Sam Griffiths-Jones, PhD - Publications

Faculty of Life Sciences University of Manchester, Manchester, England, United Kingdom 

94 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Gallicchio L, Griffiths-Jones S, Ronshaugen M. Corrigendum to: Single-cell visualization of mir-9a and Senseless co-expression during Drosophila melanogaster embryonic and larval peripheral nervous system development. G3 (Bethesda, Md.). 11. PMID 33824976 DOI: 10.1093/g3journal/jkab048  0.56
2021 Gallicchio L, Griffiths-Jones S, Ronshaugen M. Single-cell visualization of mir-9a and Senseless co-expression during Drosophila melanogaster embryonic and larval peripheral nervous system development. G3 (Bethesda, Md.). 11. PMID 33561238 DOI: 10.1093/g3journal/jkaa010  0.56
2020 Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Research. PMID 33211869 DOI: 10.1093/nar/gkaa1047  1
2020 Griffiths R, Woods S, Cheng A, Wang P, Griffiths-Jones S, Ronshaugen M, Kimber SJ. The Transcription Factor-microRNA Regulatory Network during hESC-chondrogenesis. Scientific Reports. 10: 4744. PMID 32179818 DOI: 10.1038/S41598-020-61734-4  0.56
2020 Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, ... ... Griffiths-Jones S, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6  0.72
2019 Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay SJE, Cochrane G, ... ... Griffiths-Jones S, et al. Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] Nucleic Acids Research. 47. PMID 30535383 DOI: 10.1093/Nar/Gky1206  1
2019 Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, ... ... Griffiths-Jones S, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034  1
2018 Kozomara A, Birgaoanu M, Griffiths-Jones S. miRBase: from microRNA sequences to function. Nucleic Acids Research. PMID 30423142 DOI: 10.1093/Nar/Gky1141  0.56
2017 Ninova M, Griffiths-Jones S, Ronshaugen M. Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis. Genome Biology. 18: 184. PMID 28950880 DOI: 10.1186/S13059-017-1304-1  0.72
2017 Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, ... ... Griffiths-Jones S, et al. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. Bmc Biology. 15: 62. PMID 28756775 DOI: 10.1186/S12915-017-0399-X  0.56
2017 Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008  1
2016 Jenkinson EM, Rodero MP, Kasher PR, Uggenti C, Oojageer A, Goosey LC, Rose Y, Kershaw CJ, Urquhart JE, Williams SG, Bhaskar SS, O'Sullivan J, Baerlocher GM, Haubitz M, Aubert G, ... ... Griffiths-Jones S, et al. Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts. Nature Genetics. PMID 27571260 DOI: 10.1038/Ng.3661  1
2016 Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP. Pervasive microRNA duplication in chelicerates: insights from the embryonic microRNA repertoire of the spider Parasteatoda tepidariorum. Genome Biology and Evolution. PMID 27324919 DOI: 10.1093/Gbe/Evw143  0.72
2016 Hooks KB, Naseeb S, Parker S, Griffiths-Jones S, Delneri D. Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae. Genetics. PMID 27194751 DOI: 10.1534/Genetics.115.185363  0.8
2015 Ninova M, Ronshaugen M, Griffiths-Jones S. MicroRNA evolution, expression and function during short germband development in Tribolium castaneum. Genome Research. PMID 26518483 DOI: 10.1101/Gr.193367.115  1
2015 Gardner PP, Fasold M, Burge SW, Ninova M, Hertel J, Kehr S, Steeves TE, Griffiths-Jones S, Stadler PF. Conservation and losses of non-coding RNAs in avian genomes. Plos One. 10: e0121797. PMID 25822729 DOI: 10.1371/Journal.Pone.0121797  1
2015 Bleazard T, Lamb JA, Griffiths-Jones S. Bias in microRNA functional enrichment analysis. Bioinformatics (Oxford, England). 31: 1592-8. PMID 25609791 DOI: 10.1093/Bioinformatics/Btv023  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/Nar/Gku991  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093l/narlgku991  1
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093/nar/gku991  1
2014 Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Griffiths-Jones S, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005  1
2014 Hooks KB, Delneri D, Griffiths-Jones S. Intron evolution in Saccharomycetaceae. Genome Biology and Evolution. 6: 2543-56. PMID 25364803 DOI: 10.1093/Gbe/Evu196  1
2014 Ninova M, Ronshaugen M, Griffiths-Jones S. Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model. Genome Biology and Evolution. 6: 2459-67. PMID 25169982 DOI: 10.1093/Gbe/Evu183  1
