| Year |
Citation |
Score |
| 2019 |
Wang Q, Aleshintsev A, Bolton D, Zhuang J, Brenowitz MD, Gupta R. Ca(II) and Zn(II) cooperate to modulate the structure and self-assembly of S100A12. Biochemistry. PMID 30957488 DOI: 10.1021/Acs.Biochem.9B00123 |
0.372 |
|
| 2017 |
Warren C, Matsui T, Karp JM, Onikubo T, Cahill S, Brenowitz M, Cowburn D, Girvin M, Shechter D. Dynamic intramolecular regulation of the histone chaperone nucleoplasmin controls histone binding and release. Nature Communications. 8: 2215. PMID 29263320 DOI: 10.1038/S41467-017-02308-3 |
0.309 |
|
| 2017 |
Ghosh A, Ramagopal UA, Bonanno JB, Brenowitz MD, Almo SC. Structures of the L27 domain of Disc Large homolog 1 protein illustrate a self-assembly module. Biochemistry. PMID 29261291 DOI: 10.1021/Acs.Biochem.7B01074 |
0.319 |
|
| 2016 |
Shcherbakova DM, Baloban M, Emelyanov AV, Brenowitz M, Guo P, Verkhusha VV. Bright monomeric near-infrared fluorescent proteins as tags and biosensors for multiscale imaging. Nature Communications. 7: 12405. PMID 27539380 DOI: 10.1038/Ncomms12405 |
0.318 |
|
| 2016 |
Khrapunov S, Tao Y, Cheng H, Padlan CF, Harris R, Galanopoulou AS, Greally JM, Girvin ME, Brenowitz MD. MeCP2 binding cooperativity inhibits DNA modification specific recognition. Biochemistry. PMID 27420643 DOI: 10.1021/Acs.Biochem.6B00451 |
0.42 |
|
| 2016 |
Ralston CY, Sclavi B, Brenowitz M, Sullivan M, Chance MR. The Early Folding Intermediates of the Tetrahymena Ribozyme are Kinetically Trapped. Journal of Biomolecular Structure & Dynamics. 195-200. PMID 22607424 DOI: 10.1080/07391102.2000.10506621 |
0.42 |
|
| 2015 |
LoPiccolo J, Kim SJ, Shi Y, Wu B, Wu H, Chait BT, Singer RH, Sali A, Brenowitz M, Bresnick AR, Backer JM. Assembly and Molecular Architecture of the Phosphoinositide 3-Kinase p85α Homodimer. The Journal of Biological Chemistry. PMID 26475863 DOI: 10.1074/Jbc.M115.689604 |
0.415 |
|
| 2015 |
Shymanets A, Prajwal, Vadas O, Czupalla C, LoPiccolo J, Brenowitz M, Ghigo A, Hirsch E, Krause E, Wetzker R, Williams RL, Harteneck C, Nürnberg B. Different inhibition of Gβγ-stimulated class IB phosphoinositide 3-kinase (PI3K) variants by a monoclonal antibody. Specific function of p101 as a Gβγ-dependent regulator of PI3Kγ enzymatic activity. The Biochemical Journal. 469: 59-69. PMID 26173259 DOI: 10.1042/Bj20150099 |
0.306 |
|
| 2015 |
Leser M, Pegan J, El Makkaoui M, Schlatterer JC, Khine M, Law M, Brenowitz M. Protein footprinting by pyrite shrink-wrap laminate. Lab On a Chip. 15: 1646-50. PMID 25666234 DOI: 10.1039/C4Lc01288G |
0.359 |
|
| 2014 |
Khrapunov S, Warren C, Cheng H, Berko ER, Greally JM, Brenowitz M. Unusual characteristics of the DNA binding domain of epigenetic regulatory protein MeCP2 determine its binding specificity. Biochemistry. 53: 3379-91. PMID 24828757 DOI: 10.1021/Bi500424Z |
0.431 |
|
| 2014 |
Schlatterer JC, Martin JS, Laederach A, Brenowitz M. Mapping the kinetic barriers of a large RNA molecule's folding landscape Plos One. 9. PMID 24586236 DOI: 10.1371/Journal.Pone.0085041 |
0.412 |
|
| 2014 |
