Sam Griffiths-Jones, PhD - Publications

Faculty of Life Sciences University of Manchester, Manchester, England, United Kingdom 

86 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Calvo L, Birgaoanu M, Pettini T, Ronshaugen M, Griffiths-Jones S. The embryonic transcriptome of Parhyale hawaiensis reveals different dynamics of microRNAs and mRNAs during the maternal-zygotic transition. Scientific Reports. 12: 174. PMID 34996916 DOI: 10.1038/s41598-021-03642-9  0.415
2020 Layton E, Fairhurst AM, Griffiths-Jones S, Grencis RK, Roberts IS. Regulatory RNAs: A Universal Language for Inter-Domain Communication. International Journal of Molecular Sciences. 21. PMID 33255483 DOI: 10.3390/ijms21238919  0.309
2020 Kalvari I, Nawrocki EP, Ontiveros-Palacios N, Argasinska J, Lamkiewicz K, Marz M, Griffiths-Jones S, Toffano-Nioche C, Gautheret D, Weinberg Z, Rivas E, Eddy SR, Finn RD, Bateman A, Petrov AI. Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Research. PMID 33211869 DOI: 10.1093/nar/gkaa1047  0.552
2020 Minchington TG, Griffiths-Jones S, Papalopulu N. Dynamical gene regulatory networks are tuned by transcriptional autoregulation with microRNA feedback. Scientific Reports. 10: 12960. PMID 32737375 DOI: 10.1038/S41598-020-69791-5  0.326
2020 Fromm B, Keller A, Yang X, Friedlander MR, Peterson KJ, Griffiths-Jones S. Quo vadis microRNAs? Trends in Genetics : Tig. 36: 461-463. PMID 32544447 DOI: 10.1016/J.Tig.2020.03.007  0.379
2020 Griffiths R, Woods S, Cheng A, Wang P, Griffiths-Jones S, Ronshaugen M, Kimber SJ. The Transcription Factor-microRNA Regulatory Network during hESC-chondrogenesis. Scientific Reports. 10: 4744. PMID 32179818 DOI: 10.1038/S41598-020-61734-4  0.405
2020 Herndon N, Shelton J, Gerischer L, Ioannidis P, Ninova M, Dönitz J, Waterhouse RM, Liang C, Damm C, Siemanowski J, Kitzmann P, Ulrich J, Dippel S, Oberhofer G, Hu Y, ... ... Griffiths-Jones S, et al. Enhanced genome assembly and a new official gene set for Tribolium castaneum. Bmc Genomics. 21: 47. PMID 31937263 DOI: 10.1186/S12864-019-6394-6  0.446
2019 Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay SJE, Cochrane G, ... ... Griffiths-Jones S, et al. Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] Nucleic Acids Research. 47. PMID 30535383 DOI: 10.1093/Nar/Gky1206  0.521
2019 Sweeney BA, Petrov AI, Burkov B, Finn RD, Bateman A, Szymanski M, Karlowski WM, Gorodkin J, Seemann SE, Cannone JJ, Gutell RR, Fey P, Basu S, Kay S, Cochrane G, ... ... Griffiths-Jones S, et al. RNAcentral: a hub of information for non-coding RNA sequences Nucleic Acids Research. 47. PMID 30395267 DOI: 10.1093/Nar/Gky1034  0.663
2018 Kozomara A, Birgaoanu M, Griffiths-Jones S. miRBase: from microRNA sequences to function. Nucleic Acids Research. PMID 30423142 DOI: 10.1093/Nar/Gky1141  0.516
2018 Parker S, Fraczek MG, Wu J, Shamsah S, Manousaki A, Dungrattanalert K, de Almeida RA, Invernizzi E, Burgis T, Omara W, Griffiths-Jones S, Delneri D, O'Keefe RT. Large-scale profiling of noncoding RNA function in yeast. Plos Genetics. 14: e1007253. PMID 29529031 DOI: 10.1371/Journal.Pgen.1007253  0.366
2017 D'Ario M, Griffiths-Jones S, Kim M. Small RNAs: Big Impact on Plant Development. Trends in Plant Science. PMID 29032035 DOI: 10.1016/J.Tplants.2017.09.009  0.384
2017 Ninova M, Griffiths-Jones S, Ronshaugen M. Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis. Genome Biology. 18: 184. PMID 28950880 DOI: 10.1186/S13059-017-1304-1  0.393
2017 Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, ... ... Griffiths-Jones S, et al. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. Bmc Biology. 15: 62. PMID 28756775 DOI: 10.1186/S12915-017-0399-X  0.387
2017 Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, et al. RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. 45: D128-D134. PMID 27794554 DOI: 10.1093/Nar/Gkw1008  0.64
2016 Jenkinson EM, Rodero MP, Kasher PR, Uggenti C, Oojageer A, Goosey LC, Rose Y, Kershaw CJ, Urquhart JE, Williams SG, Bhaskar SS, O'Sullivan J, Baerlocher GM, Haubitz M, Aubert G, ... ... Griffiths-Jones S, et al. Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts. Nature Genetics. PMID 27571260 DOI: 10.1038/Ng.3661  0.324
