John Tyson, Ph.D. - Publications

Affiliations: 
Biology Virginia Polytechnic Institute and State University, Blacksburg, VA, United States 
Area:
cell cycle modeling

316 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Jalihal AP, Kraikivski P, Murali TM, Tyson JJ. Modeling and Analysis of the Macronutrient Signaling Network in Budding Yeast. Molecular Biology of the Cell. mbcE20020117. PMID 34495680 DOI: 10.1091/mbc.E20-02-0117  1
2021 Hogan CA, Jassem AN, Sbihi H, Joffres Y, Tyson JR, Noftall K, Taylor M, Lee T, Fjell C, Wilmer A, Galbraith J, Romney MG, Henry B, Krajden M, Galanis E, et al. Rapid Increase in SARS-CoV-2 P.1 Lineage Leading to Codominance with B.1.1.7 Lineage, British Columbia, Canada, January-April 2021. Emerging Infectious Diseases. 27. PMID 34388358 DOI: 10.3201/eid2711.211190  1
2021 Skowronski DM, Setayeshgar S, Zou M, Prystajecky N, Tyson JR, Galanis E, Naus M, Patrick DM, Sbihi H, El Adam S, Henry B, Hoang LMN, Sadarangani M, Jassem AN, Krajden M. Single-dose mRNA vaccine effectiveness against SARS-CoV-2, including Alpha and Gamma variants: a test-negative design in adults 70 years and older in British Columbia, Canada. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 34244723 DOI: 10.1093/cid/ciab616  0.12
2021 Mosig RA, Castaneda AN, Deslauriers JC, Frazier LP, He KL, Maghzian N, Pokharel A, Schrier CT, Zhu L, Koike N, Tyson JJ, Green CB, Takahashi JS, Kojima S. Natural antisense transcript of , regulates the amplitude of the mouse circadian clock. Genes & Development. PMID 34016691 DOI: 10.1101/gad.343541.120  1
2021 Novák B, Tyson JJ. Computational modelling of chromosome re-replication in mutant strains of fission yeast. Molecular Biology of the Cell. mbcE20090610. PMID 33534609 DOI: 10.1091/mbc.E20-09-0610  1
2021 Novák B, Tyson JJ. Mechanisms of signalling-memory governing progression through the eukaryotic cell cycle. Current Opinion in Cell Biology. 69: 7-16. PMID 33412443 DOI: 10.1016/j.ceb.2020.12.003  1
2020 Kim JK, Tyson JJ. Misuse of the Michaelis-Menten rate law for protein interaction networks and its remedy. Plos Computational Biology. 16: e1008258. PMID 33090989 DOI: 10.1371/journal.pcbi.1008258  1
2020 Xu C, Weston BR, Tyson JJ, Cao Y. Cell cycle control and environmental response by second messengers in Caulobacter crescentus. Bmc Bioinformatics. 21: 408. PMID 32998723 DOI: 10.1186/s12859-020-03687-z  1
2020 Tyson JR, James P, Stoddart D, Sparks N, Wickenhagen A, Hall G, Choi JH, Lapointe H, Kamelian K, Smith AD, Prystajecky N, Goodfellow I, Wilson SJ, Harrigan R, Snutch TP, et al. Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore. Biorxiv : the Preprint Server For Biology. PMID 32908977 DOI: 10.1101/2020.09.04.283077  1
2020 Tyson J, Bundy K, Roach C, Douglas H, Ventura V, Segars MF, Schwartz O, Simpson CL. Mechanisms of the Osteogenic Switch of Smooth Muscle Cells in Vascular Calcification: WNT Signaling, BMPs, Mechanotransduction, and EndMT. Bioengineering (Basel, Switzerland). 7. PMID 32781528 DOI: 10.3390/bioengineering7030088  0.01
2020 Banerjee A, Adames N, Peccoud J, Tyson JJ. A stochastic model for error correction of kinetochore-microtubule attachments in budding yeast. Plos One. 15: e0236293. PMID 32760074 DOI: 10.1371/Journal.Pone.0236293  1
2020 Reddington K, Eccles D, O'Grady J, Drown DM, Hansen LH, Nielsen TK, Ducluzeau AL, Leggett RM, Heavens D, Peel N, Snutch TP, Bayega A, Oikonomopoulos S, Ragoussis I, Barry T, ... ... Tyson JR, et al. Corrigendum to: Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function. Gigascience. 9. PMID 32578857 DOI: 10.1093/gigascience/giaa074  1
2020 Reddington K, Eccles D, O'Grady J, Drown DM, Hansen LH, Nielsen TK, Ducluzeau AL, Leggett RM, Heavens D, Peel N, Snutch TP, Bayega A, Oikonomopoulos S, Ragoussis I, Barry T, ... ... Tyson JR, et al. Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function. Gigascience. 9. PMID 32520351 DOI: 10.1093/Gigascience/Giaa053  1
2020 Gallegos JE, Adames NR, Rogers MF, Kraikivski P, Ibele A, Nurzynski-Loth K, Kudlow E, Murali TM, Tyson JJ, Peccoud J. Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants. Npj Systems Biology and Applications. 6: 11. PMID 32376972 DOI: 10.1038/s41540-020-0134-z  1
2020 Tyson JJ, Novak B. A Dynamical Paradigm for Molecular Cell Biology. Trends in Cell Biology. PMID 32362451 DOI: 10.1016/J.Tcb.2020.04.002  1
2020 Ahmadian M, Tyson JJ, Peccoud J, Cao Y. A hybrid stochastic model of the budding yeast cell cycle. Npj Systems Biology and Applications. 6: 7. PMID 32221305 DOI: 10.1038/s41540-020-0126-z  1
2020 Heldt FS, Tyson JJ, Cross FR, Novák B. A Single Light-Responsive Sizer Can Control Multiple-Fission Cycles in Chlamydomonas. Current Biology : Cb. PMID 31928875 DOI: 10.1016/j.cub.2019.12.026  1
2020 House EM, Tyson JW. Psychosis in Children and Adolescents: A Guide for Clinicians. Child and Adolescent Psychiatric Clinics of North America. 29: xv-xvi. PMID 31708056 DOI: 10.1016/j.chc.2019.09.001  1
2020 Tyson JW, House EM, Donovan AL. Assessing Youth with Psychotic Experiences: A Phenomenological Approach. Child and Adolescent Psychiatric Clinics of North America. 29: 1-13. PMID 31708039 DOI: 10.1016/j.chc.2019.08.002  1
2019 Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, et al. Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome. Nature Methods. PMID 31819268 DOI: 10.1038/S41592-019-0697-Z  1
2019 Clark DJ, Moore CM, Flanagan M, Bocxlaer KV, Piperaki ET, Yardley V, Croft SL, Tyson J, Whitehouse SP, O'Halloran J, Krishna S, Staines HM. An efficient and novel technology for the extraction of parasite genomic DNA from whole blood or culture. Biotechniques. PMID 31774301 DOI: 10.2144/btn-2019-0086  1
2019 Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, et al. Nanopore native RNA sequencing of a human poly(A) transcriptome. Nature Methods. PMID 31740818 DOI: 10.1038/S41592-019-0617-2  1
2019 Ahmadian M, Tyson JJ, Cao Y. A stochastic model of size control in the budding yeast cell cycle. Bmc Bioinformatics. 20: 322. PMID 31216979 DOI: 10.1186/s12859-019-2839-9  1
2019 Clarke R, Tyson JJ, Tan M, Baumann WT, Jin L, Xuan J, Wang Y. Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers. Endocrine-Related Cancer. PMID 30965282 DOI: 10.1530/Erc-18-0309  1
2019 Palmisano A, Hoops S, Watson LT, Jones TC, Tyson JJ, Shaffer CA. Efficiently Encoding Complex Biochemical Models with the Multistate Model Builder (MSMB). Methods in Molecular Biology (Clifton, N.J.). 1945: 119-139. PMID 30945244 DOI: 10.1007/978-1-4939-9102-0_5  1
2019 Chen C, Whitney IP, Banerjee A, Sacristan C, Sekhri P, Kern DM, Fontan A, Kops GJPL, Tyson JJ, Cheeseman IM, Joglekar AP. Ectopic Activation of the Spindle Assembly Checkpoint Signaling Cascade Reveals Its Biochemical Design. Current Biology : Cb. 29: 104-119.e10. PMID 30595520 DOI: 10.1016/J.Cub.2018.11.054  1
2019 Tyson JJ, Laomettachit T, Kraikivski P. Modeling the dynamic behavior of biochemical regulatory networks. Journal of Theoretical Biology. 462: 514-527. PMID 30502409 DOI: 10.1016/j.jtbi.2018.11.034  1
2018 Jones TC, Hoops S, Watson LT, Palmisano A, Tyson JJ, Shaffer CA. JigCell Model Connector: building large molecular network models from components. Simulation. 94: 993-1008. PMID 31303682 DOI: 10.1177/0037549717754121  1
2018 Battogtokh D, Tyson JJ. Deciphering the Dynamics of Interlocked Feedback Loops in a Model of the Mammalian Circadian Clock. Biophysical Journal. 115: 2055-2066. PMID 30473017 DOI: 10.1016/j.bpj.2018.10.005  1
2018 Heldt FS, Lunstone R, Tyson JJ, Novák B. Dilution and titration of cell-cycle regulators may control cell size in budding yeast. Plos Computational Biology. 14: e1006548. PMID 30356259 DOI: 10.1371/journal.pcbi.1006548  1
2018 Weston BR, Li L, Tyson JJ. Mathematical Analysis of Cytokine-Induced Differentiation of Granulocyte-Monocyte Progenitor Cells. Frontiers in Immunology. 9: 2048. PMID 30279691 DOI: 10.3389/Fimmu.2018.02048  1
2018 Novák B, Heldt FS, Tyson JJ. Genome Stability during Cell Proliferation: A Systems Analysis of the Molecular Mechanisms Controlling Progression through the Eukaryotic Cell Cycle. Current Opinion in Systems Biology. 9: 22-31. PMID 30221209 DOI: 10.1016/J.Coisb.2018.02.004  1
2018 Redford L, Alhilal G, Needham S, O'Brien O, Coaker J, Tyson J, Amorim LM, Middleton I, Izuogu O, Arends M, Oniscu A, Alonso ÁM, Laguna SM, Gallon R, Sheth H, et al. A novel panel of short mononucleotide repeats linked to informative polymorphisms enabling effective high volume low cost discrimination between mismatch repair deficient and proficient tumours. Plos One. 13: e0203052. PMID 30157243 DOI: 10.1371/journal.pone.0203052  1
2018 Egolf A, Hoffman P, Mroczkowski MM, Prager LM, Tyson JW, Donise K. Training, Education, and Curriculum Development for the Pediatric Psychiatry Emergency Service. Child and Adolescent Psychiatric Clinics of North America. 27: 501-509. PMID 29933798 DOI: 10.1016/j.chc.2018.02.006  0.01
2018 Clark DJ, Tyson J, Sails AD, Krishna S, Staines HM. The current landscape of nucleic acid tests for filovirus detection. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 103: 27-36. PMID 29625392 DOI: 10.1016/j.jcv.2018.03.005  1
2018 Alles SR, Garcia E, Balasubramanyan S, Jones K, Tyson JR, Joy T, Snutch TP, Smith PA. Peripheral nerve injury increases contribution of L-type calcium channels to synaptic transmission in spinal lamina II: Role of α2δ-1 subunits. Molecular Pain. 14: 1744806918765806. PMID 29580153 DOI: 10.1177/1744806918765806  1
2018 Cain SM, Tyson JR, Choi HB, Ko R, Lin PJC, LeDue JM, Powell KL, Bernier LP, Rungta RL, Yang Y, Cullis PR, O'Brien TJ, MacVicar BA, Snutch TP. Ca3.2 drives sustained burst-firing, which is critical for absence seizure propagation in reticular thalamic neurons. Epilepsia. PMID 29468672 DOI: 10.1111/Epi.14018  1
