Jose B. Pereira-Leal - Publications

Instituto Gulbenkian de Ciencia, Oeiras, Lisboa, Portugal 
evolution, computational biology, bioinformatics, cell biology

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Churro C, Semedo-Aguiar AP, Silva AD, Pereira-Leal JB, Leite RB. A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. Scientific Reports. 10: 8679. PMID 32457360 DOI: 10.1038/s41598-020-64774-y  0.96
2019 de Sousa AGG, Tomasino MP, Duarte P, Fernández-Méndez M, Assmy P, Ribeiro H, Surkont J, Leite RB, Pereira-Leal JB, Torgo L, Magalhães C. Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime. Microbial Ecology. PMID 30623212 DOI: 10.1007/s00248-018-01314-2  0.96
2018 Semedo-Aguiar AP, Pereira-Leal JB, Leite RB. Microbial Diversity and Toxin Risk in Tropical Freshwater Reservoirs of Cape Verde. Toxins. 10. PMID 29734762 DOI: 10.3390/Toxins10050186  0.96
2018 Rocha PRF, Silva AD, Godinho L, Dane W, Estrela P, Vandamme LKJ, Pereira-Leal JB, de Leeuw DM, Leite RB. Collective electrical oscillations of a diatom population induced by dark stress. Scientific Reports. 8: 5484. PMID 29615779 DOI: 10.1038/S41598-018-23928-9  0.96
2015 Surkont J, Diekmann Y, Ryder PV, Pereira-Leal JB. Coiled-coil length: Size does matter. Proteins. PMID 26387794 DOI: 10.1002/Prot.24932  0.68
2015 Reed P, Atilano ML, Alves R, Hoiczyk E, Sher X, Reichmann NT, Pereira PM, Roemer T, Filipe SR, Pereira-Leal JB, Ligoxygakis P, Pinho MG. Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance. Plos Pathogens. 11: e1004891. PMID 25951442 DOI: 10.1371/Journal.Ppat.1004891  0.68
2015 Diekmann Y, Pereira-Leal JB. Bioinformatic approaches to identifying and classifying Rab proteins. Methods in Molecular Biology (Clifton, N.J.). 1298: 17-28. PMID 25800829 DOI: 10.1007/978-1-4939-2569-8_2  0.68
2015 Surkont J, Pereira-Leal JB. Evolutionary patterns in coiled-coils. Genome Biology and Evolution. 7: 545-56. PMID 25577198 DOI: 10.1093/gbe/evv007  0.68
2014 Lynch M, Field MC, Goodson HV, Malik HS, Pereira-Leal JB, Roos DS, Turkewitz AP, Sazer S. Evolutionary cell biology: two origins, one objective. Proceedings of the National Academy of Sciences of the United States of America. 111: 16990-4. PMID 25404324 DOI: 10.1073/Pnas.1415861111  0.68
2014 Correia C, Diekmann Y, Vicente AM, Pereira-Leal JB. Hope for GWAS: relevant risk genes uncovered from GWAS statistical noise. International Journal of Molecular Sciences. 15: 17601-21. PMID 25268625 DOI: 10.3390/ijms151017601  0.68
2014 Pereira-Leal JB, Abreu IA, Alabaça CS, Almeida MH, Almeida P, Almeida T, Amorim MI, Araújo S, Azevedo H, Badia A, Batista D, Bohn A, Capote T, Carrasquinho I, Chaves I, et al. A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing. Bmc Genomics. 15: 371. PMID 24885229 DOI: 10.1186/1471-2164-15-371  0.68
2014 Marques I, Almeida P, Alves R, Dias MJ, Godinho A, Pereira-Leal JB. Bioinformatics projects supporting life-sciences learning in high schools. Plos Computational Biology. 10: e1003404. PMID 24465192 DOI: 10.1371/journal.pcbi.1003404  0.68
2013 Soares P, Alves RJ, Abecasis AB, Penha-Gonçalves C, Gomes MG, Pereira-Leal JB. inTB - a data integration platform for molecular and clinical epidemiological analysis of tuberculosis. Bmc Bioinformatics. 14: 264. PMID 24001185 DOI: 10.1186/1471-2105-14-264  0.68
2013 Lopes JS, Marques I, Soares P, Nebenzahl-Guimaraes H, Costa J, Miranda A, Duarte R, Alves A, Macedo R, Duarte TA, Barbosa T, Oliveira M, Nery JS, Boechat N, Pereira SM, ... ... Pereira-Leal J, et al. SNP typing reveals similarity in Mycobacterium tuberculosis genetic diversity between Portugal and Northeast Brazil. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 18: 238-46. PMID 23648425 DOI: 10.1016/j.meegid.2013.04.028  0.68