Padlan CS, Malashkevich VN, Almo SC, Levy M, Brenowitz M, Girvin ME. An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates. Rna (New York, N.Y.). 20: 447-61. PMID 24570482 DOI: 10.1261/Rna.043034.113 |
0.494 |
|
| 2014 |
Padlan C, Malashkevich V, Almo S, Levy M, Brenowitz M, Girvin M. A Novel Monovalent Cation-Stabilized Fold Mediates an Aptamer-Protein Complex Acta Crystallographica Section a Foundations and Advances. 70: C1164-C1164. DOI: 10.1107/S2053273314088354 |
0.491 |
|
| 2013 |
Ramagopal UA, Dulyaninova NG, Varney KM, Wilder PT, Nallamsetty S, Brenowitz M, Weber DJ, Almo SC, Bresnick AR. Structure of the S100A4/myosin-IIA complex. Bmc Structural Biology. 13: 31. PMID 24252706 DOI: 10.1186/1472-6807-13-31 |
0.384 |
|
| 2013 |
Chen C, Mitra S, Jonikas M, Martin J, Brenowitz M, Laederach A. Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns. Biophysical Journal. 104: 1326-37. PMID 23528092 DOI: 10.1016/J.Bpj.2013.02.007 |
0.619 |
|
| 2013 |
Ho MC, Wilczek C, Bonanno JB, Xing L, Seznec J, Matsui T, Carter LG, Onikubo T, Kumar PR, Chan MK, Brenowitz M, Cheng RH, Reimer U, Almo SC, Shechter D. Structure of the arginine methyltransferase PRMT5-MEP50 reveals a mechanism for substrate specificity. Plos One. 8: e57008. PMID 23451136 DOI: 10.1371/Journal.Pone.0057008 |
0.325 |
|
| 2013 |
Zhao C, Bachu R, Popovic M, Devany M, Brenowitz M, Schlatterer JC, Greenbaum NL. Conformational heterogeneity of the protein-free human spliceosomal U2-U6 snRNA complex. Rna (New York, N.Y.). 19: 561-73. PMID 23426875 DOI: 10.1261/Rna.038265.113 |
0.418 |
|
| 2013 |
Padlan FS, Girvin M, Brenowitz M, Levy M, Almo S, Malashkevich V. Structural Insight into Protein Recognition by RNA Aptamers Biophysical Journal. 104: 254a. DOI: 10.1016/J.Bpj.2012.11.1427 |
0.49 |
|
| 2012 |
Schlatterer JC, Wieder MS, Jones CD, Pollack L, Brenowitz M. Pyrite footprinting of RNA. Biochemical and Biophysical Research Communications. 425: 374-8. PMID 22842460 DOI: 10.1016/J.Bbrc.2012.07.100 |
0.423 |
|
| 2012 |
Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH, Chao JA. Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. Genes & Development. 26: 43-53. PMID 22215810 DOI: 10.1101/Gad.177428.111 |
0.603 |
|
| 2011 |
Bachu R, Padlan FC, Rouhanifard S, Brenowitz M, Schlatterer JC. Monitoring equilibrium changes in RNA structure by 'peroxidative' and 'oxidative' hydroxyl radical footprinting. Journal of Visualized Experiments : Jove. e3244. PMID 22025107 DOI: 10.3791/3244 |
0.443 |
|
| 2011 |
Guan R, Ho MC, Brenowitz M, Tyler PC, Evans GB, Almo SC, Schramm VL. Entropy-driven binding of picomolar transition state analogue inhibitors to human 5'-methylthioadenosine phosphorylase. Biochemistry. 50: 10408-17. PMID 21985704 DOI: 10.1021/Bi201321X |
0.387 |
|
| 2011 |
Jones CD, Schlatterer JC, Brenowitz M, Pollack L. A microfluidic device that generates hydroxyl radicals to probe the solvent accessible surface of nucleic acids. Lab On a Chip. 11: 3458-64. PMID 21863183 DOI: 10.1039/C1Lc20280D |
0.404 |
|
| 2011 |