2018 Battogtokh D, Kojima S, Tyson JJ. Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network. Plos Computational Biology. 14: e1005957. PMID 29447160 DOI: 10.1371/journal.pcbi.1005957  1
2018 Pratapa A, Adames N, Kraikivski P, Franzese N, Tyson JJ, Peccoud J, Murali TM, Berger B. CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. Bioinformatics (Oxford, England). PMID 29432533 DOI: 10.1093/Bioinformatics/Bty072  1
2018 Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, et al. Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature Biotechnology. PMID 29431738 DOI: 10.1038/Nbt.4060  1
2017 Chen M, Amos B, Watson LT, Tyson J, Cao Y, Shaffer C, Trosset M, Oguz C, Kakoti G. Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990127 DOI: 10.1109/Tcbb.2017.2773083  1
2017 Tyson JR, O'Neil NJ, Jain M, Olsen HE, Hieter P, Snutch TP. MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome. Genome Research. PMID 29273626 DOI: 10.1101/Gr.221184.117  1
2017 Bharadwaj A, Singh DP, Ritz A, Tegge AN, Poirel CL, Kraikivski P, Adames N, Luther K, Kale SD, Peccoud J, Tyson JJ, Murali TM. GraphSpace: stimulating interdisciplinary collaborations in network biology. Bioinformatics (Oxford, England). 33: 3134-3136. PMID 28957495 DOI: 10.7490/F1000Research.1114636.1  1
2017 Hopkins M, Tyson JJ, Novák B. Cell cycle transitions: a common role for stoichiometric inhibitors. Molecular Biology of the Cell. PMID 28931595 DOI: 10.1091/Mbc.E17-06-0349  1
2017 Jain M, Tyson JR, Loose M, Ip CLC, Eccles DA, O'Grady J, Malla S, Leggett RM, Wallerman O, Jansen HJ, Zalunin V, Birney E, Brown BL, Snutch TP, Olsen HE, et al. MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry. F1000research. 6: 760. PMID 28794860 DOI: 10.12688/F1000Research.11354.1  1
2017 Subramanian K, Tyson JJ. Spatiotemporal Models of the Asymmetric Division Cycle of Caulobacter crescentus. Results and Problems in Cell Differentiation. 61: 23-48. PMID 28409299 DOI: 10.1007/978-3-319-53150-2_2  1
2017 Oguz C, Watson LT, Baumann WT, Tyson JJ. Predicting network modules of cell cycle regulators using relative protein abundance statistics. Bmc Systems Biology. 11: 30. PMID 28241833 DOI: 10.1186/S12918-017-0409-1  1
2017 Cain SM, Bohnet B, LeDue J, Yung AC, Garcia E, Tyson JR, Alles SR, Han H, van den Maagdenberg AM, Kozlowski P, MacVicar BA, Snutch TP. In vivo imaging reveals that pregabalin inhibits cortical spreading depression and propagation to subcortical brain structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28223480 DOI: 10.1073/Pnas.1614447114  1
2016 Zachariae W, Tyson JJ. Cell Division: Flipping the Mitotic Switches. Current Biology : Cb. 26: R1272-R1274. PMID 27997836 DOI: 10.1016/j.cub.2016.11.007  0.01
2016 Barik D, Ball DA, Peccoud J, Tyson JJ. A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability. Plos Computational Biology. 12: e1005230. PMID 27935947 DOI: 10.1371/Journal.Pcbi.1005230  1
2016 Cain SM, Ahn S, Garcia E, Zhang Y, Waheed Z, Tyson JR, Yang Y, Van Sung T, Phillips AG, Snutch TP. Heantos-4, a natural plant extract used in the treatment of drug addiction, modulates T-type calcium channels and thalamocortical burst-firing. Molecular Brain. 9: 94. PMID 27919294 DOI: 10.1186/S13041-016-0274-7  1
2016 Gotoh T, Kim JK, Liu J, Vila-Caballer M, Stauffer PE, Tyson JJ, Finkielstein CV. Model-driven experimental approach reveals the complex regulatory distribution of p53 by the circadian factor Period 2. Proceedings of the National Academy of Sciences of the United States of America. PMID 27834218 DOI: 10.1073/pnas.1607984113  1
2016 Li F, Subramanian K, Chen M, Tyson JJ, Cao Y. A stochastic spatiotemporal model of a response-regulator network in the Caulobacter crescentus cell cycle. Physical Biology. 13: 035007. PMID 27345750 DOI: 10.1088/1478-3975/13/3/035007  1
2016 Battogtokh D, Tyson JJ. A Bistable Switch Mechanism for Stem Cell Domain Nucleation in the Shoot Apical Meristem. Frontiers in Plant Science. 7: 674. PMID 27242874 DOI: 10.3389/fpls.2016.00674  1
2016 Laomettachit T, Chen KC, Baumann WT, Tyson JJ. A Model of Yeast Cell-Cycle Regulation Based on a Standard Component Modeling Strategy for Protein Regulatory Networks. Plos One. 11: e0153738. PMID 27187804 DOI: 10.1371/Journal.Pone.0153738  1
2016 Samuel JP, Samuels JA, Brooks LE, Bell CS, Pedroza C, Molony DA, Tyson JE. Comparative effectiveness of antihypertensive treatment for older children with primary hypertension: study protocol for a series of n-of-1 randomized trials. Trials. 17: 16. PMID 26746195 DOI: 10.1186/s13063-015-1142-y  1
2016 Dawson WA, Schneider MD, Tyson JA, Jee MJ. The ellipticity distribution of ambiguously blended objects Astrophysical Journal. 816. DOI: 10.3847/0004-637X/816/1/11  1
2016 Stevenson DK, Wong RJ, Arnold CC, Pedroza C, Tyson JE. Phototherapy and the Risk of Photo-Oxidative Injury in Extremely Low Birth Weight Infants Clinics in Perinatology. DOI: 10.1016/j.clp.2016.01.005  1
2015 Kraikivski P, Chen KC, Laomettachit T, Murali TM, Tyson JJ. From START to FINISH: computational analysis of cell cycle control in budding yeast. Npj Systems Biology and Applications. 1: 15016. PMID 28725464 DOI: 10.1038/npjsba.2015.16  1
2015 Ip CL, Loose M, Tyson JR, de Cesare M, Brown BL, Jain M, Leggett RM, Eccles DA, Zalunin V, Urban JM, Piazza P, Bowden RJ, Paten B, Mwaigwisya S, Batty EM, et al. MinION Analysis and Reference Consortium: Phase 1 data release and analysis. F1000research. 4: 1075. PMID 26834992 DOI: 10.12688/F1000Research.7201.1  1
2015 Palmisano A, Hoops S, Watson LT, Jones TC, Tyson JJ, Shaffer CA. JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations. Bmc Systems Biology. 9: 95. PMID 26704692 DOI: 10.1186/S12918-015-0237-0  1
2015 Marrs CC, Pedroza C, Mendez-Figueroa H, Chauhan SP, Tyson JE. Infant Outcomes after Periviable Birth: External Validation of the Neonatal Research Network Estimator with the BEAM Trial. American Journal of Perinatology. PMID 26692201 DOI: 10.1055/s-0035-1569989  1
2015 Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, ... ... Tyson JJ, et al. The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-component and Metazoan-type Tyrosine Kinase Signaling. Genome Biology and Evolution. PMID 26615215 DOI: 10.1093/Gbe/Evv237  1
2015 Clarke R, Tyson JJ, Dixon JM. Endocrine resistance in breast cancer - An overview and update. Molecular and Cellular Endocrinology. PMID 26455641 DOI: 10.1016/j.mce.2015.09.035  1
2015 Parikh NA, Kennedy KA, Lasky RE, Tyson JE. Neurodevelopmental Outcomes of Extremely Preterm Infants Randomized to Stress Dose Hydrocortisone. Plos One. 10: e0137051. PMID 26376074 DOI: 10.1371/journal.pone.0137051  1
2015 Tyson J, Pedroza C, Wootton SH. Analyses of Large Data Bases and Pragmatic Clinical Trials: Advancing Comparative Effectiveness Research in a Learning Health Care System. American Journal of Perinatology. 32: 1095-7. PMID 26368912 DOI: 10.1055/s-0035-1562927  1
2015 Adames NR, Schuck PL, Chen KC, Murali TM, Tyson JJ, Peccoud J. Experimental testing of a new integrated model of the budding yeast Start transition. Molecular Biology of the Cell. 26: 3966-84. PMID 26310445 DOI: 10.1091/Mbc.E15-06-0358  1
2015 Feiner ZS, Chong SC, Knight CT, Lauer TE, Thomas MV, Tyson JT, Höök TO. Rapidly shifting maturation schedules following reduced commercial harvest in a freshwater fish. Evolutionary Applications. 8: 724-37. PMID 26240608 DOI: 10.1111/eva.12285  1
2015 Tavassoly I, Parmar J, Shajahan-Haq AN, Clarke R, Baumann WT, Tyson JJ. Dynamic Modeling of the Interaction Between Autophagy and Apoptosis in Mammalian Cells. Cpt: Pharmacometrics & Systems Pharmacology. 4: 263-72. PMID 26225250 DOI: 10.1002/psp4.29  1
2015 Subramanian K, Paul MR, Tyson JJ. Dynamical Localization of DivL and PleC in the Asymmetric Division Cycle of Caulobacter crescentus: A Theoretical Investigation of Alternative Models. Plos Computational Biology. 11: e1004348. PMID 26186202 DOI: 10.1371/Journal.Pcbi.1004348  1
2015 Tyson JJ, Novák B. Models in biology: lessons from modeling regulation of the eukaryotic cell cycle. Bmc Biology. 13: 46. PMID 26129844 DOI: 10.1186/S12915-015-0158-9  1
2015 Rysavy MA, Li L, Bell EF, Das A, Hintz SR, Stoll BJ, Vohr BR, Carlo WA, Shankaran S, Walsh MC, Tyson JE, Cotten CM, Smith PB, Murray JC, Colaizy TT, et al. Between-hospital variation in treatment and outcomes in extremely preterm infants. The New England Journal of Medicine. 372: 1801-11. PMID 25946279 DOI: 10.1056/NEJMoa1410689  1
2015 Rungta RL, Choi HB, Tyson JR, Malik A, Dissing-Olesen L, Lin PJ, Cain SM, Cullis PR, Snutch TP, MacVicar BA. The cellular mechanisms of neuronal swelling underlying cytotoxic edema. Cell. 161: 610-21. PMID 25910210 DOI: 10.1016/J.Cell.2015.03.029  1
2015 Tyson JA, Goldberg EM, Maroof AM, Xu Q, Petros TJ, Anderson SA. Duration of culture and sonic hedgehog signaling differentially specify PV versus SST cortical interneuron fates from embryonic stem cells. Development (Cambridge, England). 142: 1267-78. PMID 25804737 DOI: 10.1242/Dev.111526  1
2015 Carpenter D, Dhar S, Mitchell LM, Fu B, Tyson J, Shwan NA, Yang F, Thomas MG, Armour JA. Obesity, starch digestion and amylase: association between copy number variants at human salivary (AMY1) and pancreatic (AMY2) amylase genes. Human Molecular Genetics. 24: 3472-80. PMID 25788522 DOI: 10.1093/hmg/ddv098  1
2015 Hong T, Oguz C, Tyson JJ. A Mathematical Framework for Understanding Four-Dimensional Heterogeneous Differentiation of [Formula: see text] T Cells. Bulletin of Mathematical Biology. 77: 1046-64. PMID 25779890 DOI: 10.1007/s11538-015-0076-6  1
