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Edward B. Chuong - Publications

Affiliations: 
2007-2013 Genetics Stanford University, Palo Alto, CA 
 2013-2018 Human Genetics University of Utah, Salt Lake City, UT 
 2018- MCDB University of Colorado, Boulder, Boulder, CO, United States 
Area:
Genomics, evolution, gene regulation, transposons
Website:
http://www.controlelements.org
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Hsieh J, Danis EP, Owens CR, Parrish JK, Nowling NL, Wolin AR, Purdy SC, Rosenbaum SR, Ivancevic AM, Chuong EB, Ford HL, Jedlicka P. Dependence of PAX3-FOXO1 chromatin occupancy on ETS1 at important disease-promoting genes exposes new targetable vulnerability in Fusion-Positive Rhabdomyosarcoma. Oncogene. PMID 39448867 DOI: 10.1038/s41388-024-03201-2  0.378
2024 Dziulko AK, Allen H, Chuong EB. An endogenous retrovirus regulates tumor-specific expression of the immune transcriptional regulator SP140. Human Molecular Genetics. PMID 38751339 DOI: 10.1093/hmg/ddae084  0.309
2023 Buttler CA, Ramirez D, Dowell RD, Chuong EB. An intronic LINE-1 regulates IFNAR1 expression in human immune cells. Mobile Dna. 14: 20. PMID 38037122 DOI: 10.1186/s13100-023-00308-3  0.376
2023 Horton I, Kelly CJ, Dziulko A, Simpson DM, Chuong EB. Mouse B2 SINE elements function as IFN-inducible enhancers. Elife. 12. PMID 37158599 DOI: 10.7554/eLife.82617  0.303
2022 Pasquesi GIM, Kelly CJ, Ordonez AD, Chuong EB. Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells. Mobile Dna. 13: 22. PMID 36068622 DOI: 10.1186/s13100-022-00277-z  0.317
2022 Kelly CJ, Chitko-McKown CG, Chuong EB. Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity. Genome Research. PMID 35948370 DOI: 10.1101/gr.276241.121  0.429
2022 Perry BW, Gopalan SS, Pasquesi GIM, Schield DR, Westfall AK, Smith CF, Koludarov I, Chippindale PT, Pellegrino MW, Chuong EB, Mackessy SP, Castoe TA. Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways. Genome Research. PMID 35649579 DOI: 10.1101/gr.276251.121  0.462
2022 Buttler CA, Chuong EB. Emerging roles for endogenous retroviruses in immune epigenetic regulation. Immunological Reviews. 305: 165-178. PMID 34816452 DOI: 10.1111/imr.13042  0.312
2020 Ivancevic A, Chuong EB. Transposable elements teach T cells new tricks. Proceedings of the National Academy of Sciences of the United States of America. 117: 9145-9147. PMID 32312814 DOI: 10.1073/Pnas.2004493117  0.521
2020 Branco MR, Chuong EB. Crossroads between transposons and gene regulation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190330. PMID 32075561 DOI: 10.1098/Rstb.2019.0330  0.522
2018 Raviram R, Rocha PP, Luo VM, Swanzey E, Miraldi ER, Chuong EB, Feschotte C, Bonneau R, Skok JA. Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate. Genome Biology. 19: 216. PMID 30541598 DOI: 10.1186/S13059-018-1598-7  0.674
2018 Chuong EB. The placenta goes viral: Retroviruses control gene expression in pregnancy. Plos Biology. 16: e3000028. PMID 30300353 DOI: 10.1371/Journal.Pbio.3000028  0.489
2017 Guernsey MW, Chuong EB, Cornelis G, Renfree MB, Baker JC. Molecular conservation of marsupial and eutherian placentation and lactation. Elife. 6. PMID 28895534 DOI: 10.7554/Elife.27450  0.521
2016 Chuong EB, Elde NC, Feschotte C. Regulatory activities of transposable elements: from conflicts to benefits. Nature Reviews. Genetics. PMID 27867194 DOI: 10.1038/Nrg.2016.139  0.721