Shea MA, Correia JJ, Brenowitz MD. Introduction: twenty five years of the Gibbs Conference on Biothermodynamics. Biophysical Chemistry. 159: 1-5. PMID 21840113 DOI: 10.1016/J.Bpc.2011.07.002 |
0.315 |
|
| 2011 |
Mitra S, Laederach A, Golden BL, Altman RB, Brenowitz M. RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. Rna (New York, N.Y.). 17: 1589-603. PMID 21712400 DOI: 10.1261/Rna.2694811 |
0.592 |
|
| 2011 |
Khrapunov S, Brenowitz M. Stability, denaturation and refolding of Mycobacterium tuberculosis MfpA, a DNA mimicking protein that confers antibiotic resistance Biophysical Chemistry. 159: 33-40. PMID 21605934 DOI: 10.1016/J.Bpc.2011.04.015 |
0.376 |
|
| 2011 |
Sen KI, Brenowitz MD, Almo SC, Gerfen GG, Bresnick AR. Regulation of Nonmuscle Myosin-IIA Filament Assembly/Disassembly Biophysical Journal. 100: 146a. DOI: 10.1016/J.Bpj.2010.12.1003 |
0.318 |
|
| 2010 |
Malashkevich VN, Dulyaninova NG, Ramagopal UA, Liriano MA, Varney KM, Knight D, Brenowitz M, Weber DJ, Almo SC, Bresnick AR. Phenothiazines inhibit S100A4 function by inducing protein oligomerization. Proceedings of the National Academy of Sciences of the United States of America. 107: 8605-10. PMID 20421509 DOI: 10.1073/Pnas.0913660107 |
0.392 |
|
| 2010 |
Khrapunov S, Cheng H, Brenowitz M. Structure and Folding Thermodynamics of MfpA, a Pentapeptide Repeat Protein From mycobacterium Tuberculosis Biophysical Journal. 98: 29a. DOI: 10.1016/J.Bpj.2009.12.170 |
0.376 |
|
| 2009 |
Zhan C, Yan Q, Patskovsky Y, Li Z, Toro R, Meyer A, Cheng H, Brenowitz M, Nathenson SG, Almo SC. Biochemical and structural characterization of the human TL1A ectodomain. Biochemistry. 48: 7636-45. PMID 19522538 DOI: 10.1021/Bi900031W |
0.337 |
|
| 2009 |
Schlatterer JC, Brenowitz M. Complementing global measures of RNA folding with local reports of backbone solvent accessibility by time resolved hydroxyl radical footprinting. Methods. 49: 142-147. PMID 19426806 DOI: 10.1016/J.Ymeth.2009.04.019 |
0.417 |
|
| 2009 |
Blakaj DM, Fernandez-Fuentes N, Chen Z, Hegde R, Fiser A, Burk RD, Brenowitz M. Evolutionary and biophysical relationships among the papillomavirus E2 proteins. Frontiers in Bioscience (Landmark Edition). 14: 900-17. PMID 19273107 DOI: 10.2741/3285 |
0.608 |
|
| 2009 |
Martin JS, Schlatterer J, Brenowitz M, Laederach A. Identifying Energy Barriers in RNA Folding Through Kinetic Model Enumeration Biophysical Journal. 96: 9a. DOI: 10.1016/J.Bpj.2008.12.943 |
0.414 |
|
| 2008 |
Khrapunov S, Cheng H, Hegde S, Blanchard J, Brenowitz M. Solution structure and refolding of the Mycobacterium tuberculosis pentapeptide repeat protein MfpA Journal of Biological Chemistry. 283: 36290-36299. PMID 18977756 DOI: 10.1074/Jbc.M804702200 |
0.409 |
|
| 2008 |
Shcherbakova I, Mitra S, Laederach A, Brenowitz M. Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs. Current Opinion in Chemical Biology. 12: 655-66. PMID 18926923 DOI: 10.1016/J.Cbpa.2008.09.017 |
0.596 |
|
| 2008 |