2014 Kozomara A, Hunt S, Ninova M, Griffiths-Jones S, Ronshaugen M. Target repression induced by endogenous microRNAs: large differences, small effects. Plos One. 9: e104286. PMID 25141277 DOI: 10.1371/Journal.Pone.0104286  1
2014 Arthanari Y, Heintzen C, Griffiths-Jones S, Crosthwaite SK. Natural antisense transcripts and long non-coding RNA in Neurospora crassa. Plos One. 9: e91353. PMID 24621812 DOI: 10.1371/Journal.Pone.0091353  1
2014 Ninova M, Ronshaugen M, Griffiths-Jones S. Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis. Rna (New York, N.Y.). 20: 360-72. PMID 24448446 DOI: 10.1261/Rna.041657.113  1
2014 Rogers HH, Griffiths-Jones S. tRNA anticodon shifts in eukaryotic genomes. Rna (New York, N.Y.). 20: 269-81. PMID 24442610 DOI: 10.1261/Rna.041681.113  1
2014 Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Research. 42: D68-73. PMID 24275495 DOI: 10.1093/Nar/Gkt1181  1
2013 Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M. Sex-biased expression of microRNAs in Schistosoma mansoni. Plos Neglected Tropical Diseases. 7: e2402. PMID 24069470 DOI: 10.1371/Journal.Pntd.0002402  1
2013 Marco A, Ninova M, Griffiths-Jones S. Multiple products from microRNA transcripts. Biochemical Society Transactions. 41: 850-4. PMID 23863143 DOI: 10.1042/Bst20130035  1
2013 Marco A, Ninova M, Ronshaugen M, Griffiths-Jones S. Clusters of microRNAs emerge by new hairpins in existing transcripts. Nucleic Acids Research. 41: 7745-52. PMID 23775791 DOI: 10.1093/Nar/Gkt534  1
2013 Hui JH, Marco A, Hunt S, Melling J, Griffiths-Jones S, Ronshaugen M. Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Research. 41: 3352-61. PMID 23335784 DOI: 10.1093/Nar/Gks1445  1
2012 Marco A, Macpherson JI, Ronshaugen M, Griffiths-Jones S. MicroRNAs from the same precursor have different targeting properties. Silence. 3: 8. PMID 23016695 DOI: 10.1186/1758-907X-3-8  1
2012 Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T. Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence. 3: 4. PMID 22647250 DOI: 10.1186/1758-907X-3-4  1
2012 Rogers HH, Griffiths-Jones S. Mitochondrial pseudogenes in the nuclear genomes of Drosophila. Plos One. 7: e32593. PMID 22412894 DOI: 10.1371/Journal.Pone.0032593  1
2012 Marco A, Hooks K, Griffiths-Jones S. Evolution and function of the extended miR-2 microRNA family. Rna Biology. 9: 242-8. PMID 22336713 DOI: 10.4161/Rna.19160  1
2012 Marco A, Griffiths-Jones S. Detection of microRNAs in color space. Bioinformatics (Oxford, England). 28: 318-23. PMID 22171334 DOI: 10.1093/Bioinformatics/Btr686  1
2011 Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/Rna.2750811  1
2011 Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF. Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain. Bmc Genomics. 12: 277. PMID 21627805 DOI: 10.1186/1471-2164-12-277  1
2011 Hooks KB, Griffiths-Jones S. Conserved RNA structures in the non-canonical Hac1/Xbp1 intron. Rna Biology. 8: 552-6. PMID 21593604 DOI: 10.4161/Rna.8.4.15396  1
2011 Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M. MicroRNA evolution by arm switching. Embo Reports. 12: 172-7. PMID 21212805 DOI: 10.1038/Embor.2010.191  1
2011 Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/Nar/Gkq1129  1
2011 Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Research. 39: D152-7. PMID 21037258 DOI: 10.1093/Nar/Gkq1027  1
2010 Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S. Functional shifts in insect microRNA evolution. Genome Biology and Evolution. 2: 686-96. PMID 20817720 DOI: 10.1093/Gbe/Evq053  1
2010 Rogers HH, Bergman CM, Griffiths-Jones S. The evolution of tRNA genes in Drosophila. Genome Biology and Evolution. 2: 467-77. PMID 20624748 DOI: 10.1093/Gbe/Evq034  1
2010 Griffiths-Jones S. miRBase: microRNA sequences and annotation. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.9.1-10. PMID 20205188 DOI: 10.1002/0471250953.bi1209s29  1
2009 Griffiths-Jones S. The role of RNA molecules in cellular biology. Editorial. Briefings in Functional Genomics & Proteomics. 8: 405-6. PMID 19833697 DOI: 10.1093/bfgp/elp044  1
2009 Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/Nar/Gkn766  1
2009 Mimouni NK, Lyngsø RB, Griffiths-Jones S, Hein J. An analysis of structural influences on selection in RNA genes. Molecular Biology and Evolution. 26: 209-16. PMID 18948299 DOI: 10.1093/Molbev/Msn240  1