2016 Yu Y, Yarrington RM, Chuong EB, Elde NC, Stillman DJ. Disruption of promoter memory by synthesis of a long noncoding RNA. Proceedings of the National Academy of Sciences of the United States of America. PMID 27506791 DOI: 10.1073/Pnas.1601793113  0.659
2016 Chuong EB, Elde NC, Feschotte C. Regulatory evolution of innate immunity through co-option of endogenous retroviruses. Science (New York, N.Y.). 351: 1083-7. PMID 26941318 DOI: 10.1126/Science.Aad5497  0.722
2014 Hannibal RL, Chuong EB, Rivera-Mulia JC, Gilbert DM, Valouev A, Baker JC. Copy number variation is a fundamental aspect of the placental genome. Plos Genetics. 10: e1004290. PMID 24785991 DOI: 10.1371/Journal.Pgen.1004290  0.591
2014 Wills AE, Gupta R, Chuong E, Baker JC. Chromatin immunoprecipitation and deep sequencing in Xenopus tropicalis and Xenopus laevis. Methods (San Diego, Calif.). 66: 410-21. PMID 24064036 DOI: 10.1016/J.Ymeth.2013.09.010  0.714
2013 Chuong EB, Hannibal RL, Green SL, Baker JC. Evolutionary perspectives into placental biology and disease. Applied & Translational Genomics. 2: 64-69. PMID 27896057 DOI: 10.1016/J.Atg.2013.07.001  0.493
2013 Chuong EB, Feschotte C. Evolution. Transposons up the dosage. Science (New York, N.Y.). 342: 812-3. PMID 24233714 DOI: 10.1126/Science.1246659  0.598
2013 Chuong EB. Retroviruses facilitate the rapid evolution of the mammalian placenta. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 35: 853-61. PMID 23873343 DOI: 10.1002/Bies.201300059  0.468
2013 Chuong EB, Rumi MA, Soares MJ, Baker JC. Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nature Genetics. 45: 325-9. PMID 23396136 DOI: 10.1038/Ng.2553  0.591
2013 Hannibal R, Chuong E, Rivera Mulia JC, Gilbert D, Valouev A, Baker J. Replication Timing Predicts Underreplicated Domains in Polyploid Trophoblast Giant Cells Placenta. 34: A8. DOI: 10.1016/J.Placenta.2013.06.029  0.533
2013 Chuong EB, Hannibal RL, Green SL, Baker JC. Evolutionary perspectives into placental biology and disease Applied and Translational Genomics. 2: 64-69. DOI: 10.1016/j.atg.2013.07.001  0.399
2012 Ackerman WE, Bulmer JN, Carter AM, Chaillet JR, Chamley L, Chen CP, Chuong EB, Coleman SJ, Collet GP, Croy BA, de Mestre AM, Dickinson H, Ducray J, Enders AC, Fogarty NM, et al. IFPA Meeting 2011 workshop report III: Placental immunology; epigenetic and microRNA-dependent gene regulation; comparative placentation; trophoblast differentiation; stem cells. Placenta. 33: S15-22. PMID 22154501 DOI: 10.1016/J.Placenta.2011.11.022  0.384
2011 Yoon SJ, Wills AE, Chuong E, Gupta R, Baker JC. HEB and E2A function as SMAD/FOXH1 cofactors. Genes & Development. 25: 1654-61. PMID 21828274 DOI: 10.1101/Gad.16800511  0.692
2011 Kim SW, Yoon SJ, Chuong E, Oyolu C, Wills AE, Gupta R, Baker J. Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs. Developmental Biology. 357: 492-504. PMID 21741376 DOI: 10.1016/J.Ydbio.2011.06.009  0.741
2010 Chuong EB, Tong W, Hoekstra HE. Maternal-fetal conflict: rapidly evolving proteins in the rodent placenta. Molecular Biology and Evolution. 27: 1221-5. PMID 20123797 DOI: 10.1093/Molbev/Msq034  0.628
2009 Baker J, Yoon SJ, Oyolu C, Chuong E, Kim SW. Dynamic binding of transcription factors and chromatin modifiers during endoderm formation in hESCs Developmental Biology. 331: 395. DOI: 10.1016/J.Ydbio.2009.05.043  0.534
2008 Turner LM, Chuong EB, Hoekstra HE. Comparative analysis of testis protein evolution in rodents. Genetics. 179: 2075-89. PMID 18689890 DOI: 10.1534/Genetics.107.085902  0.631
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