Grimes JM, Wingfield PT, Stuart DI, Steven AC. The Structure of HIV-1 Rev Filaments Suggests a Bilateral Model for Rev-RRE Assembly. Structure (London, England : 1993). PMID 27265851 DOI: 10.1016/j.str.2016.04.015  0.656
2016 Tolun G, Vijayasarathy C, Huang R, Zeng Y, Li Y, Steven AC, Sieving PA, Heymann JB. Paired octamer rings of retinoschisin suggest a junctional model for cell-cell adhesion in the retina. Proceedings of the National Academy of Sciences of the United States of America. PMID 27114531 DOI: 10.1073/Pnas.1519048113  0.735
2016 Marabini R, Ludtke SJ, Murray SC, Chiu W, de la Rosa-Trevín JM, Patwardhan A, Heymann JB, Carazo JM. The Electron Microscopy eXchange (EMX) initiative. Journal of Structural Biology. 194: 156-63. PMID 26873784 DOI: 10.1016/J.Jsb.2016.02.008  0.763
2016 Heymann JB, Nemecek D, Huang R, Cheng N, Qiao J, Mindich L, Steven AC. A Polymerase-Activating Host Factor, YajQ, Bound to the Bacteriophage ϕ6 Capsid Microscopy and Microanalysis. 22: 1110-1111. DOI: 10.1017/S1431927616006395  0.618
2016 Tolun G, Vijayasarathy C, Huang R, Zeng Y, Li Y, Sieving PA, Heymann JB, Steven AC. Retinoschisin at 4 Å Resolution from cryo-EM: A Junctional Model of Back-to-Back Octamers for Adhesion in the Retina Biophysical Journal. 110: 348a. DOI: 10.1016/J.Bpj.2015.11.1871  0.738
2015 Dearborn AD, Wall JS, Cheng N, Heymann JB, Kajava AV, Varkey J, Langen R, Steven AC. α-Synuclein Amyloid Fibrils with Two Entwined, Asymmetrically Associated, Protofibrils. The Journal of Biological Chemistry. PMID 26644467 DOI: 10.1074/Jbc.M115.698787  0.502
2015 Aksyuk AA, Newcomb WW, Cheng N, Winkler DC, Fontana J, Heymann JB, Steven AC. Subassemblies and Asymmetry in Assembly of Herpes Simplex Virus Procapsid. Mbio. 6. PMID 26443463 DOI: 10.1128/Mbio.01525-15  0.578
2014 McHugh CA, Fontana J, Nemecek D, Cheng N, Aksyuk AA, Heymann JB, Winkler DC, Lam AS, Wall JS, Steven AC, Hoiczyk E. A virus capsid-like nanocompartment that stores iron and protects bacteria from oxidative stress. The Embo Journal. 33: 1896-911. PMID 25024436 DOI: 10.15252/Embj.201488566  0.44
2013 Keller PW, Huang RK, England MR, Waki K, Cheng N, Heymann JB, Craven RC, Freed EO, Steven AC. A two-pronged structural analysis of retroviral maturation indicates that core formation proceeds by a disassembly-reassembly pathway rather than a displacive transition. Journal of Virology. 87: 13655-64. PMID 24109217 DOI: 10.1128/Jvi.01408-13  0.755
2013 Cardone G, Heymann JB, Steven AC. One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions Journal of Structural Biology. 184: 226-236. PMID 23954653 DOI: 10.1016/J.Jsb.2013.08.002  0.496
2013 Nemecek D, Boura E, Wu W, Cheng N, Plevka P, Qiao J, Mindich L, Heymann JB, Hurley JH, Steven AC. Subunit folds and maturation pathway of a dsRNA virus capsid. Structure (London, England : 1993). 21: 1374-83. PMID 23891288 DOI: 10.1016/J.Str.2013.06.007  0.547
2013 Heymann JB, Bartho JD, Rybakova D, Venugopal HP, Winkler DC, Sen A, Hurst MR, Mitra AK. Three-dimensional structure of the toxin-delivery particle antifeeding prophage of Serratia entomophila. The Journal of Biological Chemistry. 288: 25276-84. PMID 23857636 DOI: 10.1074/Jbc.M113.456145  0.367
2013 Heymann JB, Winkler DC, Yim YI, Eisenberg E, Greene LE, Steven AC. Clathrin-coated vesicles from brain have small payloads: a cryo-electron tomographic study. Journal of Structural Biology. 184: 43-51. PMID 23688956 DOI: 10.1016/J.Jsb.2013.05.006  0.512