Sprouse RO, Shcherbakova I, Cheng H, Jamison E, Brenowitz M, Auble DT. Function and structural organization of Mot1 bound to a natural target promoter. The Journal of Biological Chemistry. 283: 24935-48. PMID 18606810 DOI: 10.1074/Jbc.M803749200 |
0.369 |
|
| 2008 |
Mitra S, Shcherbakova IV, Altman RB, Brenowitz M, Laederach A. High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis. Nucleic Acids Research. 36: e63. PMID 18477638 DOI: 10.1093/Nar/Gkn267 |
0.589 |
|
| 2008 |
Schlatterer JC, Kwok LW, Lamb JS, Park HY, Andresen K, Brenowitz M, Pollack L. Hinge stiffness is a barrier to RNA folding. Journal of Molecular Biology. 379: 859-70. PMID 18471829 DOI: 10.1016/J.Jmb.2008.04.013 |
0.361 |
|
| 2008 |
Shcherbakova I, Brenowitz M. Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting. Nature Protocols. 3: 288-302. PMID 18274531 DOI: 10.1038/Nprot.2007.533 |
0.435 |
|
| 2008 |
Chattopadhyay K, Ramagopal UA, Brenowitz M, Nathenson SG, Almo SC. Evolution of GITRL immune function: murine GITRL exhibits unique structural and biochemical properties within the TNF superfamily. Proceedings of the National Academy of Sciences of the United States of America. 105: 635-40. PMID 18182486 DOI: 10.1073/Pnas.0710529105 |
0.331 |
|
| 2008 |
Shcherbakova I, Mitra S, Beer RH, Brenowitz M. Following molecular transitions with single residue spatial and millisecond time resolution. Methods in Cell Biology. 84: 589-615. PMID 17964944 DOI: 10.1016/S0091-679X(07)84019-2 |
0.637 |
|
| 2007 |
Chattopadhyay K, Ramagopal UA, Mukhopadhaya A, Malashkevich VN, Dilorenzo TP, Brenowitz M, Nathenson SG, Almo SC. Assembly and structural properties of glucocorticoid-induced TNF receptor ligand: Implications for function. Proceedings of the National Academy of Sciences of the United States of America. 104: 19452-7. PMID 18040044 DOI: 10.1073/Pnas.0709264104 |
0.326 |
|
| 2007 |
Gupta S, Cheng H, Mollah AK, Jamison E, Morris S, Chance MR, Khrapunov S, Brenowitz M. DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein. Biochemistry. 46: 9886-98. PMID 17683121 DOI: 10.1021/Bi7003608 |
0.334 |
|
| 2007 |
Laederach A, Shcherbakova I, Jonikas MA, Altman RB, Brenowitz M. Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding Proceedings of the National Academy of Sciences of the United States of America. 104: 7045-7050. PMID 17438287 DOI: 10.1073/Pnas.0608765104 |
0.333 |
|
| 2007 |
Khrapunov S, Brenowitz M. Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding protein. Biochemistry. 46: 4876-4887. PMID 17378582 DOI: 10.1021/Bi061651W |
0.425 |
|
| 2006 |
Khrapunov S, Brenowitz M, Rice PA, Catalano CE. Binding then bending: a mechanism for wrapping DNA. Proceedings of the National Academy of Sciences of the United States of America. 103: 19217-8. PMID 17159146 DOI: 10.1073/Pnas.0609223103 |
0.406 |
|
| 2006 |
Nguyenle T, Laurberg M, Brenowitz M, Noller HF. Following the Dynamics of Changes in Solvent Accessibility of 16 S and 23 S rRNA During Ribosomal Subunit Association Using Synchrotron-generated Hydroxyl Radicals Journal of Molecular Biology. 359: 1235-1248. PMID 16725154 DOI: 10.1016/J.Jmb.2006.04.030 |