2013 Hochegger H, Hégarat N, Pereira-Leal JB. Aurora at the pole and equator: overlapping functions of Aurora kinases in the mitotic spindle. Open Biology. 3: 120185. PMID 23516109 DOI: 10.1098/rsob.120185  0.68
2013 Abecasis AB, Serrano M, Alves R, Quintais L, Pereira-Leal JB, Henriques AO. A genomic signature and the identification of new sporulation genes. Journal of Bacteriology. 195: 2101-15. PMID 23396918 DOI: 10.1128/JB.02110-12  0.68
2013 Diekmann Y, Pereira-Leal JB. Evolution of intracellular compartmentalization. The Biochemical Journal. 449: 319-31. PMID 23240612 DOI: 10.1042/BJ20120957  0.68
2012 Sousa FL, Alves RJ, Ribeiro MA, Pereira-Leal JB, Teixeira M, Pereira MM. The superfamily of heme-copper oxygen reductases: types and evolutionary considerations. Biochimica Et Biophysica Acta. 1817: 629-37. PMID 22001780 DOI: 10.1016/J.Bbabio.2011.09.020  0.68
2012 Rodrigues ML, Pereira-Leal JB. Novel Rab GTpases Rab Gtpases and Membrane Trafficking. 155-168. DOI: 10.2174/978160805365011201010155  0.68
2011 Diekmann Y, Seixas E, Gouw M, Tavares-Cadete F, Seabra MC, Pereira-Leal JB. Thousands of rab GTPases for the cell biologist. Plos Computational Biology. 7: e1002217. PMID 22022256 DOI: 10.1371/Journal.Pcbi.1002217  0.68
2011 Su X, Qiu W, Gupta ML, Pereira-Leal JB, Reck-Peterson SL, Pellman D. Mechanisms underlying the dual-mode regulation of microtubule dynamics by Kip3/kinesin-8. Molecular Cell. 43: 751-63. PMID 21884976 DOI: 10.1016/J.Molcel.2011.06.027  0.68
2011 Carvalho-Santos Z, Azimzadeh J, Pereira-Leal JB, Bettencourt-Dias M. Evolution: Tracing the origins of centrioles, cilia, and flagella. The Journal of Cell Biology. 194: 165-75. PMID 21788366 DOI: 10.1083/Jcb.201011152  0.68
2011 Sousa FL, Alves RJ, Pereira-Leal JB, Teixeira M, Pereira MM. A bioinformatics classifier and database for heme-copper oxygen reductases. Plos One. 6: e19117. PMID 21559461 DOI: 10.1371/Journal.Pone.0019117  0.68
2011 Mendonça AG, Alves RJ, Pereira-Leal JB. Loss of genetic redundancy in reductive genome evolution. Plos Computational Biology. 7: e1001082. PMID 21379323 DOI: 10.1371/journal.pcbi.1001082  0.68
2011 Carvalho-Santos Z, Azimzadeh J, Pereira-Leal JB, Bettencourt-Dias M. Tracing the origins of centrioles, cilia, and flagella Journal of Cell Biology. 195: 341-341. DOI: 10.1083/jcb.2010111521952c  0.68
2011 Soares P, Gonçalves CP, Gomes G, Pereira-Leal JB. MAIS-TB: An integrated web tool for molecular epidemiology analysis Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6865: 183-185. DOI: 10.1007/978-3-642-23208-4_16  0.68
2010 Carvalho-Santos Z, Machado P, Branco P, Tavares-Cadete F, Rodrigues-Martins A, Pereira-Leal JB, Bettencourt-Dias M. Stepwise evolution of the centriole-assembly pathway. Journal of Cell Science. 123: 1414-26. PMID 20392737 DOI: 10.1242/Jcs.064931  0.68
2008 Levy ED, Pereira-Leal JB. Evolution and dynamics of protein interactions and networks. Current Opinion in Structural Biology. 18: 349-57. PMID 18448325 DOI: 10.1016/J.Sbi.2008.03.003  0.68
2008 Pereira-Leal JB. The Ypt/Rab family and the evolution of trafficking in fungi. Traffic (Copenhagen, Denmark). 9: 27-38. PMID 17973655 DOI: 10.1111/j.1600-0854.2007.00667.x  0.68
2007 Rasteiro R, Pereira-Leal JB. Multiple domain insertions and losses in the evolution of the Rab prenylation complex. Bmc Evolutionary Biology. 7: 140. PMID 17705859 DOI: 10.1186/1471-2148-7-140  0.68
2007 Pereira-Leal JB, Levy ED, Kamp C, Teichmann SA. Evolution of protein complexes by duplication of homomeric interactions. Genome Biology. 8: R51. PMID 17411433 DOI: 10.1186/Gb-2007-8-4-R51  0.68
2006 Levy ED, Pereira-Leal JB, Chothia C, Teichmann SA. 3D complex: a structural classification of protein complexes. Plos Computational Biology. 2: e155. PMID 17112313 DOI: 10.1371/Journal.Pcbi.0020155  0.68