2015 Pappas A, Shankaran S, McDonald SA, Vohr BR, Hintz SR, Ehrenkranz RA, Tyson JE, Yolton K, Das A, Bara R, Hammond J, Higgins RD. Cognitive outcomes after neonatal encephalopathy. Pediatrics. 135: e624-34. PMID 25713280 DOI: 10.1542/peds.2014-1566  1
2015 Gérard C, Tyson JJ, Coudreuse D, Novák B. Cell cycle control by a minimal Cdk network. Plos Computational Biology. 11: e1004056. PMID 25658582 DOI: 10.1371/Journal.Pcbi.1004056  1
2015 Hu Z, Arrowsmith RL, Tyson JA, Mirabello V, Ge H, Eggleston IM, Botchway SW, Pantos GD, Pascu SI. A fluorescent Arg-Gly-Asp (RGD) peptide-naphthalenediimide (NDI) conjugate for imaging integrin α(v)β(3) in vitro. Chemical Communications (Cambridge, England). 51: 6901-4. PMID 25647279 DOI: 10.1039/C4Cc08265F  1
2015 Ogo OA, Tyson J, Cockell SJ, Howard A, Valentine RA, Ford D. The zinc finger protein ZNF658 regulates the transcription of genes involved in zinc homeostasis and affects ribosome biogenesis through the zinc transcriptional regulatory element. Molecular and Cellular Biology. 35: 977-87. PMID 25582195 DOI: 10.1128/MCB.01298-14  1
2015 Hintz SR, Barnes PD, Bulas D, Slovis TL, Finer NN, Wrage LA, Das A, Tyson JE, Stevenson DK, Carlo WA, Walsh MC, Laptook AR, Yoder BA, Van Meurs KP, Faix RG, et al. Neuroimaging and neurodevelopmental outcome in extremely preterm infants. Pediatrics. 135: e32-42. PMID 25554820 DOI: 10.1542/Peds.2014-0898  1
2015 Refuerzo JS, Viteri OA, Hutchinson M, Pedroza C, Blackwell SC, Tyson JE, Ramin SM. The effects of metformin on weight loss in women with gestational diabetes: a pilot randomized, placebo-controlled trial. American Journal of Obstetrics and Gynecology. 212: 389.e1-9. PMID 25526875 DOI: 10.1016/j.ajog.2014.12.019  1
2015 Davis AS, Gantz MG, Do B, Shankaran S, Hamrick SE, Kennedy KA, Tyson JE, Chalak LF, Laptook AR, Goldstein RF, Hintz SR, Das A, Higgins RD, Ball MB, Hale EC, et al. Serial aEEG recordings in a cohort of extremely preterm infants: feasibility and safety. Journal of Perinatology : Official Journal of the California Perinatal Association. 35: 373-8. PMID 25474559 DOI: 10.1038/jp.2014.217  1
2015 Tyson JJ, Novak B. Bistability, oscillations, and traveling waves in frog egg extracts. Bulletin of Mathematical Biology. 77: 796-816. PMID 25185750 DOI: 10.1007/S11538-014-0009-9  1
2015 Cain SM, Tyson JR, Jones KL, Snutch TP. Thalamocortical neurons display suppressed burst-firing due to an enhanced Ih current in a genetic model of absence epilepsy. PflüGers Archiv : European Journal of Physiology. 467: 1367-82. PMID 24953239 DOI: 10.1007/S00424-014-1549-4  1
2015 Gupta-Malhotra M, Banker A, Shete S, Hashmi SS, Tyson JE, Barratt MS, Hecht JT, Milewicz DM, Boerwinkle E. Essential hypertension vs. secondary hypertension among children. American Journal of Hypertension. 28: 73-80. PMID 24842390 DOI: 10.1093/Ajh/Hpu083  1
2015 DuFour MR, May CJ, Roseman EF, Ludsin SA, Vandergoot CS, Pritt JJ, Fraker ME, Davis JJ, Tyson JT, Miner JG, Marschall EA, Mayer CM. Portfolio theory as a management tool to guide conservation and restoration of multi-stock fish populations Ecosphere. 6. DOI: 10.1890/Es15-00237.1  1
2015 Morris SA, Payne WA, Sami S, Wang Y, LeMaire SA, Tyson JE, Krishnamurthy R, Milewicz DM. Arterial tortuosity and change with age in young patients with aortopathy Journal of Cardiovascular Magnetic Resonance. 1-2. DOI: 10.1186/1532-429X-17-S1-P403  1
2015 Ostroumov SA, Johnson ME, Tyson JF, Xing B. Immobilization of scandium and other chemical elements in systems with aquatic macrophyte Russian Journal of General Chemistry. 85: 2929-2932. DOI: 10.1134/S1070363215130083  1
2015 Tyson JA. Conference summary Journal of Instrumentation. 10. DOI: 10.1088/1748-0221/10/05/C05022  1
2015 Tyson JA. The context as host: Hans Haacke's art of textual exhibition Word and Image. 31: 213-232. DOI: 10.1080/02666286.2015.1032516  1
2015 Harrington CF, Clough R, Hill SJ, Madrid Y, Tyson JF. Atomic Spectrometry Update: review of advances in elemental speciation Journal of Analytical Atomic Spectrometry. 30: 1427-1468. DOI: 10.1039/c5ja90028j  1
2015 Carlisle D, Tyson J, Nieswandt M. Fostering spatial skill acquisition by general chemistry students Chemistry Education Research and Practice. 16: 478-517. DOI: 10.1039/C4Rp00228H  1
2015 Heinonen J, Koskela P, Shanmugalingam N, Tyson JT. Sobolev spaces on metric measure spaces: An approach based on upper gradients Sobolev Spaces On Metric Measure Spaces: An Approach Based On Upper Gradients. 1-434. DOI: 10.1017/CBO9781316135914  1
2015 Fraker ME, Anderson EJ, May CJ, Chen KY, Davis JJ, DeVanna KM, DuFour MR, Marschall EA, Mayer CM, Miner JG, Pangle KL, Pritt JJ, Roseman EF, Tyson JT, Zhao Y, et al. Stock-specific advection of larval walleye (Sander vitreus) in western Lake Erie: Implications for larval growth, mixing, and stock discrimination Journal of Great Lakes Research. 41: 830-845. DOI: 10.1016/J.Jglr.2015.04.008  1
2015 Marin Jarrin JR, Pangle KL, Reichert JM, Johnson TB, Tyson J, Ludsin SA. Influence of habitat heterogeneity on the foraging ecology of first feeding yellow perch larvae, Perca flavescens, in western Lake Erie Journal of Great Lakes Research. 41: 208-214. DOI: 10.1016/j.jglr.2014.12.024  1
2015 Newman JA, Abate A, Abdalla FB, Allam S, Allen SW, Ansari R, Bailey S, Barkhouse WA, Beers TC, Blanton MR, Brodwin M, Brownstein JR, Brunner RJ, Kind MC, Cervantes-Cota JL, ... ... Tyson JA, et al. Corrigendum to "spectroscopic needs for imaging dark energy experiments" [Astropart. Phys. 63 (2015) 81-100] Astroparticle Physics. 65: 112-113. DOI: 10.1016/J.Astropartphys.2014.12.008  1
2015 Tyson JA, Calatayud DG, Mirabello V, Mao B, Pascu SI. Labeling of Graphene, Graphene Oxides, and of Their Congeners: Imaging and Biosensing Applications of Relevance to Cancer Theranostics Advances in Inorganic Chemistry. DOI: 10.1016/Bs.Adioch.2015.09.007  1
2015 Magnani V, Tyson JT, Vittone D. On transversal submanifolds and their measure Journal D'Analyse Mathematique. 125: 319-351. DOI: 10.1007/S11854-015-0010-8  1
2014 Mosquera RA, Avritscher EB, Samuels CL, Harris TS, Pedroza C, Evans P, Navarro F, Wootton SH, Pacheco S, Clifton G, Moody S, Franzini L, Zupancic J, Tyson JE. Effect of an enhanced medical home on serious illness and cost of care among high-risk children with chronic illness: a randomized clinical trial. Jama. 312: 2640-8. PMID 25536255 DOI: 10.1001/Jama.2014.16419  1
2014 Shankaran S, Laptook AR, Pappas A, McDonald SA, Das A, Tyson JE, Poindexter BB, Schibler K, Bell EF, Heyne RJ, Pedroza C, Bara R, Van Meurs KP, Grisby C, Huitema CM, et al. Effect of depth and duration of cooling on deaths in the NICU among neonates with hypoxic ischemic encephalopathy: a randomized clinical trial. Jama. 312: 2629-39. PMID 25536254 DOI: 10.1001/Jama.2014.16058  1
2014 McFarland DF, Tyson JT, Van Saun RJ. Nonnutritional factors influencing response to the nutritional program. The Veterinary Clinics of North America. Food Animal Practice. 30: 745-64. PMID 25441540 DOI: 10.1016/j.cvfa.2014.08.001  1
2014 Arnold C, Pedroza C, Tyson JE. Phototherapy in ELBW newborns: does it work? Is it safe? The evidence from randomized clinical trials. Seminars in Perinatology. 38: 452-64. PMID 25308614 DOI: 10.1053/j.semperi.2014.08.008  1
2014 Schreiner MS, Feltman D, Wiswell T, Wootton S, Arnold C, Tyson J, Lantos JD. When is waiver of consent appropriate in a neonatal clinical trial? Pediatrics. 134: 1006-12. PMID 25287456 DOI: 10.1542/peds.2014-0207  1
2014 Tyson JY, Vargas P, Cianciotto NP. The novel Legionella pneumophila type II secretion substrate NttC contributes to infection of amoebae Hartmannella vermiformis and Willaertia magna. Microbiology (Reading, England). 160: 2732-44. PMID 25253612 DOI: 10.1099/Mic.0.082750-0  1
2014 Tyson JE, Walsh M, D'Angio CT. Comparative effectiveness trials: generic misassumptions underlying the SUPPORT controversy. Pediatrics. 134: 651-4. PMID 25201795 DOI: 10.1542/peds.2013-4176  0.08
2014 Black HA, Khan FF, Tyson J, Al Armour J. Inferring mechanisms of copy number change from haplotype structures at the human DEFA1A3 locus. Bmc Genomics. 15: 614. PMID 25048054 DOI: 10.1186/1471-2164-15-614  1
2014 Natarajan G, Shankaran S, Pappas A, Bann C, Tyson JE, McDonald S, Das A, Hintz S, Vohr B, Higgins R. Functional status at 18 months of age as a predictor of childhood disability after neonatal hypoxic-ischemic encephalopathy. Developmental Medicine and Child Neurology. 56: 1052-8. PMID 24957482 DOI: 10.1111/dmcn.12512  1
2014 Sheth H, Northwood E, Elliott F, Jackson M, Koref MS, Tyson J, Daly A, O'Halloran J, Sheth J, Sheth F, Parikh K, Bishop DT, Burn J. Point of care testing for improving risk- benefit ratio of aspirin and warfarin. Molecular Cytogenetics. 7: I54. PMID 24949102 DOI: 10.1186/1755-8166-7-S1-I54  1
2014 Tyson JJ, Novak B. Control of cell growth, division and death: information processing in living cells. Interface Focus. 4: 20130070. PMID 24904735 DOI: 10.1098/Rsfs.2013.0070  1
2014 Oguz C, Palmisano A, Laomettachit T, Watson LT, Baumann WT, Tyson JJ. A stochastic model correctly predicts changes in budding yeast cell cycle dynamics upon periodic expression of CLN2. Plos One. 9: e96726. PMID 24816736 DOI: 10.1371/Journal.Pone.0096726  1
2014 Chen C, Baumann WT, Xing J, Xu L, Clarke R, Tyson JJ. Mathematical models of the transitions between endocrine therapy responsive and resistant states in breast cancer. Journal of the Royal Society, Interface / the Royal Society. 11: 20140206. PMID 24806707 DOI: 10.1098/Rsif.2014.0206  1
2014 Palmisano A, Hoops S, Watson LT, Jones TC, Tyson JJ, Shaffer CA. Multistate Model Builder (MSMB): a flexible editor for compact biochemical models. Bmc Systems Biology. 8: 42. PMID 24708852 DOI: 10.1186/1752-0509-8-42  1