2012 Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, et al. Data management challenges in three-dimensional EM. Nature Structural & Molecular Biology. 19: 1203-7. PMID 23211764 DOI: 10.1038/Nsmb.2426  0.711
2012 Cardone G, Heymann JB, Cheng N, Trus BL, Steven AC. Procapsid assembly, maturation, nuclear exit: dynamic steps in the production of infectious herpesvirions. Advances in Experimental Medicine and Biology. 726: 423-39. PMID 22297525 DOI: 10.1007/978-1-4614-0980-9_19  0.516
2012 Fontana J, Cardone G, Heymann JB, Winkler DC, Steven AC. Structural changes in influenza virus at low ph characterized by cryo-electron tomography Journal of Virology. 86: 2919-2929. PMID 22258245 DOI: 10.1128/Jvi.06698-11  0.45
2012 Müller WG, Heymann JB, Nagashima K, Guttmann P, Werner S, Rehbein S, Schneider G, McNally JG. Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography. Journal of Structural Biology. 177: 179-92. PMID 22155291 DOI: 10.1016/J.Jsb.2011.11.025  0.339
2011 Nemecek D, Cheng N, Qiao J, Mindich L, Steven AC, Heymann JB. Stepwise expansion of the bacteriophage Ï•6 procapsid: possible packaging intermediates. Journal of Molecular Biology. 414: 260-71. PMID 22019738 DOI: 10.1016/J.Jmb.2011.10.004  0.524
2011 Keller PW, Adamson CS, Heymann JB, Freed EO, Steven AC. HIV-1 maturation inhibitor bevirimat stabilizes the immature Gag lattice. Journal of Virology. 85: 1420-8. PMID 21106735 DOI: 10.1128/Jvi.01926-10  0.726
2010 Schneider G, Guttmann P, Heim S, Rehbein S, Mueller F, Nagashima K, Heymann JB, Müller WG, McNally JG. Three-dimensional cellular ultrastructure resolved by X-ray microscopy. Nature Methods. 7: 985-7. PMID 21076419 DOI: 10.1038/Nmeth.1533  0.306
2010 Nemecek D, Heymann JB, Qiao J, Mindich L, Steven AC. Cryo-electron tomography of bacteriophage φ6 procapsids shows random occupancy of the binding sites for RNA polymerase and packaging NTPase Journal of Structural Biology. 171: 389-396. PMID 20538059 DOI: 10.1016/J.Jsb.2010.06.005  0.489
2010 Kotova S, Grundy GJ, Ramon-Maiques S, Dimitriadis EK, Heymann JB, Steven AC, Gellert M, Yang W. Organization of RAG1/2 and RSS DNA in the Post-Cleavage Complex Biophysical Journal. 98: 189a. DOI: 10.1016/J.Bpj.2009.12.4230  0.509
2009 Grundy GJ, Ramón-Maiques S, Dimitriadis EK, Kotova S, Biertümpfel C, Heymann JB, Steven AC, Gellert M, Yang W. Initial Stages of V(D)J Recombination: The Organization of RAG1/2 and RSS DNA in the Postcleavage Complex Molecular Cell. 35: 217-227. PMID 19647518 DOI: 10.1016/J.Molcel.2009.06.022  0.519
2008 Heymann JB, Butan C, Winkler DC, Craven RC, Steven AC. Irregular and Semi-Regular Polyhedral Models for Rous Sarcoma Virus Cores. Computational and Mathematical Methods in Medicine. 9: 197-210. PMID 19122884 DOI: 10.1080/17486700802168106  0.575
2008 Sen A, Heymann JB, Cheng N, Qiao J, Mindich L, Steven AC. Initial location of the RNA-dependent RNA polymerase in the bacteriophage Φ6 procapsid determined by cryo-electron microscopy Journal of Biological Chemistry. 283: 12227-12231. PMID 18287088 DOI: 10.1074/Jbc.M710508200  0.527
2008 Butan C, Winkler DC, Heymann JB, Craven RC, Steven AC. RSV capsid polymorphism correlates with polymerization efficiency and envelope glycoprotein content: implications that nucleation controls morphogenesis. Journal of Molecular Biology. 376: 1168-81. PMID 18206161 DOI: 10.1016/J.Jmb.2007.12.003  0.53
2008 Heymann JB, Cardone G, Winkler DC, Steven AC. Computational resources for cryo-electron tomography in Bsoft Journal of Structural Biology. 161: 232-242. PMID 17869539 DOI: 10.1016/J.Jsb.2007.08.002  0.527