0.381 |
|
| 2006 |
Shcherbakova I, Mitra S, Beer RH, Brenowitz M. Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins. Nucleic Acids Research. 34: e48. PMID 16582097 DOI: 10.1093/Nar/Gkl055 |
0.641 |
|
| 2006 |
Laederach A, Shcherbakova I, Liang MP, Brenowitz M, Altman RB. Local Kinetic Measures of Macromolecular Structure Reveal Partitioning among Multiple Parallel Pathways from the Earliest Steps in the Folding of a Large RNA Molecule Journal of Molecular Biology. 358: 1179-1190. PMID 16574145 DOI: 10.1016/J.Jmb.2006.02.075 |
0.416 |
|
| 2006 |
Sprouse RO, Brenowitz M, Auble DT. Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNA. The Embo Journal. 25: 1492-504. PMID 16541100 DOI: 10.1038/Sj.Emboj.7601050 |
0.383 |
|
| 2006 |
Blakaj DM, Kattamuri C, Khrapunov S, Hegde RS, Brenowitz M. Indirect readout of DNA sequence by papillomavirus E2 proteins depends upon net cation uptake. Journal of Molecular Biology. 358: 224-40. PMID 16513133 DOI: 10.1016/J.Jmb.2006.01.093 |
0.61 |
|
| 2006 |
Kwok LW, Shcherbakova I, Lamb JS, Park HY, Andresen K, Smith H, Brenowitz M, Pollack L. Concordant exploration of the kinetics of RNA folding from global and local perspectives. Journal of Molecular Biology. 355: 282-93. PMID 16303138 DOI: 10.1016/J.Jmb.2005.10.070 |
0.413 |
|
| 2005 |
Shcherbakova I, Brenowitz M. Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure. Journal of Molecular Biology. 354: 483-96. PMID 16242711 DOI: 10.1016/J.Jmb.2005.09.032 |
0.409 |
|
| 2005 |
Brenowitz M, Erie DA, Chance MR. Catching RNA polymerase in the act of binding: intermediates in transcription illuminated by synchrotron footprinting. Proceedings of the National Academy of Sciences of the United States of America. 102: 4659-60. PMID 15781859 DOI: 10.1073/Pnas.0501152102 |
0.334 |
|
| 2004 |
Takamoto K, Das R, He Q, Doniach S, Brenowitz M, Herschlag D, Chance MR. Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations. Journal of Molecular Biology. 343: 1195-206. PMID 15491606 DOI: 10.1016/J.Jmb.2004.08.080 |
0.395 |
|
| 2004 |
Shcherbakova I, Gupta S, Chance MR, Brenowitz M. Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme. Journal of Molecular Biology. 342: 1431-42. PMID 15364572 DOI: 10.1016/J.Jmb.2004.07.092 |
0.345 |
|
| 2004 |
Khrapunov S, Brenowitz M. Comparison of the Effect of Water Release on the Interaction of the Saccharomyces cerevisiae TATA Binding Protein (TBP) with “TATA Box” Sequences Composed of Adenosine or Inosine Biophysical Journal. 86: 371-383. PMID 14695279 DOI: 10.1016/S0006-3495(04)74113-2 |
0.421 |
|
| 2004 |
Morris S, Ahmad N, Andre S, Kaltner H, Gabius HJ, Brenowitz M, Brewer F. Quaternary solution structures of galectins-1, -3, and -7 Glycobiology. 14: 293-300. PMID 14693909 DOI: 10.1093/Glycob/Cwh029 |
0.38 |
|
| 2003 |
Su LJ, Brenowitz M, Pyle AM. An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme. Journal of Molecular Biology. 334: 639-52. PMID 14636593 DOI: 10.1016/J.Jmb.2003.09.071 |
0.419 |
|
| 2003 |