2006 Pereira-Leal JB, Levy ED, Teichmann SA. The origins and evolution of functional modules: lessons from protein complexes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 507-17. PMID 16524839 DOI: 10.1098/Rstb.2005.1807  0.68
2005 Mosedale G, Niedzwiedz W, Alpi A, Perrina F, Pereira-Leal JB, Johnson M, Langevin F, Pace P, Patel KJ. The vertebrate Hef ortholog is a component of the Fanconi anemia tumor-suppressor pathway. Nature Structural & Molecular Biology. 12: 763-71. PMID 16116434 DOI: 10.1038/Nsmb981  0.68
2005 El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, ... ... Pereira-Leal JB, et al. Comparative genomics of trypanosomatid parasitic protozoa. Science (New York, N.Y.). 309: 404-9. PMID 16020724 DOI: 10.1126/Science.1112181  0.68
2005 Pereira-Leal JB, Teichmann SA. Novel specificities emerge by stepwise duplication of functional modules. Genome Research. 15: 552-9. PMID 15805495 DOI: 10.1101/Gr.3102105  0.68
2005 Vogel C, Teichmann SA, Pereira-Leal J. The relationship between domain duplication and recombination. Journal of Molecular Biology. 346: 355-65. PMID 15663950 DOI: 10.1016/J.Jmb.2004.11.050  0.68
2005 Pereira-Leal JB, Audit B, Peregrin-Alvarez JM, Ouzounis CA. An exponential core in the heart of the yeast protein interaction network. Molecular Biology and Evolution. 22: 421-5. PMID 15496552 DOI: 10.1093/Molbev/Msi024  0.68
2004 Kunin V, Pereira-Leal JB, Ouzounis CA. Functional evolution of the yeast protein interaction network. Molecular Biology and Evolution. 21: 1171-6. PMID 15071090 DOI: 10.1093/Molbev/Msh085  0.68
2004 Pereira-Leal JB, Enright AJ, Ouzounis CA. Detection of functional modules from protein interaction networks. Proteins. 54: 49-57. PMID 14705023 DOI: 10.1002/Prot.10505  0.68
2003 von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P. Genome evolution reveals biochemical networks and functional modules. Proceedings of the National Academy of Sciences of the United States of America. 100: 15428-33. PMID 14673105 DOI: 10.1073/Pnas.2136809100  0.68
2003 Ouzounis CA, Coulson RM, Enright AJ, Kunin V, Pereira-Leal JB. Classification schemes for protein structure and function. Nature Reviews. Genetics. 4: 508-19. PMID 12838343 DOI: 10.1038/Nrg1113  0.68
2003 Janssen P, Audit B, Cases I, Darzentas N, Goldovsky L, Kunin V, Lopez-Bigas N, Peregrin-Alvarez JM, Pereira-Leal JB, Tsoka S, Ouzounis CA. Beyond 100 genomes. Genome Biology. 4: 402. PMID 12734008 DOI: 10.1186/Gb-2003-4-5-402  0.68
2003 Pereira-Leal JB, Strom M, Godfrey RF, Seabra MC. Structural determinants of Rab and Rab Escort Protein interaction: Rab family motifs define a conserved binding surface. Biochemical and Biophysical Research Communications. 301: 92-7. PMID 12535645 DOI: 10.1016/S0006-291X(02)02963-7  0.68
2002 Pereira-Leal JB, Gomes AQ, Seabra MC. Analysis and preparation of stable complexes between Rab GTPases, Rab escort protein, and Rab geranylgeranyl transferase. Methods in Molecular Biology (Clifton, N.J.). 189: 157-65. PMID 12094584 DOI: 10.1385/1-59259-281-3:157  0.68
2001 Pereira-Leal JB, Seabra MC. Evolution of the Rab family of small GTP-binding proteins. Journal of Molecular Biology. 313: 889-901. PMID 11697911 DOI: 10.1006/Jmbi.2001.5072  0.68
2001 Pereira-Leal JB, Hume AN, Seabra MC. Prenylation of Rab GTPases: molecular mechanisms and involvement in genetic disease. Febs Letters. 498: 197-200. PMID 11412856 DOI: 10.1016/S0014-5793(01)02483-8  0.68
2000 Pereira-Leal JB, Seabra MC. The mammalian Rab family of small GTPases: definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily. Journal of Molecular Biology. 301: 1077-87. PMID 10966806 DOI: 10.1006/Jmbi.2000.4010  0.68
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