Goran Nenadic, PhD - Publications

Affiliations: 
School of Computer Science University of Manchester, Manchester, England, United Kingdom 
Website:
http://personalpages.manchester.ac.uk/staff/G.Nenadic/

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Flórez-Vargas O, Brass A, Karystianis G, Bramhall M, Stevens R, Cruickshank S, Nenadic G. Bias in the reporting of sex and age in biomedical research on mouse models. Elife. 5. PMID 26939790 DOI: 10.7554/Elife.13615  0.72
2016 Karystianis G, Sheppard T, Dixon WG, Nenadic G. Modelling and extraction of variability in free-text medication prescriptions from an anonymised primary care electronic medical record research database. Bmc Medical Informatics and Decision Making. 16: 18. PMID 26860263 DOI: 10.1186/S12911-016-0255-X  0.72
2016 Dehghan A, Liptrot T, Tibble D, Barker-Hewitt M, Nenadic G. Identification of occupation mentions in clinical narratives Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9612: 359-365. DOI: 10.1007/978-3-319-41754-7_35  0.72
2015 Wu C, Schwartz JM, Brabant G, Peng SL, Nenadic G. Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events. Bmc Systems Biology. 9: S5. PMID 26679379 DOI: 10.1186/1752-0509-9-S6-S5  0.72
2015 Stoney RA, Ames RM, Nenadic G, Robertson DL, Schwartz JM. Disentangling the multigenic and pleiotropic nature of molecular function. Bmc Systems Biology. 9: S3. PMID 26678917 DOI: 10.1186/1752-0509-9-S6-S3  0.72
2015 Dehghan A, Kovacevic A, Karystianis G, Keane JA, Nenadic G. Combining knowledge- and data-driven methods for de-identification of clinical narratives. Journal of Biomedical Informatics. PMID 26210359 DOI: 10.1016/J.Jbi.2015.06.029  0.72
2015 Karystianis G, Dehghan A, Kovacevic A, Keane JA, Nenadic G. Using local lexicalized rules to identify heart disease risk factors in clinical notes. Journal of Biomedical Informatics. PMID 26133479 DOI: 10.1016/J.Jbi.2015.06.013  0.72
2015 Duck G, Kovacevic A, Robertson DL, Stevens R, Nenadic G. Ambiguity and variability of database and software names in bioinformatics. Journal of Biomedical Semantics. 6: 29. PMID 26131352 DOI: 10.1186/S13326-015-0026-0  0.72
2015 Koliopoulos AK, Yiapanis P, Tekiner F, Nenadic G, Keane J. A Parallel Distributed Weka Framework for Big Data Mining Using Spark Proceedings - 2015 Ieee International Congress On Big Data, Bigdata Congress 2015. 9-16. DOI: 10.1109/BigDataCongress.2015.12  0.72
2015 Filannino M, Nenadic G. Temporal expression extraction with extensive feature type selection and a posteriori label adjustment Data and Knowledge Engineering. 100: 19-33. DOI: 10.1016/j.datak.2015.09.002  0.72
2015 Nenadic G. Contextualisation of biomedical knowledge through large-scale processing of literature, clinical narratives and social media Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9105: 7-9. DOI: 10.1007/978-3-319-19551-3_2  0.72
2014 Wu C, Schwartz JM, Brabant G, Nenadic G. Molecular profiling of thyroid cancer subtypes using large-scale text mining. Bmc Medical Genomics. 7: S3. PMID 25521965 DOI: 10.1186/1755-8794-7-S3-S3  0.72
2014 Duck G, Nenadic G, Brass A, Robertson DL, Stevens R. Extracting patterns of database and software usage from the bioinformatics literature. Bioinformatics (Oxford, England). 30: i601-8. PMID 25161253 DOI: 10.1093/Bioinformatics/Btu471  0.72
2014 Spasi? I, Livsey J, Keane JA, Nenadi? G. Text mining of cancer-related information: review of current status and future directions. International Journal of Medical Informatics. 83: 605-23. PMID 25008281 DOI: 10.1016/J.Ijmedinf.2014.06.009  0.72
2014 Jamieson DG, Moss A, Kennedy M, Jones S, Nenadic G, Robertson DL, Sidders B. The pain interactome: connecting pain-specific protein interactions. Pain. 155: 2243-52. PMID 24978826 DOI: 10.1016/J.Pain.2014.06.020  0.72