Uchida T, Takamoto K, He Q, Chance MR, Brenowitz M. Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme. Journal of Molecular Biology. 328: 463-78. PMID 12691754 DOI: 10.1016/S0022-2836(03)00247-X |
0.37 |
|
| 2003 |
Rashidzadeh H, Khrapunov S, Chance MR, Brenowitz M. Solution structure and interdomain interactions of the Saccharomyces cerevisiae "TATA binding protein" (TBP) probed by radiolytic protein footprinting. Biochemistry. 42: 3655-65. PMID 12667055 DOI: 10.1021/Bi027203F |
0.315 |
|
| 2003 |
Brenowitz M, Chance MR, Dhavan G, Takamoto K. Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting". Current Opinion in Structural Biology. 12: 648-53. PMID 12464318 DOI: 10.1016/S0959-440X(02)00366-4 |
0.367 |
|
| 2002 |
Takamoto K, He Q, Morris S, Chance MR, Brenowitz M. Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme. Nature Structural Biology. 9: 928-33. PMID 12434149 DOI: 10.1038/Nsb871 |
0.366 |
|
| 2002 |
Khrapunov S, Pastor N, Brenowitz M. Solution structural studies of the Saccharomyces cerevisiae TATA binding protein (TBP). Biochemistry. 41: 9559-9571. PMID 12135378 DOI: 10.1021/Bi0255773 |
0.41 |
|
| 2002 |
Dhavan GM, Crothers DM, Chance MR, Brenowitz M. Concerted binding and bending of DNA by Escherichia coli integration host factor. Journal of Molecular Biology. 315: 1027-37. PMID 11827473 DOI: 10.1006/Jmbi.2001.5303 |
0.426 |
|
| 2002 |
Swisher JF, Su LJ, Brenowitz M, Anderson VE, Pyle AM. Productive folding to the native state by a group II intron ribozyme. Journal of Molecular Biology. 315: 297-310. PMID 11786013 DOI: 10.1006/Jmbi.2001.5233 |
0.396 |
|
| 2001 |
Woodson SA, Deras ML, Brenowitz M. Time-resolved hydroxyl radical footprinting of RNA with X-rays. Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. Unit 11.6. PMID 18428832 DOI: 10.1002/0471142700.Nc1106S06 |
0.379 |
|
| 2001 |
Brenowitz M, Senear DF, Kingston RE. DNase I footprint analysis of protein-DNA binding. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 12.4. PMID 18265087 DOI: 10.1002/0471142727.Mb1204S07 |
0.424 |
|
| 2001 |
Cloutier TE, Librizzi MD, Mollah AK, Brenowitz M, Willis IM. Kinetic trapping of DNA by transcription factor IIIB. Proceedings of the National Academy of Sciences of the United States of America. 98: 9581-6. PMID 11481428 DOI: 10.1073/Pnas.161292298 |
0.405 |
|
| 2001 |
Powell RM, Parkhurst KM, Brenowitz M, Parkhurst LJ. Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters. The Journal of Biological Chemistry. 276: 29782-91. PMID 11387341 DOI: 10.1074/Jbc.M104099200 |
0.376 |
|
| 2001 |
Wu J, Parkhurst KM, Powell RM, Brenowitz M, Parkhurst LJ. DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent. The Journal of Biological Chemistry. 276: 14614-22. PMID 11278276 DOI: 10.1074/Jbc.M004402200 |
0.306 |
|
| 2001 |
Maleknia SD, Ralston CY, Brenowitz MD, Downard KM, Chance MR. Determination of macromolecular folding and structure by synchrotron X-ray radiolysis techniques Analytical Biochemistry. 289: 103-115. PMID 11161303 DOI: 10.1006/Abio.2000.4910 |
0.399 |
|
| 2000 |
