| Year |
Citation |
Score |
| 2020 |
Liu J, Frochaux M, Gardeux V, Deplancke B, Robinson-Rechavi M. Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo. Bmc Biology. 18: 129. PMID 32950053 DOI: 10.1186/S12915-020-00842-Z |
0.349 |
|
| 2020 |
Turelli P, Playfoot C, Grun D, Raclot C, Pontis J, Coudray A, Thorball C, Duc J, Pankevich EV, Deplancke B, Busskamp V, Trono D. Primate-restricted KRAB zinc finger proteins and target retrotransposons control gene expression in human neurons. Science Advances. 6: eaba3200. PMID 32923624 DOI: 10.1126/Sciadv.Aba3200 |
0.341 |
|
| 2020 |
Dainese R, Gardeux V, Llimos G, Alpern D, Jiang JY, Meireles-Filho ACA, Deplancke B. A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 32461370 DOI: 10.1073/Pnas.1913261117 |
0.381 |
|
| 2020 |
Bou Sleiman M, Frochaux MV, Andreani T, Osman D, Guigo R, Deplancke B. Enteric infection induces Lark-mediated intron retention at the 5' end of Drosophila genes. Genome Biology. 21: 4. PMID 31948480 DOI: 10.1186/S13059-019-1918-6 |
0.358 |
|
| 2019 |
Li Y, Schwalie PC, Bast-Habersbrunner A, Mocek S, Russeil J, Fromme T, Deplancke B, Klingenspor M. Systems-Genetics-Based Inference of a Core Regulatory Network Underlying White Fat Browning. Cell Reports. 29: 4099-4113.e5. PMID 31851936 DOI: 10.1016/J.Celrep.2019.11.053 |
0.364 |
|
| 2019 |
Friman ET, Deluz C, Meireles-Filho AC, Govindan S, Gardeux V, Deplancke B, Suter DM. Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle. Elife. 8. PMID 31794382 DOI: 10.7554/Elife.50087 |
0.383 |
|
| 2019 |
Okada H, Yagi R, Gardeux V, Deplancke B, Hafen E. Sex-dependent and sex-independent regulatory systems of size variation in natural populations. Molecular Systems Biology. 15: e9012. PMID 31777173 DOI: 10.15252/Msb.20199012 |
0.316 |
|
| 2019 |
Fritsch C, Bernardo-Garcia FJ, Humberg TH, Mishra AK, Miellet S, Almeida S, Frochaux MV, Deplancke B, Huber A, Sprecher SG. Multilevel regulation of the glass locus during Drosophila eye development. Plos Genetics. 15: e1008269. PMID 31299050 DOI: 10.1371/Journal.Pgen.1008269 |
0.379 |
|
| 2019 |
Chen W, Schwalie PC, Pankevich EV, Gubelmann C, Raghav SK, Dainese R, Cassano M, Imbeault M, Jang SM, Russeil J, Delessa T, Duc J, Trono D, Wolfrum C, Deplancke B. ZFP30 promotes adipogenesis through the KAP1-mediated activation of a retrotransposon-derived Pparg2 enhancer. Nature Communications. 10: 1809. PMID 31000713 DOI: 10.1038/S41467-019-09803-9 |
0.41 |
|
| 2019 |
Alpern D, Gardeux V, Russeil J, Mangeat B, Meireles-Filho ACA, Breysse R, Hacker D, Deplancke B. BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing. Genome Biology. 20: 71. PMID 30999927 DOI: 10.1186/S13059-019-1671-X |
0.314 |
|
| 2019 |
Shokri L, Inukai S, Hafner A, Weinand K, Hens K, Vedenko A, Gisselbrecht SS, Dainese R, Bischof J, Furger E, Feuz JD, Basler K, Deplancke B, Bulyk ML. A Comprehensive Drosophila melanogaster Transcription Factor Interactome. Cell Reports. 27: 955-970.e7. PMID 30995488 DOI: 10.1016/J.Celrep.2019.03.071 |
0.429 |
|
| 2019 |
Friman ET, Deluz C, Meireles-Filho AC, Govindan S, Gardeux V, Deplancke B, Suter DM. Author response: Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle Elife. DOI: 10.7554/Elife.50087.Sa2 |