2007 Heymann JB, Belnap DM. Bsoft: image processing and molecular modeling for electron microscopy. Journal of Structural Biology. 157: 3-18. PMID 17011211 DOI: 10.1016/J.Jsb.2006.06.006  0.667
2006 Harris A, Cardone G, Winkler DC, Heymann JB, Brecher M, White JM, Steven AC. Influenza virus pleiomorphy characterized by cryoelectron tomography. Proceedings of the National Academy of Sciences of the United States of America. 103: 19123-7. PMID 17146053 DOI: 10.1073/Pnas.0607614103  0.526
2006 Iancu CV, Wright ER, Heymann JB, Jensen GJ. A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography. Journal of Structural Biology. 153: 231-40. PMID 16427786 DOI: 10.1016/J.Jsb.2005.12.004  0.751
2006 Heymann JB, Chagoyen M, Belnap DM. Corrigendum to “Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology” [J. Struct. Biol. 151 (2005) 196–207] Journal of Structural Biology. 153: 312. DOI: 10.1016/J.Jsb.2005.11.012  0.662
2005 Iancu CV, Wright ER, Benjamin J, Tivol WF, Dias DP, Murphy GE, Morrison RC, Heymann JB, Jensen GJ. A "flip-flop" rotation stage for routine dual-axis electron cryotomography. Journal of Structural Biology. 151: 288-97. PMID 16129619 DOI: 10.1016/J.Jsb.2005.07.004  0.773
2005 Heymann JB, Chagoyen M, Belnap DM. Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology. Journal of Structural Biology. 151: 196-207. PMID 16043364 DOI: 10.1016/J.Jsb.2005.06.001  0.67
2005 Leong PA, Heymann JB, Jensen GJ. Peach: a simple Perl-based system for distributed computation and its application to cryo-EM data processing. Structure (London, England : 1993). 13: 505-11. PMID 15837189 DOI: 10.1016/J.Str.2005.01.015  0.511
2005 Steven AC, Heymann JB, Cheng N, Trus BL, Conway JF. Virus maturation: Dynamics and mechanism of a stabilizing structural transition that leads to infectivity Current Opinion in Structural Biology. 15: 227-236. PMID 15837183 DOI: 10.1016/J.Sbi.2005.03.008  0.57
2005 Ortega J, Heymann JB, Kajava AV, Ustrell V, Rechsteiner M, Steven AC. The axial channel of the 20S proteasome opens upon binding of the PA200 activator. Journal of Molecular Biology. 346: 1221-7. PMID 15713476 DOI: 10.1016/J.Jmb.2004.12.049  0.518
2005 Heymann JB, Iwasaki K, Yim YI, Cheng N, Belnap DM, Greene LE, Eisenberg E, Steven AC. Visualization of the binding of Hsc70 ATPase to clathrin baskets: implications for an uncoating mechanism. The Journal of Biological Chemistry. 280: 7156-61. PMID 15596443 DOI: 10.1074/Jbc.M411712200  0.71
2005 Iancu CV, Murphy GE, Wright ER, Benjamin J, Tivol WF, Dias DP, Heymann JB, Jensen G. Recent Advances in Electron Cryotomography and their Application to Imaging Purified Protein Complexes, Isolated Organelles, and Small Cells Microscopy and Microanalysis. 11. DOI: 10.1017/S1431927605509255  0.653
2004 Heymann JB, Conway JF, Steven AC. Molecular dynamics of protein complexes from four-dimensional cryo-electron microscopy Journal of Structural Biology. 147: 291-301. PMID 15450298 DOI: 10.1016/J.Jsb.2004.02.006  0.557
2004 Heymann JB, Conway JF, Steven AC. Macromolecular dynamics from multiple particle analysis: Classifying distinct conformational states by generalized projection matching Microscopy and Microanalysis. 10: 30-31. DOI: 10.1017/S1431927604881741  0.468
2003 Grünewald K, Desai P, Winkler DC, Heymann JB, Belnap DM, Baumeister W, Steven AC. Three-dimensional structure of herpes simplex virus from cryo-electron tomography. Science (New York, N.Y.). 302: 1396-8. PMID 14631040 DOI: 10.1126/Science.1090284  0.728
2003 Heymann JB, Cheng N, Newcomb WW, Trus BL, Brown JC, Steven AC. Dynamics of herpes simplex virus capsid maturation visualized by time-lapse cryo-electron microscopy. Nature Structural Biology. 10: 334-41. PMID 12704429 DOI: 10.1038/Nsb922  0.571