Pastor N, Weinstein H, Jamison E, Brenowitz M. A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding. Journal of Molecular Biology. 304: 55-68. PMID 11071810 DOI: 10.1006/Jmbi.2000.4173 |
0.407 |
|
| 2000 |
Ralston CY, Sclavi B, Sullivan M, Deras ML, Woodson SA, Chance MR, Brenowitz M. Time-resolved synchrotron X-ray footprinting and its application to RNA folding. Methods in Enzymology. 317: 353-68. PMID 10829290 DOI: 10.1016/S0076-6879(00)17024-7 |
0.312 |
|
| 2000 |
Ralston CY, He Q, Brenowitz M, Chance MR. Stability and cooperativity of individual tertiary contacts in RNA revealed through chemical denaturation. Nature Structural Biology. 7: 371-4. PMID 10802732 DOI: 10.1038/75139 |
0.418 |
|
| 2000 |
Daugherty MA, Brenowitz M, Fried MG. Participation of the amino-terminal domain in the self-association of the full-length yeast TATA binding protein. Biochemistry. 39: 4869-80. PMID 10769145 DOI: 10.1021/Bi992423N |
0.431 |
|
| 1999 |
Parkhurst KM, Richards RM, Brenowitz M, Parkhurst LJ. Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex. Journal of Molecular Biology. 289: 1327-41. PMID 10373370 DOI: 10.1006/Jmbi.1999.2835 |
0.438 |
|
| 1999 |
Daugherty MA, Brenowitz M, Fried MG. The TATA-binding protein from Saccharomyces cerevisiae oligomerizes in solution at micromolar concentrations to form tetramers and octamers. Journal of Molecular Biology. 285: 1389-99. PMID 9917384 DOI: 10.1006/Jmbi.1998.2427 |
0.371 |
|
| 1998 |
Petri V, Hsieh M, Jamison E, Brenowitz MD. DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding. Biochemistry. 37: 15842-15849. PMID 9843390 DOI: 10.1021/Bi981072U |
0.402 |
|
| 1998 |
Sclavi B, Woodson S, Sullivan M, Chance M, Brenowitz M. Following the folding of RNA with time-resolved synchrotron X-ray footprinting. Methods in Enzymology. 295: 379-402. PMID 9750229 DOI: 10.1016/S0076-6879(98)95050-9 |
0.358 |
|
| 1998 |
Hines CS, Meghoo C, Shetty S, Biburger M, Brenowitz M, Hegde RS. DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins Journal of Molecular Biology. 276: 809-818. PMID 9500925 DOI: 10.1006/Jmbi.1997.1578 |
0.419 |
|
| 1998 |
Librizzi MD, Brenowitz M, Willis IM. The TATA element and its context affect the cooperative interaction of TATA-binding protein with the TFIIB-related factor, TFIIIB70 Journal of Biological Chemistry. 273: 4563-4568. PMID 9468512 DOI: 10.1074/Jbc.273.8.4563 |
0.417 |
|
| 1997 |
Hsieh M, Brenowitz M. Comparison of the DNA association kinetics of the Lacy repressor tetramet, its dimeric mutant LacI(adi), and the native dimeric gal repressor Journal of Biological Chemistry. 272: 22092-22096. PMID 9268351 DOI: 10.1074/Jbc.272.35.22092 |
0.399 |
|
| 1997 |
Sclavi B, Woodson S, Sullivan M, Chance MR, Brenowitz M. Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding. Journal of Molecular Biology. 266: 144-59. PMID 9054977 DOI: 10.1006/Jmbi.1996.0775 |
0.326 |
|
| 1997 |
Petri V, Brenowitz M. Quantitative nucleic acids footprinting: Thermodynamic and kinetic approaches Current Opinion in Biotechnology. 8: 36-44. PMID 9013649 DOI: 10.1016/S0958-1669(97)80155-3 |