2014 Tyson JA, Anderson SA. GABAergic interneuron transplants to study development and treat disease. Trends in Neurosciences. 37: 169-77. PMID 24508416 DOI: 10.1016/J.Tins.2014.01.003  1
2014 Arnold C, Tyson JE. Outcomes following periviable birth. Seminars in Perinatology. 38: 2-11. PMID 24468563 DOI: 10.1053/j.semperi.2013.07.002  1
2014 Stevenson DK, Wong RJ, Tyson JE. Risks and benefits of comparative effectiveness research in preterm infants: SUPPORT. Journal of Comparative Effectiveness Research. 3: 17-21. PMID 24345253 DOI: 10.2217/cer.13.85  1
2014 Cotten CM, Goldstein RF, McDonald SA, Goldberg RN, Salhab WA, Carlo WA, Tyson JE, Finer NN, Walsh MC, Ehrenkranz RA, Laptook AR, Guillet R, Schibler K, Van Meurs KP, Poindexter BB, et al. Apolipoprotein E genotype and outcome in infants with hypoxic-ischemic encephalopathy. Pediatric Research. 75: 424-30. PMID 24322171 DOI: 10.1038/pr.2013.235  1
2014 Stark AR, Carlo WA, Vohr BR, Papile LA, Saha S, Bauer CR, Oh W, Shankaran S, Tyson JE, Wright LL, Poole WK, Das A, Stoll BJ, Fanaroff AA, Korones SB, et al. Death or neurodevelopmental impairment at 18 to 22 months corrected age in a randomized trial of early dexamethasone to prevent death or chronic lung disease in extremely low birth weight infants. The Journal of Pediatrics. 164: 34-39.e2. PMID 23992673 DOI: 10.1016/j.jpeds.2013.07.027  1
2014 Wittmann ME, Jerde CL, Howeth JG, Maher SP, Deines AM, Jenkins JA, Whitledge GW, Burbank SR, Chadderton WL, Mahon AR, Tyson JT, Gantz CA, Keller RP, Drake JM, Lodge DM. Grass carp in the Great Lakes region: Establishment potential, expert perceptions, and re-evaluation of experimental evidence of ecological impact Canadian Journal of Fisheries and Aquatic Sciences. 71: 992-999. DOI: 10.1139/Cjfas-2013-0537  1
2014 Manning NF, Bossenbroek JM, Mayer CM, Bunnell DB, Tyson JT, Rudstam LG, Jackson JR. Modeling turbidity type and intensity effects on the growth and starvation mortality of age-0 yellow perch Canadian Journal of Fisheries and Aquatic Sciences. 71: 1544-1553. DOI: 10.1139/Cjfas-2013-0528  1
2014 Doherty PE, Antilogus P, Astier P, Chiang J, Gilmore DK, Guyonnet A, Huang D, Kelly H, Kotov I, Kubanek P, Nomerotski A, O'Connor P, Rasmussen A, Riot VJ, Stubbs CW, ... ... Tyson JA, et al. Electro-optical testing of fully depleted CCD image sensors for the Large Synoptic Survey Telescope camera Proceedings of Spie - the International Society For Optical Engineering. 9154. DOI: 10.1117/12.2056733  1
2014 Tyson JA, Sasian J, Gilmore K, Bradshaw A, Claver C, Klint M, Muller G, Poczulp G, Resseguie E. LSST optical beam simulator Proceedings of Spie - the International Society For Optical Engineering. 9154. DOI: 10.1117/12.2055604  1
2014 Chousionis V, Tyson JT. Marstrand's density theorem in the Heisenberg group Bulletin of the London Mathematical Society. 47: 771-788. DOI: 10.1112/Blms/Bdv056  1
2014 Dejarnette N, Hajłasz P, Lukyanenko A, Tyson JT. On the lack of density of lipschitz mappings in sobolev spaces with heisenberg target Conformal Geometry and Dynamics. 18: 119-156. DOI: 10.1090/S1088-4173-2014-00267-7  1
2014 Tyson JA, Sasian J, Claver C, Muller G, Gilmor K, Klint M. LSST beam simulator Journal of Instrumentation. 9. DOI: 10.1088/1748-0221/9/07/C07010  1
2014 Clough R, Harrington CF, Hill SJ, Madrid Y, Tyson JF. Atomic spectrometry updates. Review of advances in elemental speciation Journal of Analytical Atomic Spectrometry. 29: 1158-1196. DOI: 10.1039/C6Ja90030E  1
2014 Wang N, Tyson J. Non-chromatographic speciation of inorganic arsenic by atomic fluorescence spectrometry with flow injection hydride generation with a tetrahydroborate-form anion-exchanger Journal of Analytical Atomic Spectrometry. 29: 665-673. DOI: 10.1039/C3Ja50376C  1
2014 Zainuddin S, Fahim A, Arifin T, Hosur MV, Rahman MM, Tyson JD, Jeelani S. Optimization of mechanical and thermo-mechanical properties of epoxy and E-glass/epoxy composites using NH2-MWCNTs, acetone solvent and combined dispersion methods Composite Structures. 110: 39-50. DOI: 10.1016/j.compstruct.2013.11.010  1
2014 Zainuddin S, Arefin T, Fahim A, Hosur MV, Tyson JD, Kumar A, Trovillion J, Jeelani S. Recovery and improvement in low-velocity impact properties of e-glass/epoxy composites through novel self-healing technique Composite Structures. 108: 277-286. DOI: 10.1016/j.compstruct.2013.09.023  1
2014 Balogh ZM, Mattila P, Tyson JT. Grassmannian Frequency of Sobolev Dimension Distortion Computational Methods and Function Theory. 14: 505-523. DOI: 10.1007/S40315-014-0058-Y  1
2014 Tyson JL, Taylor RK, Curtis CL, Manning MA. A pre-harvest rot of persimmon fruit caused by Phytophthora cactorum in New Zealand Australasian Plant Disease Notes. 9. DOI: 10.1007/s13314-013-0122-x  1
2014 Shabani M, Toporowski J, Tyson J. Financial systems in financial crisis - An analysis of banking systems in the EU: The financial system and economic policy in the UK: Problems of internationalisation Intereconomics. 49: 70-76. DOI: 10.1007/s10272-014-0489-8  1
2014 Chousionis V, Magnani V, Tyson JT. Removable sets for Lipschitz harmonic functions on Carnot groups Calculus of Variations and Partial Differential Equations. 53: 755-780. DOI: 10.1007/S00526-014-0766-1  1
2014 Hajłasz P, Schikorra A, Tyson JT. Homotopy Groups of Spheres and Lipschitz Homotopy Groups of Heisenberg Groups Geometric and Functional Analysis. 24: 245-268. DOI: 10.1007/S00039-014-0261-Z  1
2014 Ti C, Klausmeyer P, Cushman M, Tyson J, Furlong C. High-resolution shape measurements by fringe projection and reflectance transformation imaging Conference Proceedings of the Society For Experimental Mechanics Series. 3: 305-310. DOI: 10.1007/978-3-319-00768-7_39  1
2014 Ti C, Chen X, Tyson J, Harrington E, Dobrev I, Aghazadeh BS, Furlong C. High-speed shape measurements by fringe projection method: SOPRA 3D Conference Proceedings of the Society For Experimental Mechanics Series. 3: 299-304. DOI: 10.1007/978-3-319-00768-7_38  1
2014 Aboagye EO, Aigbirhio FI, Allen P, Arent R, Arrowsmith RL, Banci G, Bagley MC, Bailey CD, Blake T, Bunt AJ, Bushby N, Carroll L, Cons BD, Cortezon F, Dilworth JR, ... ... Tyson JA, et al. Abstracts of the 22nd International Isotope Society (UK Group) Symposium: Synthesis and applications of labelled compounds 2013 Journal of Labelled Compounds and Radiopharmaceuticals. DOI: 10.1002/jlcr.3523  1
2014 Chapman LE, Tyson JN. Analysis and Interpretation of Surveillance Data Concepts and Methods in Infectious Disease Surveillance. 161-176. DOI: 10.1002/9781118928646.ch15  1
2014 Fahim A, Zainuddin S, Ema MK, Tyson J, Hosur MV, Jeelani S. Morphological, thermal and tensile properties of halloysite nanotubes filled poly hydroxy-butyrate-co-hydroxyvalerate (PHBV) nanocom-posites International Sampe Technical Conference 1
2014 Andrew TM, Amos BD, Easterling DR, Oguz C, Baumann WT, Tyson JJ, Watson LT. Global parameter estimation for a eukaryotic cell cycle model in systems biology Simulation Series. 46: 324-331.  1
2014 Tyson JL, Curtis CL, Manning MA, Rees-George J, Snelgar WP, Blattmann P. Systemic movement of Pseudomonas syringae pv. actinidiae in kiwifruit vines in New Zealand New Zealand Plant Protection. 67: 41-47.  1
2013 Parmar JH, Cook KL, Shajahan-Haq AN, Clarke PA, Tavassoly I, Clarke R, Tyson JJ, Baumann WT. Modelling the effect of GRP78 on anti-oestrogen sensitivity and resistance in breast cancer. Interface Focus. 3: 20130012. PMID 24511377 DOI: 10.1098/Rsfs.2013.0012  1
2013 Zhang T, Tyson JJ, Novák B. Role for regulated phosphatase activity in generating mitotic oscillations in Xenopus cell-free extracts. Proceedings of the National Academy of Sciences of the United States of America. 110: 20539-44. PMID 24297885 DOI: 10.1073/Pnas.1318065110  1
2013 Khan FF, Carpenter D, Mitchell L, Mansouri O, Black HA, Tyson J, Armour JA. Accurate measurement of gene copy number for human alpha-defensin DEFA1A3. Bmc Genomics. 14: 719. PMID 24138543 DOI: 10.1186/1471-2164-14-719  1
2013 Subramanian K, Paul MR, Tyson JJ. Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus. Plos Computational Biology. 9: e1003221. PMID 24068904 DOI: 10.1371/Journal.Pcbi.1003221  1
2013 Wootton SH, Evans PW, Tyson JE. Unproven therapies in clinical research and practice: the necessity to change the regulatory paradigm. Pediatrics. 132: 599-601. PMID 24043278 DOI: 10.1542/peds.2013-0778  1
2013 Ball DA, Adames NR, Reischmann N, Barik D, Franck CT, Tyson JJ, Peccoud J. Measurement and modeling of transcriptional noise in the cell cycle regulatory network. Cell Cycle (Georgetown, Tex.). 12: 3203-18. PMID 24013422 DOI: 10.4161/Cc.26257  1
2013 Tyson JA, Anderson SA. The protracted maturation of human ESC-derived interneurons. Cell Cycle (Georgetown, Tex.). 12: 3129-30. PMID 24013418 DOI: 10.4161/Cc.26351  1
2013 Chen C, Baumann WT, Clarke R, Tyson JJ. Modeling the estrogen receptor to growth factor receptor signaling switch in human breast cancer cells. Febs Letters. 587: 3327-34. PMID 23994522 DOI: 10.1016/J.Febslet.2013.08.022  1
2013 Konduri GG, Sokol GM, Van Meurs KP, Singer J, Ambalavanan N, Lee T, Solimano A, Stork E, Fanaroff AA, Gorjanc E, Laptook AR, Madison S, Shankaran S, Bara R, Muran G, ... ... Tyson JE, et al. Impact of early surfactant and inhaled nitric oxide therapies on outcomes in term/late preterm neonates with moderate hypoxic respiratory failure Journal of Perinatology. 33: 944-949. PMID 23867958 DOI: 10.1038/Jp.2013.83  1
2013 Oguz C, Laomettachit T, Chen KC, Watson LT, Baumann WT, Tyson JJ. Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model. Bmc Systems Biology. 7: 53. PMID 23809412 DOI: 10.1186/1752-0509-7-53  1