2014 Karystianis G, Buchan I, Nenadic G. Mining characteristics of epidemiological studies from Medline: a case study in obesity. Journal of Biomedical Semantics. 5: 22. PMID 24949194 DOI: 10.1186/2041-1480-5-22  0.72
2014 Zaki Ali MM, Nenadic G, Theodoulidis B. Identification of multi-focal questions in question and answer reports Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8455: 126-137. DOI: 10.1007/978-3-319-07983-7_17  0.72
2013 Duck G, Nenadic G, Brass A, Robertson DL, Stevens R. bioNerDS: exploring bioinformatics' database and software use through literature mining. Bmc Bioinformatics. 14: 194. PMID 23768135 DOI: 10.1186/1471-2105-14-194  0.72
2013 Jamieson DG, Roberts PM, Robertson DL, Sidders B, Nenadic G. Cataloging the biomedical world of pain through semi-automated curation of molecular interactions. Database : the Journal of Biological Databases and Curation. 2013: bat033. PMID 23707966 DOI: 10.1093/Database/Bat033  0.72
2013 Kovacevic A, Dehghan A, Filannino M, Keane JA, Nenadic G. Combining rules and machine learning for extraction of temporal expressions and events from clinical narratives. Journal of the American Medical Informatics Association : Jamia. 20: 859-66. PMID 23605114 DOI: 10.1136/Amiajnl-2013-001625  0.72
2013 Hakenberg J, Nenadic G, Rebholz-Schuhmann D, Kim JD. Literature mining solutions for life science research. Advances in Bioinformatics. 2013: 320436. PMID 23365570 DOI: 10.1155/2013/320436  0.72
2013 Tian D, Gledson A, Antoniades A, Aristodimou A, Dimitrios N, Sahay R, Pan J, Stivaros S, Nenadic G, Zeng XJ, Keane J. A bayesian association rule mining algorithm Proceedings - 2013 Ieee International Conference On Systems, Man, and Cybernetics, Smc 2013. 3258-3264. DOI: 10.1109/SMC.2013.555  0.72
2013 Dehghan A, Keane JA, Nenadic G. Challenges in clinical named entity recognition for decision support Proceedings - 2013 Ieee International Conference On Systems, Man, and Cybernetics, Smc 2013. 947-951. DOI: 10.1109/SMC.2013.166  0.72
2012 Gerner M, Sarafraz F, Bergman CM, Nenadic G. BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events. Bioinformatics (Oxford, England). 28: 2154-61. PMID 22711795 DOI: 10.1093/Bioinformatics/Bts332  0.72
2012 Jamieson DG, Gerner M, Sarafraz F, Nenadic G, Robertson DL. Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database. Database : the Journal of Biological Databases and Curation. 2012: bas023. PMID 22529179 DOI: 10.1093/Database/Bas023  0.72
2012 Kovačević A, Konjović Z, Milosavljević B, Nenadic G. Mining methodologies from NLP publications: A case study in automatic terminology recognition Computer Speech and Language. 26: 105-126. DOI: 10.1016/J.Csl.2011.09.001  0.72
2011 Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM. pubmed2ensembl: a resource for mining the biological literature on genes. Plos One. 6: e24716. PMID 21980353 DOI: 10.1371/Journal.Pone.0024716  0.72
2011 Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM. The GNAT library for local and remote gene mention normalization. Bioinformatics (Oxford, England). 27: 2769-71. PMID 21813477 DOI: 10.1093/Bioinformatics/Btr455  0.72
2011 Morrison N, Hancock D, Hirschman L, Dawyndt P, Verslyppe B, Kyrpides N, Kottmann R, Yilmaz P, Glöckner FO, Grethe J, Booth T, Sterk P, Nenadic G, Field D. Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets. Standards in Genomic Sciences. 4: 286-92. PMID 21677865 DOI: 10.4056/Sigs.1344279  0.72
2011 Afzal H, Eales J, Stevens R, Nenadic G. Mining semantic networks of bioinformatics e-resources from the literature. Journal of Biomedical Semantics. 2: S4. PMID 21388573 DOI: 10.1186/2041-1480-2-S1-S4  0.72
2010 Stivaros SM, Gledson A, Nenadic G, Zeng XJ, Keane J, Jackson A. Decision support systems for clinical radiological practice -- towards the next generation. The British Journal of Radiology. 83: 904-14. PMID 20965900 DOI: 10.1259/Bjr/33620087  0.72