0.347 |
|
| 2018 |
Schwalie PC, Dong H, Zachara M, Russeil J, Alpern D, Akchiche N, Caprara C, Sun W, Schlaudraff KU, Soldati G, Wolfrum C, Deplancke B. A stromal cell population that inhibits adipogenesis in mammalian fat depots. Nature. PMID 29925944 DOI: 10.1038/S41586-018-0226-8 |
0.331 |
|
| 2018 |
Deplancke B. Decision letter: The Hox transcription factor Ubx stabilizes lineage commitment by suppressing cellular plasticity in Drosophila Elife. DOI: 10.7554/Elife.42675.033 |
0.306 |
|
| 2017 |
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/Elife.27041 |
0.319 |
|
| 2017 |
Delachat AM, Guidotti N, Bachmann AL, Meireles-Filho ACA, Pick H, Lechner CC, Deluz C, Deplancke B, Suter DM, Fierz B. Engineered Multivalent Sensors to Detect Coexisting Histone Modifications in Living Stem Cells. Cell Chemical Biology. PMID 29174541 DOI: 10.1016/J.Chembiol.2017.10.008 |
0.338 |
|
| 2017 |
Houtz P, Bonfini A, Liu X, Revah J, Guillou A, Poidevin M, Hens K, Huang HY, Deplancke B, Tsai YC, Buchon N. Hippo, TGF-β, and Src-MAPK pathways regulate transcription of the upd3 cytokine in Drosophila enterocytes upon bacterial infection. Plos Genetics. 13: e1007091. PMID 29108021 DOI: 10.1371/Journal.Pgen.1007091 |
0.395 |
|
| 2017 |
Schwalie PC, Ordonez Moran P, Huelsken J, Deplancke B. Cross-Tissue Identification Of Somatic Stem And Progenitor Cells Using A Single-Cell RNA-Seq Derived Gene Signature. Stem Cells (Dayton, Ohio). PMID 29044933 DOI: 10.1002/Stem.2719 |
0.343 |
|
| 2017 |
Chen W, Gardeux V, Meireles-Filho A, Deplancke B. Profiling of Single-Cell Transcriptomes. Current Protocols in Mouse Biology. 7: 145-175. PMID 28884792 DOI: 10.1002/Cpmo.30 |
0.332 |
|
| 2017 |
McDaid AF, Joshi PK, Porcu E, Komljenovic A, Li H, Sorrentino V, Litovchenko M, Bevers RPJ, Rüeger S, Reymond A, Bochud M, Deplancke B, Williams RW, Robinson-Rechavi M, Paccaud F, et al. Bayesian association scan reveals loci associated with human lifespan and linked biomarkers. Nature Communications. 8: 15842. PMID 28748955 DOI: 10.1038/Ncomms15842 |
0.312 |
|
| 2017 |
Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F, et al. Transcriptional regulatory logic of the diurnal cycle in the mouse liver. Plos Biology. 15: e2001069. PMID 28414715 DOI: 10.1371/Journal.Pbio.2001069 |
0.362 |
|
| 2017 |
Mojica-Vázquez LH, Benetah MH, Baanannou A, Bernat-Fabre S, Deplancke B, Cribbs DL, Bourbon HM, Boube M. Tissue-specific enhancer repression through molecular integration of cell signaling inputs. Plos Genetics. 13: e1006718. PMID 28394894 DOI: 10.1371/Journal.Pgen.1006718 |
0.439 |
|
| 2017 |
Mendoza-García P, Hugosson F, Fallah M, Higgins ML, Iwasaki Y, Pfeifer K, Wolfstetter G, Varshney G, Popichenko D, Gergen JP, Hens K, Deplancke B, Palmer RH. The Zic family homologue Odd-paired regulates Alk expression in Drosophila. Plos Genetics. 13: e1006617. PMID 28369060 DOI: 10.1371/Journal.Pgen.1006617 |
0.4 |
|
| 2017 |
Pradhan RN, Bues JJ, Gardeux V, Schwalie PC, Alpern D, Chen W, Russeil J, Raghav SK, Deplancke B. Dissecting the brown adipogenic regulatory network using integrative genomics. Scientific Reports. 7: 42130. PMID 28181539 DOI: 10.1038/Srep42130 |