2013 Parikh NA, Lasky RE, Kennedy KA, McDavid G, Tyson JE. Perinatal factors and regional brain volume abnormalities at term in a cohort of extremely low birth weight infants. Plos One. 8: e62804. PMID 23671636 DOI: 10.1371/journal.pone.0062804  1
2013 Maroof AM, Keros S, Tyson JA, Ying SW, Ganat YM, Merkle FT, Liu B, Goulburn A, Stanley EG, Elefanty AG, Widmer HR, Eggan K, Goldstein PA, Anderson SA, Studer L. Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells. Cell Stem Cell. 12: 559-72. PMID 23642365 DOI: 10.1016/J.Stem.2013.04.008  1
2013 Poirel CL, Rodrigues RR, Chen KC, Tyson JJ, Murali TM. Top-down network analysis to drive bottom-up modeling of physiological processes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 409-18. PMID 23641868 DOI: 10.1089/Cmb.2012.0274  1
2013 Stotts AL, Green C, Northrup TF, Dodrill CL, Evans P, Tyson J, Velasquez M, Hammond SK, Hovell MF. Feasibility and efficacy of an intervention to reduce secondhand smoke exposure among infants discharged from a neonatal intensive care unit. Journal of Perinatology : Official Journal of the California Perinatal Association. 33: 811-6. PMID 23619375 DOI: 10.1038/Jp.2013.43  1
2013 Gérard C, Tyson JJ, Novák B. Minimal models for cell-cycle control based on competitive inhibition and multisite phosphorylations of Cdk substrates. Biophysical Journal. 104: 1367-79. PMID 23528096 DOI: 10.1016/J.Bpj.2013.02.012  1
2013 Verdugo A, Vinod PK, Tyson JJ, Novak B. Molecular mechanisms creating bistable switches at cell cycle transitions. Open Biology. 3: 120179. PMID 23486222 DOI: 10.1098/Rsob.120179  1
2013 Stotts AL, Northrup TF, Schmitz JM, Green C, Tyson J, Velasquez MM, Khan A, Hovell MF. Baby's Breath II protocol development and design: a secondhand smoke exposure prevention program targeting infants discharged from a neonatal intensive care unit. Contemporary Clinical Trials. 35: 97-105. PMID 23466754 DOI: 10.1016/J.Cct.2013.02.012  1
2013 Tyson JY, Pearce MM, Vargas P, Bagchi S, Mulhern BJ, Cianciotto NP. Multiple Legionella pneumophila Type II secretion substrates, including a novel protein, contribute to differential infection of the amoebae Acanthamoeba castellanii, Hartmannella vermiformis, and Naegleria lovaniensis. Infection and Immunity. 81: 1399-410. PMID 23429532 DOI: 10.1128/Iai.00045-13  1
2013 Londhe VA, Nolen TL, Das A, Higgins RD, Tyson JE, Oh W, Devaskar SU. Vitamin A supplementation in extremely low-birth-weight infants: subgroup analysis in small-for-gestational-age infants. American Journal of Perinatology. 30: 771-80. PMID 23329565 DOI: 10.1055/S-0032-1333410  1
2013 Parikh NA, Kennedy KA, Lasky RE, McDavid GE, Tyson JE. Pilot randomized trial of hydrocortisone in ventilator-dependent extremely preterm infants: effects on regional brain volumes. The Journal of Pediatrics. 162: 685-690.e1. PMID 23140612 DOI: 10.1016/j.jpeds.2012.09.054  1
2013 Natarajan G, Shankaran S, McDonald SA, Das A, Ehrenkranz RA, Goldberg RN, Stoll BJ, Tyson JE, Higgins RD, Schendel D, Hougaard DM, Skogstrand K, Thorsen P, Carlo WA. Association between blood spot transforming growth factor-β and patent ductus arteriosus in extremely low-birth weight infants. Pediatric Cardiology. 34: 149-54. PMID 22684193 DOI: 10.1007/s00246-012-0404-7  1
2013 Morris BH, Tyson JE, Stevenson DK, Oh W, Phelps DL, O'Shea TM, McDavid GE, Van Meurs KP, Vohr BR, Grisby C, Yao Q, Kandefer S, Wallace D, Higgins RD. Efficacy of phototherapy devices and outcomes among extremely low birth weight infants: multi-center observational study. Journal of Perinatology : Official Journal of the California Perinatal Association. 33: 126-33. PMID 22499082 DOI: 10.1038/jp.2012.39  1
2013 Balogh ZM, Durand-Cartagena E, Fässler K, Mattila P, Tyson JT. The effect of projections on dimension in the Heisenberg group Revista Matematica Iberoamericana. 29: 381-432. DOI: 10.4171/Rmi/725  1
2013 Tyson J. Turning a Tragedy into a Tribute: A Literature Review of Creating Meaning after Loss of a Loved One Illness Crisis and Loss. 21: 325-340. DOI: 10.2190/IL.21.4.e  1
2013 Pritt JJ, Dufour MR, Mayer CM, Kocovsky PM, Tyson JT, Weimer EJ, Vandergoot CS. Including independent estimates and uncertainty to quantify total abundance of fish migrating in a large river system: Walleye (Sander Vitreus) in the Maumee River, Ohio Canadian Journal of Fisheries and Aquatic Sciences. 70: 803-814. DOI: 10.1139/cjfas-2012-0484  1
2013 Jee MJ, Tyson JA, Schneider MD, Wittman D, Schmidt S, Hilbert S. Cosmic shear results from the deep lens survey. I. Joint constraints on Ωm and σ8 with a two-dimensional analysis Astrophysical Journal. 765. DOI: 10.1088/0004-637X/765/1/74  1
2013 Elçi L, Elçi A, Berg TA, Tyson JF. Dispersive liquid-liquid microextraction and microsample injection system coupled with inductively coupled plasma-mass spectrometry for inorganic arsenic speciation in natural waters International Journal of Environmental Analytical Chemistry. 93: 1065-1073. DOI: 10.1080/03067319.2012.756105  1
2013 Clough R, Harrington CF, Hill SJ, Madrid Y, Tyson JF. Atomic spectrometry update. Elemental speciation review Journal of Analytical Atomic Spectrometry. 28: 1153-1195. DOI: 10.1039/C3Ja90039H  1
2013 Li C, Başaran AE, Tyson JF. Determination of inorganic arsenic in water by a quartz crystal microbalance Analytical Methods. 5: 6286-6291. DOI: 10.1039/C3Ay40876K  1
2013 Drennan-Harris LR, Wongwilawan S, Tyson JF. Trace determination of total mercury in rice by conventional inductively coupled plasma mass spectrometry Journal of Analytical Atomic Spectrometry. 28: 259-265. DOI: 10.1039/C2Ja30278K  1
2013 Balogh ZM, Monti R, Tyson JT. Frequency of Sobolev and quasiconformal dimension distortion Journal Des Mathematiques Pures Et Appliquees. 99: 125-149. DOI: 10.1016/J.Matpur.2012.06.005  1
2013 Manning NF, Mayer CM, Bossenbroek JM, Tyson JT. Effects of water clarity on the length and abundance of age-0 yellow perch in the Western Basin of Lake Erie Journal of Great Lakes Research. 39: 295-302. DOI: 10.1016/j.jglr.2013.03.010  1
2013 Tyson JJ, Novák B. Irreversible Transitions, Bistability and Checkpoint Controls in the Eukaryotic Cell Cycle: A Systems-Level Understanding Handbook of Systems Biology. 265-285. DOI: 10.1016/B978-0-12-385944-0.00014-9  1
2013 Mackay JM, Tyson JT, Wildrick K. Modulus and Poincaré Inequalities on Non-Self-Similar Sierpiński Carpets Geometric and Functional Analysis. 23: 985-1034. DOI: 10.1007/S00039-013-0227-6  1
2013 Littell J, Schmidt T, Tyson J, Oliver S, Melis M, Ruggeri C, Revilock D. Photogrammetry measurements during a tanking test on the Space Shuttle External Tank, ET-137 Conference Proceedings of the Society For Experimental Mechanics Series. 4: 111-123. DOI: 10.1007/978-1-4614-4226-4_14  1
2013 Tyson JR, Snutch TP. Molecular nature of voltage-gated calcium channels: Structure and species comparison Wiley Interdisciplinary Reviews: Membrane Transport and Signaling. 2: 181-206. DOI: 10.1002/wmts.91  1
2013 Tyson JD, Watkinson DA. Historical distribution records and new records confirm and extend the distribution of the silver lamprey, Ichthyomyzon unicuspis, in the Hayes River, Hudson Bay watershed, Manitoba Canadian Field-Naturalist. 127: 262-265.  1
2013 Psilopoulos J, Tyson J. Optical measurement techniques from materials to manufacturing Proceedings of Global Powertrain Congress. 74: 427-434.  1
2012 Tyson J, Armour JA. Determination of haplotypes at structurally complex regions using emulsion haplotype fusion PCR. Bmc Genomics. 13: 693. PMID 23231411 DOI: 10.1186/1471-2164-13-693  1
2012 Kao LS, Millas SG, Pedroza C, Tyson JE, Lally KP. Should perioperative supplemental oxygen be routinely recommended for surgery patients? A Bayesian meta-analysis. Annals of Surgery. 256: 894-901. PMID 23160100 DOI: 10.1097/SLA.0b013e31826cc8da  1
2012 Shankaran S, Barnes PD, Hintz SR, Laptook AR, Zaterka-Baxter KM, McDonald SA, Ehrenkranz RA, Walsh MC, Tyson JE, Donovan EF, Goldberg RN, Bara R, Das A, Finer NN, Sanchez PJ, et al. Brain injury following trial of hypothermia for neonatal hypoxic-ischaemic encephalopathy. Archives of Disease in Childhood. Fetal and Neonatal Edition. 97: F398-404. PMID 23080477 DOI: 10.1136/archdischild-2011-301524  1
2012 Natarajan G, Pappas A, Shankaran S, Laptook AR, Walsh M, McDonald SA, Ehrenkranz RA, Tyson JE, Goldberg RN, Bara R, Higgins RD, Das A, Munoz B. Effect of inborn vs. outborn delivery on neurodevelopmental outcomes in infants with hypoxic-ischemic encephalopathy: secondary analyses of the NICHD whole-body cooling trial. Pediatric Research. 72: 414-9. PMID 22914450 DOI: 10.1038/pr.2012.103  1
2012 Coneyworth LJ, Jackson KA, Tyson J, Bosomworth HJ, van der Hagen E, Hann GM, Ogo OA, Swann DC, Mathers JC, Valentine RA, Ford D. Identification of the human zinc transcriptional regulatory element (ZTRE): a palindromic protein-binding DNA sequence responsible for zinc-induced transcriptional repression. The Journal of Biological Chemistry. 287: 36567-81. PMID 22902622 DOI: 10.1074/jbc.M112.397000  1
2012 Hong T, Xing J, Li L, Tyson JJ. A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells. Bmc Systems Biology. 6: 66. PMID 22697466 DOI: 10.1186/1752-0509-6-66  1
2012 Ambalavanan N, Carlo WA, Tyson JE, Langer JC, Walsh MC, Parikh NA, Das A, Van Meurs KP, Shankaran S, Stoll BJ, Higgins RD. Outcome trajectories in extremely preterm infants. Pediatrics. 130: e115-25. PMID 22689874 DOI: 10.1542/Peds.2011-3693  1
2012 Tyson JE, Pedroza C, Langer J, Green C, Morris B, Stevenson D, Van Meurs KP, Oh W, Phelps D, O'Shea M, McDavid GE, Grisby C, Higgins R. Does aggressive phototherapy increase mortality while decreasing profound impairment among the smallest and sickest newborns? Journal of Perinatology : Official Journal of the California Perinatal Association. 32: 677-84. PMID 22652561 DOI: 10.1038/jp.2012.64  1