2001 Trus BL, Heymann JB, Nealon K, Cheng N, Newcomb WW, Brown JC, Kedes DH, Steven AC. Capsid structure of Kaposi's sarcoma-associated herpesvirus, a gammaherpesvirus, compared to those of an alphaherpesvirus, herpes simplex virus type 1, and a betaherpesvirus, cytomegalovirus. Journal of Virology. 75: 2879-90. PMID 11222713 DOI: 10.1128/Jvi.75.6.2879-2890.2001  0.535
2001 Murata K, Mitsuoka K, Hirai T, Walz T, Agre P, Heymann JB, Engel A, Fujiyoshi Y. Molecular basis of water selectivity on aquaporin-1 Kidney International. 60: 399. DOI: 10.1046/J.1523-1755.2001.00821-5.X  0.71
2000 Müller DJ, Heymann JB, Oesterhelt F, Möller C, Gaub H, Büldt G, Engel A. Atomic force microscopy of native purple membrane. Biochimica Et Biophysica Acta. 1460: 27-38. PMID 10984588 DOI: 10.1016/S0005-2728(00)00127-4  0.484
2000 de Groot BL, Heymann JB, Engel A, Mitsuoka K, Fujiyoshi Y, Grubmüller H. The fold of human aquaporin 1. Journal of Molecular Biology. 300: 987-94. PMID 10891283 DOI: 10.1006/Jmbi.2000.3913  0.54
2000 Heymann JB, Pfeiffer M, Hildebrandt V, Kaback HR, Fotiadis D, Groot B, Engel A, Oesterhelt D, Müller DJ. Conformations of the rhodopsin third cytoplasmic loop grafted onto bacteriorhodopsin. Structure (London, England : 1993). 8: 643-53. PMID 10873864 DOI: 10.1016/S0969-2126(00)00151-9  0.475
2000 Heymann JB, Engel A. Structural clues in the sequences of the aquaporins. Journal of Molecular Biology. 295: 1039-53. PMID 10656809 DOI: 10.1006/Jmbi.1999.3413  0.476
1999 Heymann JB, Engel A. Aquaporins: Phylogeny, Structure, and Physiology of Water Channels. News in Physiological Sciences : An International Journal of Physiology Produced Jointly by the International Union of Physiological Sciences and the American Physiological Society. 14: 187-193. PMID 11390849 DOI: 10.1152/Physiologyonline.1999.14.5.187  0.431
1999 Heymann JB, Müller DJ, Landau EM, Rosenbusch JP, Pebay-Peyroula E, Büldt G, Engel A. Charting the surfaces of the purple membrane. Journal of Structural Biology. 128: 243-9. PMID 10633063 DOI: 10.1006/Jsbi.1999.4180  0.481
1999 Mitsuoka K, Murata K, Walz T, Hirai T, Agre P, Heymann JB, Engel A, Fujiyoshi Y. The structure of aquaporin-1 at 4.5-A resolution reveals short alpha-helices in the center of the monomer. Journal of Structural Biology. 128: 34-43. PMID 10600556 DOI: 10.1006/Jsbi.1999.4177  0.703
1998 Heymann JB, Agre P, Engel A. Progress on the structure and function of aquaporin 1. Journal of Structural Biology. 121: 191-206. PMID 9615438 DOI: 10.1006/Jsbi.1997.3951  0.617
1998 Scheuring S, Müller DJ, Ringler P, Heymann JB, Engel A. A Novel Preparation Method for High Resolution AFM Introduced With 2d-Streptavidin Crystals Grown on a Biotinlipid Monolayer Microscopy and Microanalysis. 4: 312-313. DOI: 10.1017/S1431927600021681  0.418
1998 Hasler L, Heymann JB, Walz T, Kistler J, Engel A. 2D crystallization of membrane protein in the presence of lipids Biology of the Cell. 90: 284-284. DOI: 10.1016/S0248-4900(98)80060-9  0.578
1997 Heymann JB, Müller DJ, Mitsuoka K, Engel A. Electron and atomic force microscopy of membrane proteins. Current Opinion in Structural Biology. 7: 543-549. PMID 9266177 DOI: 10.1016/S0959-440X(97)80120-0  0.483
1997 Walz T, Hirai T, Murata K, Heymann JB, Mitsuoka K, Fujiyoshi Y, Smith BL, Agre P, Engel A. The three-dimensional structure of aquaporin-1. Nature. 387: 624-7. PMID 9177353 DOI: 10.1038/42512  0.711
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