2008 Saini HK, Enright AJ, Griffiths-Jones S. Annotation of mammalian primary microRNAs. Bmc Genomics. 9: 564. PMID 19038026 DOI: 10.1186/1471-2164-9-564  1
2008 Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. The RNA WikiProject: community annotation of RNA families. Rna (New York, N.Y.). 14: 2462-4. PMID 18945806 DOI: 10.1261/Rna.1200508  1
2008 Smits G, Mungall AJ, Griffiths-Jones S, Smith P, Beury D, Matthews L, Rogers J, Pask AJ, Shaw G, VandeBerg JL, McCarrey JR, Renfree MB, Reik W, Dunham I. Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians. Nature Genetics. 40: 971-6. PMID 18587395 DOI: 10.1038/Ng.168  1
2008 Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A. Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum. Genome Research. 18: 281-92. PMID 18096748 DOI: 10.1101/Gr.6836108  1
2008 Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Research. 36: D154-8. PMID 17991681 DOI: 10.1093/Nar/Gkm952  1
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Griffiths-Jones S, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  1
2007 Saini HK, Griffiths-Jones S, Enright AJ. Genomic analysis of human microRNA transcripts. Proceedings of the National Academy of Sciences of the United States of America. 104: 17719-24. PMID 17965236 DOI: 10.1073/Pnas.0703890104  1
2007 Griffiths-Jones S. Annotating noncoding RNA genes. Annual Review of Genomics and Human Genetics. 8: 279-98. PMID 17506659 DOI: 10.1146/Annurev.Genom.8.080706.092419  1
2007 Enright AJ, Griffiths-Jones S. miRBase: A database of microRNA sequences, targets and nomenclature Micrornas: From Basic Science to Disease Biology. 157-171. DOI: 10.1017/CBO9780511541766.014  1
2006 Griffiths-Jones S. miRBase: the microRNA sequence database. Methods in Molecular Biology (Clifton, N.J.). 342: 129-38. PMID 16957372 DOI: 10.1385/1-59745-123-1:129  1
2006 Gregory SG, Barlow KF, McLay KE, Kaul R, Swarbreck D, Dunham A, Scott CE, Howe KL, Woodfine K, Spencer CC, Jones MC, Gillson C, Searle S, Zhou Y, Kokocinski F, ... ... Griffiths-Jones S, et al. The DNA sequence and biological annotation of human chromosome 1. Nature. 441: 315-21. PMID 16710414 DOI: 10.1038/Nature04727  1
2006 Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149  1
2006 Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research. 34: D140-4. PMID 16381832 DOI: 10.1093/Nar/Gkj112  1
2005 Griffiths-Jones S. Annotating non-coding RNAs with Rfam. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.5. PMID 18428745 DOI: 10.1002/0471250953.bi1205s9  1
2005 Stricklin SL, Griffiths-Jones S, Eddy SR. C. elegans noncoding RNA genes. Wormbook : the Online Review of C. Elegans Biology. 1-7. PMID 18023116 DOI: 10.1895/Wormbook.1.1.1  1
2005 Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, BaÅŸtürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, ... ... Griffiths-Jones S, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438: 1105-15. PMID 16372000 DOI: 10.1038/Nature04341  1
2005 Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, Kerhornou A, Aslett M, Bishop R, Bouchier C, Cochet M, Coulson RM, Cronin A, de Villiers EP, Fraser A, ... ... Griffiths-Jones S, et al. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science (New York, N.Y.). 309: 131-3. PMID 15994557 DOI: 10.1126/Science.1110418  1
2005 Mourier T, Pain A, Barrell B, Griffiths-Jones S. A selenocysteine tRNA and SECIS element in Plasmodium falciparum. Rna (New York, N.Y.). 11: 119-22. PMID 15659354 DOI: 10.1261/Rna.7185605  1
2005 Jenkins JA, Griffiths-Jones S, Shewry PR, Breiteneder H, Mills EN. Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: an in silico analysis. The Journal of Allergy and Clinical Immunology. 115: 163-70. PMID 15637564 DOI: 10.1016/J.Jaci.2004.10.026  1
2005 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/Nar/Gki081  1
2005 Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, et al. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Research. 15: 174-83. PMID 15590942 DOI: 10.1101/Gr.3011405  1
2005 Griffiths-Jones S. RALEE--RNA ALignment editor in Emacs. Bioinformatics (Oxford, England). 21: 257-9. PMID 15377506 DOI: 10.1093/Bioinformatics/Bth489  1
2004 Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Research. 14: 1902-10. PMID 15364901 DOI: 10.1101/Gr.2722704  1
2004 Humphray SJ, Oliver K, Hunt AR, Plumb RW, Loveland JE, Howe KL, Andrews TD, Searle S, Hunt SE, Scott CE, Jones MC, Ainscough R, Almeida JP, Ambrose KD, Ashwell RI, ... ... Griffiths-Jones S, et al. DNA sequence and analysis of human chromosome 9. Nature. 429: 369-74. PMID 15164053 DOI: 10.1038/Nature02465  1