2012 Shankaran S, Pappas A, McDonald SA, Vohr BR, Hintz SR, Yolton K, Gustafson KE, Leach TM, Green C, Bara R, Petrie Huitema CM, Ehrenkranz RA, Tyson JE, Das A, Hammond J, et al. Childhood outcomes after hypothermia for neonatal encephalopathy. The New England Journal of Medicine. 366: 2085-92. PMID 22646631 DOI: 10.1056/NEJMoa1112066  1
2012 Fu Y, Glaros T, Zhu M, Wang P, Wu Z, Tyson JJ, Li L, Xing J. Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells. Plos Computational Biology. 8: e1002526. PMID 22615556 DOI: 10.1371/Journal.Pcbi.1002526  1
2012 Tyson JA. Considerations for importing live genetically modified mice from academic laboratories. Lab Animal. 41: 167-70. PMID 22614092 DOI: 10.1038/laban0612-167  1
2012 Sood BG, Shankaran S, Schelonka RL, Saha S, Benjamin DK, Sánchez PJ, Adams-Chapman I, Stoll BJ, Thorsen P, Skogstrand K, Ehrenkranz RA, Hougaard DM, Goldberg RN, Tyson JE, Das A, et al. Cytokine profiles of preterm neonates with fungal and bacterial sepsis. Pediatric Research. 72: 212-20. PMID 22562288 DOI: 10.1038/pr.2012.56  1
2012 Clarke R, Cook KL, Hu R, Facey CO, Tavassoly I, Schwartz JL, Baumann WT, Tyson JJ, Xuan J, Wang Y, Wärri A, Shajahan AN. Endoplasmic reticulum stress, the unfolded protein response, autophagy, and the integrated regulation of breast cancer cell fate. Cancer Research. 72: 1321-31. PMID 22422988 DOI: 10.1158/0008-5472.Can-11-3213  1
2012 Hancioglu B, Tyson JJ. A mathematical model of mitotic exit in budding yeast: the role of Polo kinase. Plos One. 7: e30810. PMID 22383977 DOI: 10.1371/journal.pone.0030810  1
2012 Lasky RE, Church MW, Orlando MS, Morris BH, Parikh NA, Tyson JE, McDavid GE, Oh W, Stevenson DK, Van Meurs KP, Guillet R, Phelps DL. The effects of aggressive vs. conservative phototherapy on the brainstem auditory evoked responses of extremely-low-birth-weight infants. Pediatric Research. 71: 77-84. PMID 22289854 DOI: 10.1038/pr.2011.17  1
2012 Liu Z, Pu Y, Li F, Shaffer CA, Hoops S, Tyson JJ, Cao Y. Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle. The Journal of Chemical Physics. 136: 034105. PMID 22280742 DOI: 10.1063/1.3677190  1
2012 Shankaran S, Laptook AR, Tyson JE, Ehrenkranz RA, Bann CM, Das A, Higgins RD, Bara R, Pappas A, McDonald SA, Goldberg RN, Walsh MC. Evolution of encephalopathy during whole body hypothermia for neonatal hypoxic-ischemic encephalopathy. The Journal of Pediatrics. 160: 567-572.e3. PMID 22050871 DOI: 10.1016/j.jpeds.2011.09.018  1
2012 Sant'Anna G, Laptook AR, Shankaran S, Bara R, McDonald SA, Higgins RD, Tyson JE, Ehrenkranz RA, Das A, Goldberg RN, Walsh MC. Phenobarbital and temperature profile during hypothermia for hypoxic-ischemic encephalopathy. Journal of Child Neurology. 27: 451-7. PMID 21960671 DOI: 10.1177/0883073811419317  1
2012 Shankaran S, Laptook AR, McDonald SA, Higgins RD, Tyson JE, Ehrenkranz RA, Das A, Sant'Anna G, Goldberg RN, Bara R, Walsh MC. Temperature profile and outcomes of neonates undergoing whole body hypothermia for neonatal hypoxic-ischemic encephalopathy. Pediatric Critical Care Medicine : a Journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies. 13: 53-9. PMID 21499182 DOI: 10.1097/PCC.0b013e31821926bc  1
2012 Tyson J. Microfinance Handbook of Critical Issues in Finance. 225-236. DOI: 10.4337/9781849803700.00037  1
2012 Tyson J, Psilopoulos J, Schwartz E, Galanulis K. Optical metrology, the key to lean manufacturing Sae Technical Papers. DOI: 10.4271/2012-01-0185  1
2012 Tyson JA, Schimleck LR, Aguiar AM, Muro Abad JI, Rezende GDSP, Filho OM. Development of near infrared calibrations for physical and mechanical properties of eucalypt pulps of mill-line origin Journal of Near Infrared Spectroscopy. 20: 287-294. DOI: 10.1255/jnirs.988  1
2012 Garofalo N, Tyson JT. Riesz potentials and p-superharmonic functions in Lie groups of Heisenberg type Bulletin of the London Mathematical Society. 44: 353-366. DOI: 10.1112/Blms/Bdr102  1
2012 Dawson WA, Wittman D, Jee MJ, Gee P, Hughes JP, Tyson JA, Schmidt S, Thorman P, Bradač M, Miyazaki S, Lemaux B, Utsumi Y, Margoniner VE. Discovery of a dissociative galaxy cluster merger with large physical separation Astrophysical Journal Letters. 747. DOI: 10.1088/2041-8205/747/2/L42  1
2012 Choi A, Tyson JA, Morrison CB, Jee MJ, Schmidt SJ, Margoniner VE, Wittman DM. Galaxy-mass correlations on 10 Mpc scales in the deep lens survey Astrophysical Journal. 759. DOI: 10.1088/0004-637X/759/2/101  1
2012 Kearns J, Tyson J. Improving the accuracy and precision of an arsenic field test kit: Increased reaction time and digital image analysis Analytical Methods. 4: 1693-1698. DOI: 10.1039/C2Ay05655K  1
2012 Balogh ZM, Fässler K, Mattila P, Tyson JT. Projection and slicing theorems in Heisenberg groups Advances in Mathematics. 231: 569-604. DOI: 10.1016/J.Aim.2012.03.037  1
2012 Tyson JB. Diversity in Philanthropy: A New Paradigm Building Strong Nonprofits: New Strategies For Growth and Sustainability. 115-132. DOI: 10.1002/9781118386811.ch7  1
2012 Tyson JL, Rees-George J, Curtis CL, Manning MA, Fullerton RA. Survival of Pseudomonas syringae pv. actinidiae on the orchard floor over winter New Zealand Plant Protection. 65: 25-28.  1
2012 Tyson JB. Acts and the apostles: Issues of leadership in the second century Engaging Early Christian History: Reading Acts in the Second Century. 45-58.  1
2011 Clarke R, Shajahan AN, Wang Y, Tyson JJ, Riggins RB, Weiner LM, Bauman WT, Xuan J, Zhang B, Facey C, Aiyer H, Cook K, Hickman FE, Tavassoly I, Verdugo A, et al. Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer. Hormone Molecular Biology and Clinical Investigation. 5: 35-44. PMID 23930139 DOI: 10.1515/Hmbci.2010.073  1
2011 Chahil N, Bloom P, Tyson J, Jazwari S, Robilotti J, Gaultieri N. Novel approach to treatment of rectal mucosa-associated lymphoid tissue lymphoma. Bmj Case Reports. 2011: 2969. PMID 22715275 DOI: 10.1136/bcr.05.2010.2969  1
2011 Ball DA, Marchand J, Poulet M, Baumann WT, Chen KC, Tyson JJ, Peccoud J. Oscillatory dynamics of cell cycle proteins in single yeast cells analyzed by imaging cytometry. Plos One. 6: e26272. PMID 22046265 DOI: 10.1371/Journal.Pone.0026272  1
2011 Petros TJ, Tyson JA, Anderson SA. Pluripotent stem cells for the study of CNS development. Frontiers in Molecular Neuroscience. 4: 30. PMID 22016722 DOI: 10.3389/Fnmol.2011.00030  1
2011 Suzuki J, Tyson JW. Misconceptions about the safety of ingesting methanol-based solid fuels: a case report. The Primary Care Companion For Cns Disorders. 13. PMID 21977352 DOI: 10.4088/PCC.10l01085  0.04
2011 Hong T, Xing J, Li L, Tyson JJ. A mathematical model for the reciprocal differentiation of T helper 17 cells and induced regulatory T cells. Plos Computational Biology. 7: e1002122. PMID 21829337 DOI: 10.1371/Journal.Pcbi.1002122  1
2011 Carlo WA, McDonald SA, Tyson JE, Stoll BJ, Ehrenkranz RA, Shankaran S, Goldberg RN, Das A, Schendel D, Thorsen P, Skogstrand K, Hougaard DM, Oh W, Laptook AR, Duara S, et al. Cytokines and neurodevelopmental outcomes in extremely low birth weight infants. The Journal of Pediatrics. 159: 919-25.e3. PMID 21798559 DOI: 10.1016/J.Jpeds.2011.05.042  1
2011 Schmidt B, Seshia M, Shankaran S, Mildenhall L, Tyson J, Lui K, Fok T, Roberts R. Effects of prophylactic indomethacin in extremely low-birth-weight infants with and without adequate exposure to antenatal corticosteroids. Archives of Pediatrics & Adolescent Medicine. 165: 642-6. PMID 21727276 DOI: 10.1001/archpediatrics.2011.95  1
2011 Tyson JJ, Baumann WT, Chen C, Verdugo A, Tavassoly I, Wang Y, Weiner LM, Clarke R. Dynamic modelling of oestrogen signalling and cell fate in breast cancer cells. Nature Reviews. Cancer. 11: 523-32. PMID 21677677 DOI: 10.1038/Nrc3081  1
2011 Stotts AL, Evans PW, Green CE, Northrup TF, Dodrill CL, Fox JM, Tyson JE, Hovell MF. Secondhand smoke risk in infants discharged from an NICU: potential for significant health disparities? Nicotine & Tobacco Research : Official Journal of the Society For Research On Nicotine and Tobacco. 13: 1015-22. PMID 21669959 DOI: 10.1093/Ntr/Ntr116  1
2011 Shankaran S, Pappas A, McDonald SA, Laptook AR, Bara R, Ehrenkranz RA, Tyson JE, Goldberg R, Donovan EF, Fanaroff AA, Das A, Poole WK, Walsh M, Higgins RD, Welsh C, et al. Predictive value of an early amplitude integrated electroencephalogram and neurologic examination. Pediatrics. 128: e112-20. PMID 21669899 DOI: 10.1542/peds.2010-2036  1
2011 He E, Kapuy O, Oliveira RA, Uhlmann F, Tyson JJ, Novák B. System-level feedbacks make the anaphase switch irreversible. Proceedings of the National Academy of Sciences of the United States of America. 108: 10016-21. PMID 21617094 DOI: 10.1073/Pnas.1102106108  1
2011 Gupta S, Ramin SM, Tyson JE, Lucas M, Vidaeff AC. Factors related to corticosteroid utilization in preterm birth. American Journal of Perinatology. 28: 413-8. PMID 21380989 DOI: 10.1055/s-0031-1274505  1
2011 Tyson JJ, Novak B. Cell cycle: who turns the crank? Current Biology : Cb. 21: R185-7. PMID 21377093 DOI: 10.1016/J.Cub.2011.01.042  1
2011 Ball DA, Ahn TH, Wang P, Chen KC, Cao Y, Tyson JJ, Peccoud J, Baumann WT. Stochastic exit from mitosis in budding yeast: model predictions and experimental observations. Cell Cycle (Georgetown, Tex.). 10: 999-1009. PMID 21350333 DOI: 10.4161/Cc.10.6.14966  1
2011 Singhania R, Sramkoski RM, Jacobberger JW, Tyson JJ. A hybrid model of mammalian cell cycle regulation. Plos Computational Biology. 7: e1001077. PMID 21347318 DOI: 10.1371/Journal.Pcbi.1001077  1