2016 Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP. Pervasive microRNA duplication in chelicerates: insights from the embryonic microRNA repertoire of the spider Parasteatoda tepidariorum. Genome Biology and Evolution. PMID 27324919 DOI: 10.1093/Gbe/Evw143  0.499
2016 Hooks KB, Naseeb S, Parker S, Griffiths-Jones S, Delneri D. Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae. Genetics. PMID 27194751 DOI: 10.1534/Genetics.115.185363  0.447
2015 Ninova M, Ronshaugen M, Griffiths-Jones S. MicroRNA evolution, expression and function during short germband development in Tribolium castaneum. Genome Research. PMID 26518483 DOI: 10.1101/Gr.193367.115  0.491
2015 Gardner PP, Fasold M, Burge SW, Ninova M, Hertel J, Kehr S, Steeves TE, Griffiths-Jones S, Stadler PF. Conservation and losses of non-coding RNAs in avian genomes. Plos One. 10: e0121797. PMID 25822729 DOI: 10.1371/Journal.Pone.0121797  0.492
2015 Bleazard T, Lamb JA, Griffiths-Jones S. Bias in microRNA functional enrichment analysis. Bioinformatics (Oxford, England). 31: 1592-8. PMID 25609791 DOI: 10.1093/Bioinformatics/Btv023  0.358
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, et al. RNAcentral: an international database of ncRNA sequences. Nucleic Acids Research. 43: D123-9. PMID 25352543 DOI: 10.1093/Nar/Gku991  0.633
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093l/narlgku991  0.529
2015 Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, et al. RNAcentral: An international database of ncRNA sequences Nucleic Acids Research. 43: D123-D129. DOI: 10.1093/nar/gku991  0.529
2014 Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Griffiths-Jones S, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005  0.448
2014 Hooks KB, Delneri D, Griffiths-Jones S. Intron evolution in Saccharomycetaceae. Genome Biology and Evolution. 6: 2543-56. PMID 25364803 DOI: 10.1093/Gbe/Evu196  0.44
2014 Ninova M, Ronshaugen M, Griffiths-Jones S. Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model. Genome Biology and Evolution. 6: 2459-67. PMID 25169982 DOI: 10.1093/Gbe/Evu183  0.417
2014 Kozomara A, Hunt S, Ninova M, Griffiths-Jones S, Ronshaugen M. Target repression induced by endogenous microRNAs: large differences, small effects. Plos One. 9: e104286. PMID 25141277 DOI: 10.1371/Journal.Pone.0104286  0.39
2014 Arthanari Y, Heintzen C, Griffiths-Jones S, Crosthwaite SK. Natural antisense transcripts and long non-coding RNA in Neurospora crassa. Plos One. 9: e91353. PMID 24621812 DOI: 10.1371/Journal.Pone.0091353  0.381
2014 Ninova M, Ronshaugen M, Griffiths-Jones S. Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis. Rna (New York, N.Y.). 20: 360-72. PMID 24448446 DOI: 10.1261/Rna.041657.113  0.461
2014 Rogers HH, Griffiths-Jones S. tRNA anticodon shifts in eukaryotic genomes. Rna (New York, N.Y.). 20: 269-81. PMID 24442610 DOI: 10.1261/Rna.041681.113  0.405
2014 Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Research. 42: D68-73. PMID 24275495 DOI: 10.1093/Nar/Gkt1181  0.507
2013 Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M. Sex-biased expression of microRNAs in Schistosoma mansoni. Plos Neglected Tropical Diseases. 7: e2402. PMID 24069470 DOI: 10.1371/Journal.Pntd.0002402  0.606
2013 Marco A, Ninova M, Griffiths-Jones S. Multiple products from microRNA transcripts. Biochemical Society Transactions. 41: 850-4. PMID 23863143 DOI: 10.1042/Bst20130035  0.646
2013 Marco A, Ninova M, Ronshaugen M, Griffiths-Jones S. Clusters of microRNAs emerge by new hairpins in existing transcripts. Nucleic Acids Research. 41: 7745-52. PMID 23775791 DOI: 10.1093/Nar/Gkt534  0.601
2013 Hui JH, Marco A, Hunt S, Melling J, Griffiths-Jones S, Ronshaugen M. Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Research. 41: 3352-61. PMID 23335784 DOI: 10.1093/Nar/Gks1445  0.59
2012 Marco A, Macpherson JI, Ronshaugen M, Griffiths-Jones S. MicroRNAs from the same precursor have different targeting properties. Silence. 3: 8. PMID 23016695 DOI: 10.1186/1758-907X-3-8  0.65
2012 Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T. Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence. 3: 4. PMID 22647250 DOI: 10.1186/1758-907X-3-4  0.477