0.436 |
|
| 2017 |
Pradhan RN, Zachara M, Deplancke B. A systems perspective on brown adipogenesis and metabolic activation. Obesity Reviews : An Official Journal of the International Association For the Study of Obesity. 18: 65-81. PMID 28164456 DOI: 10.1111/Obr.12512 |
0.331 |
|
| 2017 |
Grossman SR, Zhang X, Wang L, Engreitz J, Melnikov A, Rogov P, Tewhey R, Isakova A, Deplancke B, Bernstein BE, Mikkelsen TS, Lander ES. Systematic dissection of genomic features determining transcription factor binding and enhancer function. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137873 DOI: 10.1073/Pnas.1621150114 |
0.371 |
|
| 2017 |
Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nature Methods. PMID 28092692 DOI: 10.1038/Nmeth.4143 |
0.373 |
|
| 2017 |
David FP, Rougemont J, Deplancke B. GETPrime 2.0: gene- and transcript-specific qPCR primers for 13 species including polymorphisms. Nucleic Acids Research. 45: D56-D60. PMID 28053161 DOI: 10.1093/Nar/Gkw913 |
0.363 |
|
| 2016 |
Meireles-Filho AC, Deplancke B. Gene regulatory mechanisms underlying the intestinal innate immune response. Current Opinion in Genetics & Development. 43: 46-52. PMID 28011293 DOI: 10.1016/J.Gde.2016.11.004 |
0.406 |
|
| 2016 |
Simicevic J, Deplancke B. Transcription factor proteomics - tools, applications, and challenges. Proteomics. PMID 27860250 DOI: 10.1002/Pmic.201600317 |
0.424 |
|
| 2016 |
Mezan S, Feuz JD, Deplancke B, Kadener S. PDF Signaling Is an Integral Part of the Drosophila Circadian Molecular Oscillator. Cell Reports. 17: 708-719. PMID 27732848 DOI: 10.1016/J.Celrep.2016.09.048 |
0.333 |
|
| 2016 |
Deplancke B, Alpern D, Gardeux V. The Genetics of Transcription Factor DNA Binding Variation. Cell. 166: 538-54. PMID 27471964 DOI: 10.1016/J.Cell.2016.07.012 |
0.352 |
|
| 2016 |
Loviglio MN, Leleu M, Männik K, Passeggeri M, Giannuzzi G, van der Werf I, Waszak SM, Zazhytska M, Roberts-Caldeira I, Gheldof N, Migliavacca E, Alfaiz AA, Hippolyte L, Maillard AM, ... ... Deplancke B, et al. Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypes. Molecular Psychiatry. PMID 27240531 DOI: 10.1038/Mp.2016.84 |
0.342 |
|
| 2016 |
Isakova A, Berset Y, Hatzimanikatis V, Deplancke B. Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity Models. The Journal of Biological Chemistry. 291: 10293-306. PMID 26912662 DOI: 10.1074/Jbc.M115.691154 |
0.332 |
|
| 2015 |
Waszak SM, Delaneau O, Gschwind AR, Kilpinen H, Raghav SK, Witwicki RM, Orioli A, Wiederkehr M, Panousis NI, Yurovsky A, Romano-Palumbo L, Planchon A, Bielser D, Padioleau I, Udin G, ... ... Deplancke B, et al. Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. Cell. 162: 1039-50. PMID 26300124 DOI: 10.1016/J.Cell.2015.08.001 |
0.371 |
|
| 2015 |
Bou Sleiman MS, Osman D, Massouras A, Hoffmann AA, Lemaitre B, Deplancke B. Genetic, molecular and physiological basis of variation in Drosophila gut immunocompetence. Nature Communications. 6: 7829. PMID 26213329 DOI: 10.1038/Ncomms8829 |
0.344 |
|
| 2015 |
Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife. 4. PMID 25779349 DOI: 10.7554/Elife.04837 |
0.383 |
|
| 2015 |