2011 Campbell LL, Tyson JA, Stackpole EE, Hokenson KE, Sherrill H, McKeon JE, Kim SA, Edmands SD, Suarez C, Hall AC. Assessment of general anaesthetic cytotoxicity in murine cortical neurones in dissociated culture. Toxicology. 283: 1-7. PMID 21277931 DOI: 10.1016/j.tox.2011.01.014  1
2011 Hintz SR, Stevenson DK, Yao Q, Wong RJ, Das A, Van Meurs KP, Morris BH, Tyson JE, Oh W, Poole WK, Phelps DL, McDavid GE, Grisby C, Higgins RD. Is phototherapy exposure associated with better or worse outcomes in 501- to 1000-g-birth-weight infants? Acta Paediatrica (Oslo, Norway : 1992). 100: 960-5. PMID 21272067 DOI: 10.1111/j.1651-2227.2011.02175.x  1
2011 Pappas A, Shankaran S, Laptook AR, Langer JC, Bara R, Ehrenkranz RA, Goldberg RN, Das A, Higgins RD, Tyson JE, Walsh MC. Hypocarbia and adverse outcome in neonatal hypoxic-ischemic encephalopathy. The Journal of Pediatrics. 158: 752-758.e1. PMID 21146184 DOI: 10.1016/j.jpeds.2010.10.019  1
2011 Kwon JM, Guillet R, Shankaran S, Laptook AR, McDonald SA, Ehrenkranz RA, Tyson JE, O'Shea TM, Goldberg RN, Donovan EF, Fanaroff AA, Poole WK, Higgins RD, Walsh MC. Clinical seizures in neonatal hypoxic-ischemic encephalopathy have no independent impact on neurodevelopmental outcome: secondary analyses of data from the neonatal research network hypothermia trial. Journal of Child Neurology. 26: 322-8. PMID 20921569 DOI: 10.1177/0883073810380915  1
2011 Durand-Cartagena E, Tyson JT. Rectifiable curves in Sierpiński carpets Indiana University Mathematics Journal. 60: 285-309. DOI: 10.1512/Iumj.2011.60.4382  1
2010 Tyson J, Majerus TM, Walker S, Armour JA. Screening for common copy-number variants in cancer genes. Cancer Genetics and Cytogenetics. 203: 316-23. PMID 21156252 DOI: 10.1016/j.cancergencyto.2010.08.008  0.01
2010 Barik D, Baumann WT, Paul MR, Novak B, Tyson JJ. A model of yeast cell-cycle regulation based on multisite phosphorylation. Molecular Systems Biology. 6: 405. PMID 20739927 DOI: 10.1038/Msb.2010.55  1
2010 Stout LM, Dodova EN, Tyson JF, Nüsslein K. Phytoprotective influence of bacteria on growth and cadmium accumulation in the aquatic plant Lemna minor. Water Research. 44: 4970-9. PMID 20732704 DOI: 10.1016/J.Watres.2010.07.073  1
2010 Lee HC, Green C, Hintz SR, Tyson JE, Parikh NA, Langer J, Gould JB. Prediction of death for extremely premature infants in a population-based cohort. Pediatrics. 126: e644-50. PMID 20713479 DOI: 10.1542/peds.2010-0097  1
2010 David LS, Garcia E, Cain SM, Thau E, Tyson JR, Snutch TP. Splice-variant changes of the Ca(V)3.2 T-type calcium channel mediate voltage-dependent facilitation and associate with cardiac hypertrophy and development. Channels (Austin, Tex.). 4: 375-89. PMID 20699644 DOI: 10.4161/Chan.4.5.12874  1
2010 Novak B, Kapuy O, Domingo-Sananes MR, Tyson JJ. Regulated protein kinases and phosphatases in cell cycle decisions. Current Opinion in Cell Biology. 22: 801-8. PMID 20678910 DOI: 10.1016/J.Ceb.2010.07.001  1
2010 Randhawa R, Shaffer CA, Tyson JJ. Model composition for macromolecular regulatory networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 278-87. PMID 20431147 DOI: 10.1109/Tcbb.2008.64  1
2010 Caple F, Williams EA, Spiers A, Tyson J, Burtle B, Daly AK, Mathers JC, Hesketh JE. Inter-individual variation in DNA damage and base excision repair in young, healthy non-smokers: effects of dietary supplementation and genotype. The British Journal of Nutrition. 103: 1585-93. PMID 20082738 DOI: 10.1017/S0007114509993540  1
2010 Tyson JJ, Novák B. Functional motifs in biochemical reaction networks. Annual Review of Physical Chemistry. 61: 219-40. PMID 20055671 DOI: 10.1146/Annurev.Physchem.012809.103457  1
2010 Wolkenhauer O, Auffray C, Baltrusch S, Blüthgen N, Byrne H, Cascante M, Ciliberto A, Dale T, Drasdo D, Fell D, Ferrell JE, Gallahan D, Gatenby R, Günther U, Harms BD, ... ... Tyson J, et al. Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research. 70: 12-3. PMID 20028868 DOI: 10.1158/0008-5472.Can-09-2676  1
2009 Randhawa R, Shaffer CA, Tyson JJ. Model aggregation: a building-block approach to creating large macromolecular regulatory networks. Bioinformatics (Oxford, England). 25: 3289-95. PMID 19880372 DOI: 10.1093/Bioinformatics/Btp581  1
2009 Tyson JJ. In their own words: Interviews with Cell Cycle. John J. Tyson on his highly cited paper. Cell Cycle (Georgetown, Tex.). 8: 3261. PMID 19823016  1
2009 Su J, Zhang T, Tyson J, Li L. The interleukin-1 receptor-associated kinase M selectively inhibits the alternative, instead of the classical NFkappaB pathway. Journal of Innate Immunity. 1: 164-74. PMID 19809574 DOI: 10.1159/000158541  1
2009 Kapuy O, He E, López-Avilés S, Uhlmann F, Tyson JJ, Novák B. System-level feedbacks control cell cycle progression. Febs Letters. 583: 3992-8. PMID 19703449 DOI: 10.1016/J.Febslet.2009.08.023  1
2009 Li S, Brazhnik P, Sobral B, Tyson JJ. Temporal controls of the asymmetric cell division cycle in Caulobacter crescentus. Plos Computational Biology. 5: e1000463. PMID 19680425 DOI: 10.1371/Journal.Pcbi.1000463  1
2009 Zhang T, Brazhnik P, Tyson JJ. Computational analysis of dynamical responses to the intrinsic pathway of programmed cell death. Biophysical Journal. 97: 415-34. PMID 19619456 DOI: 10.1016/J.Bpj.2009.04.053  1
2009 Kapuy O, Barik D, Sananes MR, Tyson JJ, Novák B. Bistability by multiple phosphorylation of regulatory proteins. Progress in Biophysics and Molecular Biology. 100: 47-56. PMID 19523976 DOI: 10.1016/J.Pbiomolbio.2009.06.004  1
2009 Zwolak J, Adjerid N, Bagci EZ, Tyson JJ, Sible JC. A quantitative model of the effect of unreplicated DNA on cell cycle progression in frog egg extracts. Journal of Theoretical Biology. 260: 110-20. PMID 19490919 DOI: 10.1016/J.Jtbi.2009.05.018  1
2009 Shaffer CA, Zwolak JW, Randhawa R, Tyson JJ. Modeling molecular regulatory networks with JigCell and PET. Methods in Molecular Biology (Clifton, N.J.). 500: 81-111. PMID 19399431 DOI: 10.1007/978-1-59745-525-1_4  1
2009 Kar S, Baumann WT, Paul MR, Tyson JJ. Exploring the roles of noise in the eukaryotic cell cycle. Proceedings of the National Academy of Sciences of the United States of America. 106: 6471-6. PMID 19246388 DOI: 10.1073/Pnas.0810034106  1
2009 Csikász-Nagy A, Kapuy O, Tóth A, Pál C, Jensen LJ, Uhlmann F, Tyson JJ, Novák B. Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation. Molecular Systems Biology. 5: 236. PMID 19156128 DOI: 10.1038/Msb.2008.73  1
2009 Powell KL, Cain SM, Ng C, Sirdesai S, David LS, Kyi M, Garcia E, Tyson JR, Reid CA, Bahlo M, Foote SJ, Snutch TP, O'Brien TJ. A Cav3.2 T-type calcium channel point mutation has splice-variant-specific effects on function and segregates with seizure expression in a polygenic rat model of absence epilepsy. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 371-80. PMID 19144837 DOI: 10.1523/Jneurosci.5295-08.2009  1
2009 Tyson J, Caple F, Spiers A, Burtle B, Daly AK, Williams EA, Hesketh JE, Mathers JC. Inter-individual variation in nucleotide excision repair in young adults: effects of age, adiposity, micronutrient supplementation and genotype. The British Journal of Nutrition. 101: 1316-23. PMID 18838045 DOI: 10.1017/S0007114508076265  1
2009 Ramakrishnan N, Bhalla US, Tyson JJ. Computing with proteins Computer. 42: 47-56. DOI: 10.1109/Mc.2009.12  1
2008 Novák B, Tyson JJ. Design principles of biochemical oscillators. Nature Reviews. Molecular Cell Biology. 9: 981-91. PMID 18971947 DOI: 10.1038/Nrm2530  1
2008 Tyson JJ, Novak B. Temporal organization of the cell cycle. Current Biology : Cb. 18: R759-R768. PMID 18786381 DOI: 10.1016/J.Cub.2008.07.001  1
2008 Csikász-Nagy A, Novák B, Tyson JJ. Reverse engineering models of cell cycle regulation. Advances in Experimental Medicine and Biology. 641: 88-97. PMID 18783174 DOI: 10.1007/978-0-387-09794-7_7  1
2008 Barik D, Paul MR, Baumann WT, Cao Y, Tyson JJ. Stochastic simulation of enzyme-catalyzed reactions with disparate timescales. Biophysical Journal. 95: 3563-74. PMID 18621809 DOI: 10.1529/Biophysj.108.129155  1
2008 Tyson JJ, Albert R, Goldbeter A, Ruoff P, Sible J. Biological switches and clocks. Journal of the Royal Society, Interface / the Royal Society. 5: S1-8. PMID 18522926 DOI: 10.1098/Rsif.2008.0179.Focus  1
2008 Li S, Brazhnik P, Sobral B, Tyson JJ. A quantitative study of the division cycle of Caulobacter crescentus stalked cells. Plos Computational Biology. 4: e9. PMID 18225942 DOI: 10.1371/Journal.Pcbi.0040009  1
2008 Csikász-Nagy A, Gyorffy B, Alt W, Tyson JJ, Novák B. Spatial controls for growth zone formation during the fission yeast cell cycle. Yeast (Chichester, England). 25: 59-69. PMID 17957823 DOI: 10.1002/Yea.1571  1
2008 Sabouri-Ghomi M, Ciliberto A, Kar S, Novak B, Tyson JJ. Antagonism and bistability in protein interaction networks. Journal of Theoretical Biology. 250: 209-18. PMID 17950756 DOI: 10.1016/J.Jtbi.2007.09.001  1
2008 Panning TD, Watson LT, Allen NA, Chen KC, Shaffer CA, Tyson JJ. Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle Journal of Global Optimization. 40: 719-738. DOI: 10.1007/S10898-007-9273-7  1
2007 Calzone L, Thieffry D, Tyson JJ, Novak B. Dynamical modeling of syncytial mitotic cycles in Drosophila embryos. Molecular Systems Biology. 3: 131. PMID 17667953 DOI: 10.1038/Msb4100171  1
2007 Novak B, Tyson JJ, Gyorffy B, Csikasz-Nagy A. Irreversible cell-cycle transitions are due to systems-level feedback. Nature Cell Biology. 9: 724-8. PMID 17603504 DOI: 10.1038/Ncb0707-724  1
2007 Ciliberto A, Capuani F, Tyson JJ. Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation. Plos Computational Biology. 3: e45. PMID 17367203 DOI: 10.1371/journal.pcbi.0030045  1