2012 Rogers HH, Griffiths-Jones S. Mitochondrial pseudogenes in the nuclear genomes of Drosophila. Plos One. 7: e32593. PMID 22412894 DOI: 10.1371/Journal.Pone.0032593  0.353
2012 Marco A, Hooks K, Griffiths-Jones S. Evolution and function of the extended miR-2 microRNA family. Rna Biology. 9: 242-8. PMID 22336713 DOI: 10.4161/Rna.19160  0.651
2012 Marco A, Griffiths-Jones S. Detection of microRNAs in color space. Bioinformatics (Oxford, England). 28: 318-23. PMID 22171334 DOI: 10.1093/Bioinformatics/Btr686  0.656
2011 Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, et al. RNAcentral: A vision for an international database of RNA sequences. Rna (New York, N.Y.). 17: 1941-6. PMID 21940779 DOI: 10.1261/Rna.2750811  0.589
2011 Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF. Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain. Bmc Genomics. 12: 277. PMID 21627805 DOI: 10.1186/1471-2164-12-277  0.393
2011 Hooks KB, Griffiths-Jones S. Conserved RNA structures in the non-canonical Hac1/Xbp1 intron. Rna Biology. 8: 552-6. PMID 21593604 DOI: 10.4161/Rna.8.4.15396  0.43
2011 Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M. MicroRNA evolution by arm switching. Embo Reports. 12: 172-7. PMID 21212805 DOI: 10.1038/Embor.2010.191  0.646
2011 Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/Nar/Gkq1129  0.602
2011 Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Research. 39: D152-7. PMID 21037258 DOI: 10.1093/Nar/Gkq1027  0.514
2010 Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S. Functional shifts in insect microRNA evolution. Genome Biology and Evolution. 2: 686-96. PMID 20817720 DOI: 10.1093/Gbe/Evq053  0.654
2010 Rogers HH, Bergman CM, Griffiths-Jones S. The evolution of tRNA genes in Drosophila. Genome Biology and Evolution. 2: 467-77. PMID 20624748 DOI: 10.1093/Gbe/Evq034  0.614
2010 Griffiths-Jones S. miRBase: microRNA sequences and annotation. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.9.1-10. PMID 20205188 DOI: 10.1002/0471250953.bi1209s29  0.363
2009 Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/Nar/Gkn766  0.646
2009 Mimouni NK, Lyngsø RB, Griffiths-Jones S, Hein J. An analysis of structural influences on selection in RNA genes. Molecular Biology and Evolution. 26: 209-16. PMID 18948299 DOI: 10.1093/Molbev/Msn240  0.433
2009 Hui JH, Griffiths-Jones S, Ronshaugen M. 01-P017 The evolution of miR-10 family function in animal development Mechanisms of Development. 126: S56. DOI: 10.1016/J.Mod.2009.06.018  0.309
2008 Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311  0.439
2008 Saini HK, Enright AJ, Griffiths-Jones S. Annotation of mammalian primary microRNAs. Bmc Genomics. 9: 564. PMID 19038026 DOI: 10.1186/1471-2164-9-564  0.399
2008 Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. The RNA WikiProject: community annotation of RNA families. Rna (New York, N.Y.). 14: 2462-4. PMID 18945806 DOI: 10.1261/Rna.1200508  0.57
2008 Smits G, Mungall AJ, Griffiths-Jones S, Smith P, Beury D, Matthews L, Rogers J, Pask AJ, Shaw G, VandeBerg JL, McCarrey JR, Renfree MB, Reik W, Dunham I. Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians. Nature Genetics. 40: 971-6. PMID 18587395 DOI: 10.1038/Ng.168  0.387
2008 Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A. Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum. Genome Research. 18: 281-92. PMID 18096748 DOI: 10.1101/Gr.6836108  0.415
2008 Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Research. 36: D154-8. PMID 17991681 DOI: 10.1093/Nar/Gkm952  0.464
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Griffiths-Jones S, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.675
2007 Saini HK, Griffiths-Jones S, Enright AJ. Genomic analysis of human microRNA transcripts. Proceedings of the National Academy of Sciences of the United States of America. 104: 17719-24. PMID 17965236 DOI: 10.1073/Pnas.0703890104  0.437
2007 Griffiths-Jones S. Annotating noncoding RNA genes. Annual Review of Genomics and Human Genetics. 8: 279-98. PMID 17506659 DOI: 10.1146/Annurev.Genom.8.080706.092419  0.469
2007 Enright AJ, Griffiths-Jones S. miRBase: A database of microRNA sequences, targets and nomenclature Micrornas: From Basic Science to Disease Biology. 157-171. DOI: 10.1017/CBO9780511541766.014  0.325