Moullan N, Mouchiroud L, Wang X, Ryu D, Williams EG, Mottis A, Jovaisaite V, Frochaux MV, Quiros PM, Deplancke B, Houtkooper RH, Auwerx J. Tetracyclines Disturb Mitochondrial Function across Eukaryotic Models: A Call for Caution in Biomedical Research. Cell Reports. PMID 25772356 DOI: 10.1016/J.Celrep.2015.02.034 |
0.308 |
|
| 2015 |
Schertel C, Albarca M, Rockel-Bauer C, Kelley NW, Bischof J, Hens K, van Nimwegen E, Basler K, Deplancke B. A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development. Genome Research. 25: 514-23. PMID 25568052 DOI: 10.1101/Gr.181305.114 |
0.451 |
|
| 2015 |
Simicevic J, Moniatte M, Hamelin R, Ahrné E, Deplancke B. A mammalian transcription factor-specific peptide repository for targeted proteomics. Proteomics. 15: 752-6. PMID 25407602 DOI: 10.1002/Pmic.201400355 |
0.32 |
|
| 2015 |
Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EEM, Taipale J. Author response: Conservation of transcription factor binding specificities across 600 million years of bilateria evolution Elife. DOI: 10.7554/Elife.04837.037 |
0.331 |
|
| 2014 |
Williams EG, Mouchiroud L, Frochaux M, Pandey A, Andreux PA, Deplancke B, Auwerx J. An evolutionarily conserved role for the aryl hydrocarbon receptor in the regulation of movement. Plos Genetics. 10: e1004673. PMID 25255223 DOI: 10.1371/Journal.Pgen.1004673 |
0.345 |
|
| 2014 |
Gubelmann C, Schwalie PC, Raghav SK, Röder E, Delessa T, Kiehlmann E, Waszak SM, Corsinotti A, Udin G, Holcombe W, Rudofsky G, Trono D, Wolfrum C, Deplancke B. Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network. Elife. 3: e03346. PMID 25163748 DOI: 10.7554/Elife.03346 |
0.451 |
|
| 2014 |
Bonhoure N, Bounova G, Bernasconi D, Praz V, Lammers F, Canella D, Willis IM, Herr W, Hernandez N, Delorenzi M, Deplancke B, Desvergne B, Guex N, Naef F, Rougemont J, et al. Quantifying ChIP-seq data: A spiking method providing an internal reference for sample-to-sample normalization Genome Research. 24: 1157-1168. PMID 24709819 DOI: 10.1101/Gr.168260.113 |
0.327 |
|
| 2014 |
Gubelmann C, Schwalie PC, Raghav SK, Röder E, Delessa T, Kiehlmann E, Waszak SM, Corsinotti A, Udin G, Holcombe W, Rudofsky G, Trono D, Wolfrum C, Deplancke B. Author response: Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network Elife. DOI: 10.7554/Elife.03346.020 |
0.375 |
|
| 2013 |
Waszak SM, Deplancke B. Rounding up natural gene expression variation during development. Developmental Cell. 27: 601-3. PMID 24369832 DOI: 10.1016/J.Devcel.2013.12.007 |
0.375 |
|
| 2013 |
Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, ... ... Deplancke B, et al. Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription. Science (New York, N.Y.). 342: 744-7. PMID 24136355 DOI: 10.1126/Science.1242463 |
0.411 |
|
| 2013 |
Gubelmann C, Waszak SM, Isakova A, Holcombe W, Hens K, Iagovitina A, Feuz JD, Raghav SK, Simicevic J, Deplancke B. A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks. Molecular Systems Biology. 9: 682. PMID 23917988 DOI: 10.1038/Msb.2013.38 |
0.445 |
|
| 2013 |
Kim Y, Iagovitina A, Ishihara K, Fitzgerald KM, Deplancke B, Papatsenko D, Shvartsman SY. Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo. Chaos (Woodbury, N.Y.). 23: 025105. PMID 23822503 DOI: 10.1063/1.4808157 |
0.372 |
|