2007 Csikász-Nagy A, Kapuy O, Gyorffy B, Tyson JJ, Novák B. Modeling the septation initiation network (SIN) in fission yeast cells. Current Genetics. 51: 245-55. PMID 17340144 DOI: 10.1007/S00294-007-0123-4  1
2007 Tyson JJ. Bringing cartoons to life. Nature. 445: 823. PMID 17314960 DOI: 10.1038/445823a  1
2007 Zhang T, Brazhnik P, Tyson JJ. Exploring mechanisms of the DNA-damage response: p53 pulses and their possible relevance to apoptosis. Cell Cycle (Georgetown, Tex.). 6: 85-94. PMID 17245126 DOI: 10.4161/Cc.6.1.3705  1
2007 Hong CI, Conrad ED, Tyson JJ. A proposal for robust temperature compensation of circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 104: 1195-200. PMID 17229851 DOI: 10.1073/Pnas.0601378104  1
2007 Sible JC, Tyson JJ. Mathematical modeling as a tool for investigating cell cycle control networks. Methods (San Diego, Calif.). 41: 238-47. PMID 17189866 DOI: 10.1016/J.Ymeth.2006.08.003  1
2007 Panning TD, Watson LT, Shaffer CA, Tyson JJ. A mathematical programming formulation for the budding yeast cell cycle Simulation. 83: 497-514. DOI: 10.1177/0037549707085075  1
2007 Brazhnik P, Li S, Sobral B, Tyson JJ. Computational model of the division cycle of Caulobacter crescentus Aip Conference Proceedings. 952: 219-228. DOI: 10.1063/1.2816625  1
2006 Vass MT, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. The JigCell model builder: a spreadsheet interface for creating biochemical reaction network models. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 3: 155-64. PMID 17048401 DOI: 10.1109/Tcbb.2006.27  1
2006 Allen NA, Chen KC, Shaffer CA, Tyson JJ, Watson LT. Computer evaluation of network dynamics models with application to cell cycle control in budding yeast Iee Proceedings Systems Biology. 153: 13-21. PMID 16983831 DOI: 10.1049/ip-syb:20050029  1
2006 Tyson JJ. Another turn for p53. Molecular Systems Biology. 2: 2006.0032. PMID 16773082 DOI: 10.1038/msb4100060  1
2006 Battogtokh D, Aihara K, Tyson JJ. Synchronization of eukaryotic cells by periodic forcing. Physical Review Letters. 96: 148102. PMID 16712125 DOI: 10.1103/PhysRevLett.96.148102  1
2006 Csikász-Nagy A, Battogtokh D, Chen KC, Novák B, Tyson JJ. Analysis of a generic model of eukaryotic cell-cycle regulation. Biophysical Journal. 90: 4361-79. PMID 16581849 DOI: 10.1529/Biophysj.106.081240  1
2006 Brazhnik P, Tyson JJ. Cell cycle control in bacteria and yeast: a case of convergent evolution? Cell Cycle (Georgetown, Tex.). 5: 522-9. PMID 16552176  1
2006 Battogtokh D, Tyson JJ. Periodic forcing of a mathematical model of the eukaryotic cell cycle. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 73: 011910. PMID 16486188 DOI: 10.1103/PhysRevE.73.011910  1
2006 Sauro HM, Harel D, Kwiatkowska M, Shaffer CA, Uhrmacher AM, Hucka M, Mendes P, Strömback L, Tyson JJ. Challenges for modeling and simulation methods in systems biology Proceedings - Winter Simulation Conference. 1720-1730. DOI: 10.1109/WSC.2006.322948  1
2006 Shaffer CA, Randhawa R, Tyson JJ. The role of composition and aggregation in modeling macromolecular regulatory networks Proceedings - Winter Simulation Conference. 1628-1635. DOI: 10.1109/WSC.2006.322937  1
2005 Zwolak JW, Tyson JJ, Watson LT. Globally optimised parameters for a model of mitotic control in frog egg extracts. Systems Biology. 152: 81-92. PMID 17044236 DOI: 10.1049/ip-syb:20045032  1
2005 Ciliberto A, Lukács A, Tóth A, Tyson JJ, Novák B. Rewiring the exit from mitosis. Cell Cycle (Georgetown, Tex.). 4: 1107-12. PMID 15970669  1
2005 Zwolak JW, Tyson JJ, Watson LT. Parameter estimation for a mathematical model of the cell cycle in frog eggs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 48-63. PMID 15725733 DOI: 10.1089/Cmb.2005.12.48  1
2005 Ciliberto A, Novak B, Tyson JJ. Steady states and oscillations in the p53/Mdm2 network. Cell Cycle (Georgetown, Tex.). 4: 488-93. PMID 15725723 DOI: 10.4161/Cc.4.3.1548  1
2004 Battogtokh D, Tyson JJ. Turbulence near cyclic fold bifurcations in birhythmic media. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 026212. PMID 15447570 DOI: 10.1103/PhysRevE.70.026212  1
2004 Battogtokh D, Tyson JJ. Bifurcation analysis of a model of the budding yeast cell cycle. Chaos (Woodbury, N.Y.). 14: 653-61. PMID 15446975 DOI: 10.1063/1.1780011  1
2004 Novák B, Tyson JJ. A model for restriction point control of the mammalian cell cycle. Journal of Theoretical Biology. 230: 563-79. PMID 15363676 DOI: 10.1016/J.Jtbi.2004.04.039  1
2004 Tyson JJ, Glass L. Arthur T. Winfree (1942-2002). Journal of Theoretical Biology. 230: 433-9. PMID 15363665 DOI: 10.1016/J.Jtbi.2004.04.042  1
2004 Vass M, Allen N, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. the JigCell model builder and run manager. Bioinformatics (Oxford, England). 20: 3680-1. PMID 15273159 DOI: 10.1093/Bioinformatics/Bth422  1
2004 Freeman KW, Nolen G, Tyson J, Lewis KD, Greifeld R, Gulati R. How CEOs manage growth agendas. Harvard Business Review. 82: 124-32, 189. PMID 15241959  1
2004 Chen KC, Calzone L, Csikasz-Nagy A, Cross FR, Novak B, Tyson JJ. Integrative analysis of cell cycle control in budding yeast. Molecular Biology of the Cell. 15: 3841-62. PMID 15169868 DOI: 10.1091/Mbc.E03-11-0794  1
2004 Sveiczer A, Tyson JJ, Novak B. Modelling the fission yeast cell cycle. Briefings in Functional Genomics & Proteomics. 2: 298-307. PMID 15163365 DOI: 10.1093/Bfgp/2.4.298  1
2004 Tyson JJ. A precarious balance. Current Biology : Cb. 14: R262-3. PMID 15062115 DOI: 10.1016/j.cub.2004.03.017  1
2004 Thornton BR, Chen KC, Cross FR, Tyson JJ, Toczyski DP. Cycling without the cyclosome: modeling a yeast strain lacking the APC. Cell Cycle (Georgetown, Tex.). 3: 629-33. PMID 15034296  1
2004 Tyson JJ. Monitoring p53's pulse. Nature Genetics. 36: 113-4. PMID 14752517 DOI: 10.1038/ng0204-113  1
2004 Steel GJ, Fullerton DM, Tyson JR, Stirling CJ. Coordinated activation of Hsp70 chaperones. Science (New York, N.Y.). 303: 98-101. PMID 14704430 DOI: 10.1126/science.1092287  1
2004 Zwolak JW, Tyson JJ, Watson LT. Finding all steady state solutions of chemical kinetic models Nonlinear Analysis: Real World Applications. 5: 801-814. DOI: 10.1016/J.Nonrwa.2004.02.002  1
2004 He J, Sosonkina M, Shaffer CA, Tyson JJ, Watson LT, Zwolak JW. A hierarchical parallel scheme for global parameter estimation in systems biology Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 571-579.  1
2003 Ciliberto A, Novak B, Tyson JJ. Mathematical model of the morphogenesis checkpoint in budding yeast. The Journal of Cell Biology. 163: 1243-54. PMID 14691135 DOI: 10.1083/Jcb.200306139  1
2003 Novák B, Tyson JJ. Modelling the controls of the eukaryotic cell cycle Biochemical Society Transactions. 31: 1526-1529. PMID 14641104 DOI: 10.1042/Bst0311526  1
2003 Allen NA, Calzone L, Chen KC, Ciliberto A, Ramakrishnan N, Shaffer CA, Sible JC, Tyson JJ, Vass MT, Watson LT, Zwolak JW. Modeling regulatory networks at Virginia Tech. Omics : a Journal of Integrative Biology. 7: 285-99. PMID 14583117 DOI: 10.1089/153623103322452404  1
2003 Ciliberto A, Petrus MJ, Tyson JJ, Sible JC. A kinetic model of the cyclin E/Cdk2 developmental timer in Xenopus laevis embryos. Biophysical Chemistry. 104: 573-89. PMID 12914904 DOI: 10.1016/S0301-4622(03)00060-7  1
2003 Tyson JJ, Chen KC, Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Current Opinion in Cell Biology. 15: 221-31. PMID 12648679 DOI: 10.1016/S0955-0674(03)00017-6  1
2003 Sha W, Moore J, Chen K, Lassaletta AD, Yi CS, Tyson JJ, Sible JC. Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts. Proceedings of the National Academy of Sciences of the United States of America. 100: 975-80. PMID 12509509 DOI: 10.1073/Pnas.0235349100  1
2002 Tyson JJ, Csikasz-Nagy A, Novak B. The dynamics of cell cycle regulation. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 24: 1095-109. PMID 12447975 DOI: 10.1002/Bies.10191  1
2001 Novak B, Pataki Z, Ciliberto A, Tyson JJ. Mathematical model of the cell division cycle of fission yeast. Chaos (Woodbury, N.Y.). 11: 277-286. PMID 12779461 DOI: 10.1063/1.1345725  1
2001 Tyson JJ, Mackey MC. Molecular, metabolic, and genetic control: An introduction. Chaos (Woodbury, N.Y.). 11: 81-83. PMID 12779443 DOI: 10.1063/1.1350441  1
1979 Tyson J, Garcia-Herdugo G, Sachsenmaier W. Control of nuclear division in Physarum polycephalum: Comparison of cycloheximide pulse treatment, UV irradiation, and heat shock Experimental Cell Research. 119: 87-98. PMID 761604 DOI: 10.1016/0014-4827(79)90338-0  1
1979 Tyson J, Sachsenmaier W. Derepression as a model for control of the DNA-division cycle in eukaryotes. Journal of Theoretical Biology. 79: 275-280. PMID 522494 DOI: 10.1016/0022-5193(79)90346-1  1
1978 Tyson J, Sachsenmaier W. Is nuclear division in Physarum controlled by a continuous limit cycle oscillator Journal of Theoretical Biology. 73: 723-738. PMID 703344 DOI: 10.1016/0022-5193(78)90133-9  1
1977 Hastings S, Tyson J, Webster D. Existence of periodic solutions for negative feedback cellular control systems Journal of Differential Equations. 25: 39-64. DOI: 10.1016/0022-0396(77)90179-6  0.01
1975 Tyson J, Kauffman S. Control of mitosis by a continuous biochemical oscillation: Synchronization; spatially inhomogeneous oscillations Journal of Mathematical Biology. 1: 289-310. DOI: 10.1007/Bf00279848  0.08
1971 Tyson J, Claassen HH, Kim H. Molecular Potential Functions Expressed in Cartesian Coordinates: Application to the Orbital Valency Force Field Journal of Chemical Physics. 54: 3142-3156. DOI: 10.1063/1.1675302  1
1970 Selig H, Holloway JH, Tyson J, Claassen HH. Raman Spectra of AsF5 and VF5 and Force Constants for PF5, AsF5, and VF5 Journal of Chemical Physics. 53: 2559-2564. DOI: 10.1063/1.1674369  1
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