2010 Spasic I, Sarafraz F, Keane JA, Nenadic G. Medication information extraction with linguistic pattern matching and semantic rules. Journal of the American Medical Informatics Association : Jamia. 17: 532-5. PMID 20819858 DOI: 10.1136/Jamia.2010.003657  0.72
2010 Rebholz-Schuhmann D, Nenadic G. Biomedical semantics: the hub for biomedical research 2.0. Journal of Biomedical Semantics. 1: 1. PMID 20618983 DOI: 10.1186/2041-1480-1-1  0.72
2010 Gerner M, Nenadic G, Bergman CM. LINNAEUS: a species name identification system for biomedical literature. Bmc Bioinformatics. 11: 85. PMID 20149233 DOI: 10.1186/1471-2105-11-85  0.72
2010 Sarafraz F, Nenadic G. Identification of negated regulation events in the literature: Exploring the feature space Ceur Workshop Proceedings. 714: 134-138.  0.72
2009 Yang H, Spasic I, Keane JA, Nenadic G. A text mining approach to the prediction of disease status from clinical discharge summaries. Journal of the American Medical Informatics Association : Jamia. 16: 596-600. PMID 19390098 DOI: 10.1197/Jamia.M3096  0.72
2009 Yang H, Keane J, Bergman CM, Nenadic G. Assigning roles to protein mentions: the case of transcription factors. Journal of Biomedical Informatics. 42: 887-94. PMID 19364541 DOI: 10.1016/J.Jbi.2009.04.001  0.72
2009 Latif S, Wood MM, Nenadic G. Correlation between human assessment of essays and ROUGE evaluation of essays' summaries 2009 8th International Symposium On Natural Language Processing, Snlp '09. 122-127. DOI: 10.1109/SNLP.2009.5340933  0.72
2009 Afzal H, Stevens R, Nenadic G. Mining semantic descriptions of bioinformatics web resources from the literature Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5554: 535-549. DOI: 10.1007/978-3-642-02121-3_40  0.72
2008 Yang H, Nenadic G, Keane JA. Identification of transcription factor contexts in literature using machine learning approaches. Bmc Bioinformatics. 9: S11. PMID 18426546 DOI: 10.1186/1471-2105-9-S3-S11  0.72
2008 Rebholz-Schuhmann D, Nenadic G. Towards standardisation of named-entity annotations in the life science literature 3rd International Symposium On Semantic Mining in Biomedicine, Smbm 2008 - Proceedings. 167-169.  0.72
2008 Afzal H, Stevens R, Nenadic G. Towards semantic annotation of bioinformatics services: Building a controlled vocabulary 3rd International Symposium On Semantic Mining in Biomedicine, Smbm 2008 - Proceedings. 5-12.  0.72
2006 Nenadić G, Ananiadou S. Mining semantically related terms from biomedical literature Acm Transactions On Asian Language Information Processing. 5: 22-43. DOI: 10.1145/1131348.1131351  0.72
2005 Rice SB, Nenadic G, Stapley BJ. Mining protein function from text using term-based support vector machines. Bmc Bioinformatics. 6: S22. PMID 15960835 DOI: 10.1186/1471-2105-6-S1-S22  0.72
2005 Nenadic G, Spasic I, Ananiadou S. Mining biomedical abstracts: What's in a term? Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3248: 797-806.  0.72
2004 Krauthammer M, Nenadic G. Term identification in the biomedical literature. Journal of Biomedical Informatics. 37: 512-26. PMID 15542023 DOI: 10.1016/J.Jbi.2004.08.004  0.72
2004 Nenadic G, Spasic I, Ananiadou S. Mining term similarities from corpora Terminology. 10: 55-80. DOI: 10.1075/Term.10.1.04Nen  0.72
2003 Nenadic G, Spasic I, Ananiadou S. Terminology-driven mining of biomedical literature. Bioinformatics (Oxford, England). 19: 938-43. PMID 12761055 DOI: 10.1093/bioinformatics/btg105  0.72
2002 Nenadi? G, Mima H, Spasi? I, Ananiadou S, Tsujii J. Terminology-driven literature mining and knowledge acquisition in biomedicine. International Journal of Medical Informatics. 67: 33-48. PMID 12460630 DOI: 10.1016/S1386-5056(02)00055-2  0.72
2000 Nenadic G, Spasic I. Recognition and acquisition of compound names from corpora Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 1835: 38-48.  0.72
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