| 2013 |
Buchon N, Osman D, David FP, Fang HY, Boquete JP, Deplancke B, Lemaitre B. Morphological and molecular characterization of adult midgut compartmentalization in Drosophila. Cell Reports. 3: 1725-38. PMID 23643535 DOI: 10.1016/J.CELREP.2013.05.019 |
0.34 |
|
| 2013 |
Simicevic J, Schmid AW, Gilardoni PA, Zoller B, Raghav SK, Krier I, Gubelmann C, Lisacek F, Naef F, Moniatte M, Deplancke B. Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nature Methods. 10: 570-6. PMID 23584187 DOI: 10.1038/Nmeth.2441 |
0.415 |
|
| 2013 |
Ritter AD, Shen Y, Fuxman Bass J, Jeyaraj S, Deplancke B, Mukhopadhyay A, Xu J, Driscoll M, Tissenbaum HA, Walhout AJ. Complex expression dynamics and robustness in C. elegans insulin networks. Genome Research. 23: 954-65. PMID 23539137 DOI: 10.1101/Gr.150466.112 |
0.735 |
|
| 2013 |
Corsinotti A, Kapopoulou A, Gubelmann C, Imbeault M, Santoni de Sio FR, Rowe HM, Mouscaz Y, Deplancke B, Trono D. Global and stage specific patterns of Krüppel-associated-box zinc finger protein gene expression in murine early embryonic cells. Plos One. 8: e56721. PMID 23451074 DOI: 10.1371/Journal.Pone.0056721 |
0.426 |
|
| 2013 |
Rockel S, Geertz M, Hens K, Deplancke B, Maerkl SJ. iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks. Nucleic Acids Research. 41: e52. PMID 23258699 DOI: 10.1093/Nar/Gks1323 |
0.359 |
|
| 2012 |
Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, et al. Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. Plos Biology. 10: e1001442. PMID 23209382 DOI: 10.1371/Journal.Pbio.1001442 |
0.346 |
|
| 2012 |
Massouras A, Waszak SM, Albarca-Aguilera M, Hens K, Holcombe W, Ayroles JF, Dermitzakis ET, Stone EA, Jensen JD, Mackay TF, Deplancke B. Genomic variation and its impact on gene expression in Drosophila melanogaster. Plos Genetics. 8: e1003055. PMID 23189034 DOI: 10.1371/Journal.Pgen.1003055 |
0.344 |
|
| 2012 |
Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC. Topology and dynamics of the zebrafish segmentation clock core circuit. Plos Biology. 10: e1001364. PMID 22911291 DOI: 10.1371/Journal.Pbio.1001364 |
0.326 |
|
| 2012 |
Raghav SK, Waszak SM, Krier I, Gubelmann C, Isakova A, Mikkelsen TS, Deplancke B. Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO. Molecular Cell. 46: 335-50. PMID 22521691 DOI: 10.1016/J.Molcel.2012.03.017 |
0.432 |
|
| 2012 |
Hens K, Feuz JD, Deplancke B. A high-throughput gateway-compatible yeast one-hybrid screen to detect protein-DNA interactions. Methods in Molecular Biology (Clifton, N.J.). 786: 335-55. PMID 21938636 DOI: 10.1007/978-1-61779-292-2_20 |
0.423 |
|
| 2012 |
Raghav SK, Deplancke B. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing. Methods in Molecular Biology (Clifton, N.J.). 786: 247-62. PMID 21938631 DOI: 10.1007/978-1-61779-292-2_15 |
0.374 |
|
| 2011 |
Hens K, Feuz JD, Isakova A, Iagovitina A, Massouras A, Bryois J, Callaerts P, Celniker SE, Deplancke B. Automated protein-DNA interaction screening of Drosophila regulatory elements. Nature Methods. 8: 1065-70. PMID 22037703 DOI: 10.1038/Nmeth.1763 |
0.423 |
|
| 2011 |