0.311 |
|
| 1996 |
Librizzi MD, Moir RD, Brenowitz M, Willis IM. Expression and purification of the RNA polymerase III transcription specificity factor IIIB70 from Saccharomyces cerevisiae and its cooperative binding with TATA-binding protein Journal of Biological Chemistry. 271: 32695-32701. PMID 8955101 DOI: 10.1074/Jbc.271.51.32695 |
0.464 |
|
| 1996 |
Hsieh M, Brenowitz M. Quantitative kinetics footprinting of protein-DNA association reactions Methods in Enzymology. 274: 478-492. PMID 8902826 DOI: 10.1016/S0076-6879(96)74038-7 |
0.395 |
|
| 1996 |
Dalma-Weiszhausz DD, Brenowitz M. Interactions between RNA Polymerase and the Positive and Negative Regulators of Transcription at the Escherichia coli gal Operon Biochemistry. 35: 3735-3745. PMID 8619994 DOI: 10.1021/Bi952408S |
0.398 |
|
| 1995 |
Krishnamurthy G, Brenowitz MD, Ellestad GA. Salt dependence of calicheamicin-DNA site-specific interactions. Biochemistry. 34: 1001-1010. PMID 7827016 DOI: 10.1021/Bi00003A035 |
0.399 |
|
| 1995 |
Petri V, Hsieh M, Brenowitz M. Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter. Biochemistry. 34: 9977-9984. PMID 7632696 DOI: 10.1021/Bi00031A020 |
0.387 |
|
| 1994 |
Strahs D, Brenowitz M. DNA Conformational Changes Associated with the Cooperative Binding of cI-repressor of Bacteriophage λ to OR Journal of Molecular Biology. 244: 494-510. PMID 7990137 DOI: 10.1006/Jmbi.1994.1748 |
0.411 |
|
| 1993 |
Senear DF, Dalma-Weiszhausz DD, Brenowitz M. Effects of anomalous migration and DNA to protein ratios on resolution of equilibrium constants from gel mobility-shift assays. Electrophoresis. 14: 704-12. PMID 8404813 DOI: 10.1002/Elps.11501401112 |
0.419 |
|
| 1993 |
King PA, Jamison E, Strahs D, Anderson VE, Brenowitz M. 'Footprinting' proteins on DNA with peroxonitrous acid Nucleic Acids Research. 21: 2473-2478. PMID 8389444 DOI: 10.1093/Nar/21.10.2473 |
0.386 |
|
| 1993 |
Brenowitz M, Jamison E. Modulation of the stability of a Lac repressor mediated looped complex by temperature and ions: Allosteric regulation by chloride Biochemistry. 32: 8693-8701. PMID 8357811 DOI: 10.1021/Bi00084A041 |
0.398 |
|
| 1992 |
Dalma-Weiszhausz DD, Brenowitz M. Interactions between DNA-bound transcriptional regulators of the Escherichia coli gal operon Biochemistry. 31: 6980-6989. PMID 1637832 DOI: 10.1021/Bi00145A016 |
0.438 |
|
| 1991 |
Brenowitz M, Pickar A, Jamison E. Stability of a Lac repressor mediated "looped complex". Biochemistry. 30: 5986-5998. PMID 2043636 DOI: 10.1021/Bi00238A024 |
0.433 |
|
| 1990 |
Brenowitz M, Jamison E, Majumdar A, Adhya S. Interaction of the Escherichia coli gal repressor protein with its DNA operators in vitro Biochemistry. 29: 3374-3383. PMID 2185837 DOI: 10.1021/Bi00465A033 |
0.411 |
|
| 1986 |
Brenowitz M, Senear DF, Shea MA, Ackers GK. Quantitative DNase footprint titration: a method for studying protein-DNA interactions. Methods in Enzymology. 130: 132-81. PMID 3773731 DOI: 10.1016/0076-6879(86)30011-9 |
0.386 |
|
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