2004 Dunham A, Matthews LH, Burton J, Ashurst JL, Howe KL, Ashcroft KJ, Beare DM, Burford DC, Hunt SE, Griffiths-Jones S, Jones MC, Keenan SJ, Oliver K, Scott CE, Ainscough R, et al. The DNA sequence and analysis of human chromosome 13. Nature. 428: 522-8. PMID 15057823 DOI: 10.1038/nature02379  1
2004 Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121  1
2004 Griffiths-Jones S. The microRNA Registry. Nucleic Acids Research. 32: D109-11. PMID 14681370 DOI: 10.1093/Nar/Gkh023  1
2004 Mills ENC, Jenkins JA, Robertson JA, Griffiths-Jones S, Shewry PR. Identifying allergenic proteins in food Pesticide, Veterinary and Other Residues in Food. 577-597. DOI: 10.1016/B978-1-85573-734-1.50026-5  1
2003 Finn R, Griffiths-Jones S, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18428696 DOI: 10.1002/0471250953.Bi0205S01  1
2003 Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... Griffiths-Jones S, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/Journal.Pbio.0000045  1
2003 Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T. A uniform system for microRNA annotation. Rna (New York, N.Y.). 9: 277-9. PMID 12592000 DOI: 10.1261/Rna.2183803  1
2003 Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/Nar/Gkg006  1
2003 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, ... ... Griffiths-Jones S, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046  1
2002 Shewry PR, Beaudoin F, Jenkins J, Griffiths-Jones S, Mills EN. Plant protein families and their relationships to food allergy. Biochemical Society Transactions. 30: 906-10. PMID 12440943 DOI: 10.1042/Bst0300906  1
2002 Griffiths-Jones S, Bateman A. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics (Oxford, England). 18: 1243-9. PMID 12217916 DOI: 10.1093/Bioinformatics/18.9.1243  1
2002 Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314  1
2001 Sharman GJ, Griffiths-Jones SR, Jourdan M, Searle MS. Effects of amino acid phi,psi propensities and secondary structure interactions in modulating H alpha chemical shifts in peptide and protein beta-sheet. Journal of the American Chemical Society. 123: 12318-24. PMID 11734033 DOI: 10.1021/ja0116369  1
2000 Jourdan M, Griffiths-Jones SR, Searle MS. Folding of a beta-hairpin peptide derived from the N-terminus of ubiquitin. Conformational preferences of beta-turn residues dictate non-native beta-strand interactions. European Journal of Biochemistry / Febs. 267: 3539-48. PMID 10848970 DOI: 10.1046/J.1432-1327.2000.01381.X  1
2000 Colley CS, Griffiths-Jones SR, George MW, Searle MS. Do interstrand hydrogen bonds contribute to β-hairpin peptide stability in solution? IR analysis of peptide folding in water Chemical Communications. 593-594.  1
2000 Colley CS, Clark IP, Griffiths-Jones SR, George MW, Searle MS. Steady state and time-resolved IR spectroscopy of the native and unfolded states of bovine ubiquitin: Protein stability and temperature-jump kinetic measurements of protein folding at low pH Chemical Communications. 1493-1494.  1
2000 Griffiths-Jones SR, Searle MS. Structure, folding, and energetics of cooperative interactions between the ß-strands of a de Novo designed three-stranded antiparallel ß-sheet peptide Journal of the American Chemical Society. 122: 8350-8356.  1
1999 Griffiths-Jones SR, Maynard AJ, Searle MS. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding. Journal of Molecular Biology. 292: 1051-69. PMID 10512702 DOI: 10.1006/Jmbi.1999.3119  1
1999 Searle MS, Griffiths-Jones SR, Skinner-Smith H. Energetics of weak interactions in a β-hairpin peptide: Electrostatic and hydrophobic contributions to stability from lysine salt bridges Journal of the American Chemical Society. 121: 11615-11620. DOI: 10.1021/Ja992029C  1
1998 Griffiths-Jones SR, Sharman GJ, Maynard AJ, Searle MS. Modulation of intrinsic phi,psi propensities of amino acids by neighbouring residues in the coil regions of protein structures: NMR analysis and dissection of a beta-hairpin peptide. Journal of Molecular Biology. 284: 1597-609. PMID 9878373 DOI: 10.1006/Jmbi.1998.2264  1
1998 Griffiths-Jones SR, Maynard AJ, Sharman GJ, Searle MS. NMR evidence for the nucleation of a β-hairpin peptide conformation in water by an Asn-Gly type I′ β-turn sequence Chemical Communications. 789-790.  1
Show low-probability matches.