Gubelmann C, Gattiker A, Massouras A, Hens K, David F, Decouttere F, Rougemont J, Deplancke B. GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR. Database : the Journal of Biological Databases and Curation. 2011: bar040. PMID 21917859 DOI: 10.1093/Database/Bar040 |
0.391 |
|
| 2011 |
Tabuchi TM, Deplancke B, Osato N, Zhu LJ, Barrasa MI, Harrison MM, Horvitz HR, Walhout AJ, Hagstrom KA. Chromosome-biased binding and gene regulation by the Caenorhabditis elegans DRM complex. Plos Genetics. 7: e1002074. PMID 21589891 DOI: 10.1371/Journal.Pgen.1002074 |
0.672 |
|
| 2010 |
Simicevic J, Deplancke B. DNA-centered approaches to characterize regulatory protein-DNA interaction complexes. Molecular Biosystems. 6: 462-8. PMID 20174675 DOI: 10.1039/B916137F |
0.381 |
|
| 2009 |
Reece-Hoyes JS, Deplancke B, Barrasa MI, Hatzold J, Smit RB, Arda HE, Pope PA, Gaudet J, Conradt B, Walhout AJ. The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors. Nucleic Acids Research. 37: 3689-98. PMID 19372275 DOI: 10.1093/Nar/Gkp232 |
0.678 |
|
| 2009 |
Deplancke B. Experimental advances in the characterization of metazoan gene regulatory networks. Briefings in Functional Genomics & Proteomics. 8: 12-27. PMID 19324929 DOI: 10.1093/Bfgp/Elp001 |
0.379 |
|
| 2008 |
Mukhopadhyay A, Deplancke B, Walhout AJ, Tissenbaum HA. Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans. Nature Protocols. 3: 698-709. PMID 18388953 DOI: 10.1038/Nprot.2008.38 |
0.66 |
|
| 2007 |
Vermeirssen V, Deplancke B, Barrasa MI, Reece-Hoyes JS, Arda HE, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Brent MR, Walhout AJ. Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping. Nature Methods. 4: 659-64. PMID 17589517 DOI: 10.1038/Nmeth1063 |
0.659 |
|
| 2006 |
Deplancke B, Vermeirssen V, Arda HE, Martinez NJ, Walhout AJ. Gateway-compatible yeast one-hybrid screens. Csh Protocols. 2006. PMID 22485967 DOI: 10.1101/Pdb.Prot4590 |
0.673 |
|
| 2006 |
Wang Y, Oh SW, Deplancke B, Luo J, Walhout AJ, Tissenbaum HA. C. elegans 14-3-3 proteins regulate life span and interact with SIR-2.1 and DAF-16/FOXO. Mechanisms of Ageing and Development. 127: 741-7. PMID 16860373 DOI: 10.1016/J.Mad.2006.05.005 |
0.627 |
|
| 2006 |
Deplancke B, Mukhopadhyay A, Ao W, Elewa AM, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Reece-Hoyes JS, Hope IA, Tissenbaum HA, Mango SE, Walhout AJ. A gene-centered C. elegans protein-DNA interaction network. Cell. 125: 1193-205. PMID 16777607 DOI: 10.1016/J.Cell.2006.04.038 |
0.683 |
|
| 2005 |
Reece-Hoyes JS, Deplancke B, Shingles J, Grove CA, Hope IA, Walhout AJ. A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks. Genome Biology. 6: R110. PMID 16420670 DOI: 10.1186/Gb-2005-6-13-R110 |
0.664 |
|
| 2005 |
Mukhopadhyay A, Deplancke B, Walhout AJ, Tissenbaum HA. C. elegans tubby regulates life span and fat storage by two independent mechanisms. Cell Metabolism. 2: 35-42. PMID 16054097 DOI: 10.1016/J.Cmet.2005.06.004 |
0.616 |
|
| 2004 |
Dupuy D, Li QR, Deplancke B, Boxem M, Hao T, Lamesch P, Sequerra R, Bosak S, Doucette-Stamm L, Hope IA, Hill DE, Walhout AJ, Vidal M. A first version of the Caenorhabditis elegans Promoterome. Genome Research. 14: 2169-75. PMID 15489340 DOI: 10.1101/Gr.2497604 |
0.706 |
|
| 2004 |