2006 Griffiths-Jones S. miRBase: the microRNA sequence database. Methods in Molecular Biology (Clifton, N.J.). 342: 129-38. PMID 16957372 DOI: 10.1385/1-59745-123-1:129  0.473
2006 Gregory SG, Barlow KF, McLay KE, Kaul R, Swarbreck D, Dunham A, Scott CE, Howe KL, Woodfine K, Spencer CC, Jones MC, Gillson C, Searle S, Zhou Y, Kokocinski F, ... ... Griffiths-Jones S, et al. The DNA sequence and biological annotation of human chromosome 1. Nature. 441: 315-21. PMID 16710414 DOI: 10.1038/Nature04727  0.387
2006 Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149  0.52
2006 Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Research. 34: D140-4. PMID 16381832 DOI: 10.1093/Nar/Gkj112  0.632
2005 Griffiths-Jones S. Annotating non-coding RNAs with Rfam. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 12.5. PMID 18428745 DOI: 10.1002/0471250953.bi1205s9  0.407
2005 Stricklin SL, Griffiths-Jones S, Eddy SR. C. elegans noncoding RNA genes. Wormbook : the Online Review of C. Elegans Biology. 1-7. PMID 18023116 DOI: 10.1895/Wormbook.1.1.1  0.445
2005 Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, BaÅŸtürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, ... ... Griffiths-Jones S, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438: 1105-15. PMID 16372000 DOI: 10.1038/Nature04341  0.461
2005 Pain A, Renauld H, Berriman M, Murphy L, Yeats CA, Weir W, Kerhornou A, Aslett M, Bishop R, Bouchier C, Cochet M, Coulson RM, Cronin A, de Villiers EP, Fraser A, ... ... Griffiths-Jones S, et al. Genome of the host-cell transforming parasite Theileria annulata compared with T. parva. Science (New York, N.Y.). 309: 131-3. PMID 15994557 DOI: 10.1126/Science.1110418  0.372
2005 Mourier T, Pain A, Barrell B, Griffiths-Jones S. A selenocysteine tRNA and SECIS element in Plasmodium falciparum. Rna (New York, N.Y.). 11: 119-22. PMID 15659354 DOI: 10.1261/Rna.7185605  0.389
2005 Jenkins JA, Griffiths-Jones S, Shewry PR, Breiteneder H, Mills EN. Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: an in silico analysis. The Journal of Allergy and Clinical Immunology. 115: 163-70. PMID 15637564 DOI: 10.1016/J.Jaci.2004.10.026  0.365
2005 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/Nar/Gki081  0.639
2005 Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, et al. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Research. 15: 174-83. PMID 15590942 DOI: 10.1101/Gr.3011405  0.493
2005 Griffiths-Jones S. RALEE--RNA ALignment editor in Emacs. Bioinformatics (Oxford, England). 21: 257-9. PMID 15377506 DOI: 10.1093/Bioinformatics/Bth489  0.431
2004 Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Research. 14: 1902-10. PMID 15364901 DOI: 10.1101/Gr.2722704  0.45
2004 Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121  0.477
2004 Griffiths-Jones S. The microRNA Registry. Nucleic Acids Research. 32: D109-11. PMID 14681370 DOI: 10.1093/Nar/Gkh023  0.422
2003 Finn R, Griffiths-Jones S, Bateman A. Identifying protein domains with the Pfam database. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 2.5. PMID 18428696 DOI: 10.1002/0471250953.Bi0205S01  0.565
2003 Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, ... Griffiths-Jones S, et al. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Plos Biology. 1: E45. PMID 14624247 DOI: 10.1371/Journal.Pbio.0000045  0.379
2003 Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T. A uniform system for microRNA annotation. Rna (New York, N.Y.). 9: 277-9. PMID 12592000 DOI: 10.1261/Rna.2183803  0.437
2003 Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/Nar/Gkg006  0.639
2003 Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, ... ... Griffiths-Jones S, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046  0.557
2002 Griffiths-Jones S, Bateman A. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinformatics (Oxford, England). 18: 1243-9. PMID 12217916 DOI: 10.1093/Bioinformatics/18.9.1243  0.579
2002 Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Research. 30: 276-80. PMID 11752314  0.53
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