Deplancke B, Dupuy D, Vidal M, Walhout AJ. A gateway-compatible yeast one-hybrid system. Genome Research. 14: 2093-101. PMID 15489331 DOI: 10.1101/Gr.2445504 |
0.74 |
|
| 2003 |
Collier CT, Smiricky-Tjardes MR, Albin DM, Wubben JE, Gabert VM, Deplancke B, Bane D, Anderson DB, Gaskins HR. Molecular ecological analysis of porcine ileal microbiota responses to antimicrobial growth promoters. Journal of Animal Science. 81: 3035-45. PMID 14677859 DOI: 10.2527/2003.81123035X |
0.548 |
|
| 2003 |
Collier CT, van der Klis JD, Deplancke B, Anderson DB, Gaskins HR. Effects of tylosin on bacterial mucolysis, Clostridium perfringens colonization, and intestinal barrier function in a chick model of necrotic enteritis. Antimicrobial Agents and Chemotherapy. 47: 3311-7. PMID 14506046 DOI: 10.1128/Aac.47.10.3311-3317.2003 |
0.566 |
|
| 2003 |
Deplancke B, Gaskins HR. Hydrogen sulfide induces serum-independent cell cycle entry in nontransformed rat intestinal epithelial cells. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 17: 1310-2. PMID 12738807 DOI: 10.1096/Fj.02-0883Fje |
0.564 |
|
| 2003 |
Deplancke B, Finster K, Graham WV, Collier CT, Thurmond JE, Gaskins HR. Gastrointestinal and microbial responses to sulfate-supplemented drinking water in mice. Experimental Biology and Medicine (Maywood, N.J.). 228: 424-33. PMID 12671187 DOI: 10.1177/153537020322800413 |
0.537 |
|
| 2002 |
Deplancke B, Vidal O, Ganessunker D, Donovan SM, Mackie RI, Gaskins HR. Selective growth of mucolytic bacteria including Clostridium perfringens in a neonatal piglet model of total parenteral nutrition. The American Journal of Clinical Nutrition. 76: 1117-25. PMID 12399288 DOI: 10.1093/Ajcn/76.5.1117 |
0.53 |
|
| 2002 |
Nyholm SV, Deplancke B, Gaskins HR, Apicella MA, McFall-Ngai MJ. Roles of Vibrio fischeri and nonsymbiotic bacteria in the dynamics of mucus secretion during symbiont colonization of the Euprymna scolopes light organ. Applied and Environmental Microbiology. 68: 5113-22. PMID 12324362 DOI: 10.1128/Aem.68.10.5113-5122.2002 |
0.536 |
|
| 2002 |
Vermeirssen V, Deplancke B, Tappenden KA, Van Camp J, Gaskins HR, Verstraete W. Intestinal transport of the lactokinin Ala-Leu-Pro-Met-His-Ile-Arg through a Caco-2 Bbe monolayer. Journal of Peptide Science : An Official Publication of the European Peptide Society. 8: 95-100. PMID 11931586 DOI: 10.1002/Psc.371 |
0.509 |
|
| 2002 |
Deplancke B, Gaskins HR. Redox control of the transsulfuration and glutathione biosynthesis pathways. Current Opinion in Clinical Nutrition and Metabolic Care. 5: 85-92. PMID 11790955 DOI: 10.1097/00075197-200201000-00015 |
0.512 |
|
| 2001 |
Deplancke B, Gaskins HR. Microbial modulation of innate defense: goblet cells and the intestinal mucus layer. The American Journal of Clinical Nutrition. 73: 1131S-1141S. PMID 11393191 DOI: 10.1093/Ajcn/73.6.1131S |
0.582 |
|
| 2000 |
Deplancke B, Hristova KR, Oakley HA, McCracken VJ, Aminov R, Mackie RI, Gaskins HR. Molecular ecological analysis of the succession and diversity of sulfate-reducing bacteria in the mouse gastrointestinal tract. Applied and Environmental Microbiology. 66: 2166-74. PMID 10788396 DOI: 10.1128/Aem.66.5.2166-2174.2000 |
0.738 |
|
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