| Year |
Citation |
Score |
| 2024 |
Baugh AC, Defalco JB, Duscent-Maitland CV, Tumen-Velasquez MP, Laniohan NS, Figatner K, Hoover TR, Karls AC, Elliott KT, Neidle EL. Regulation of tricarboxylate transport and metabolism in ADP1. Applied and Environmental Microbiology. e0211123. PMID 38289138 DOI: 10.1128/aem.02111-23 |
0.322 |
|
| 2022 |
Bedore SR, Schmidt AL, Slarks LE, Duscent-Maitland CV, Elliott KT, Andresen S, Costa FG, Weerth RS, Tumen-Velasquez MP, Nilsen LN, Dean CE, Karls AC, Hoover TR, Neidle EL. Regulation of l- and d-Aspartate Transport and Metabolism in Acinetobacter baylyi ADP1. Applied and Environmental Microbiology. e0088322. PMID 35862682 DOI: 10.1128/aem.00883-22 |
0.691 |
|
| 2020 |
Pardo I, Jha RK, Bermel RE, Bratti F, Gaddis M, McIntyre E, Michener W, Neidle EL, Dale T, Beckham GT, Johnson CW. Gene amplification, laboratory evolution, and biosensor screening reveal MucK as a terephthalic acid transporter in Acinetobacter baylyi ADP1. Metabolic Engineering. PMID 32979486 DOI: 10.1016/j.ymben.2020.09.009 |
0.351 |
|
| 2020 |
Biggs BW, Bedore SR, Arvay E, Huang S, Subramanian H, McIntyre EA, Duscent-Maitland CV, Neidle EL, Tyo KEJ. Development of a genetic toolset for the highly engineerable and metabolically versatile Acinetobacter baylyi ADP1. Nucleic Acids Research. PMID 32246719 DOI: 10.1093/Nar/Gkaa167 |
0.369 |
|
| 2019 |
Machovina MM, Mallinson SJB, Knott BC, Meyers AW, Garcia-Borràs M, Bu L, Gado JE, Oliver A, Schmidt GP, Hinchen DJ, Crowley MF, Johnson CW, Neidle EL, Payne CM, Houk KN, et al. Enabling microbial syringol conversion through structure-guided protein engineering. Proceedings of the National Academy of Sciences of the United States of America. PMID 31235604 DOI: 10.1073/pnas.1820001116 |
0.319 |
|
| 2019 |
Tumen-Velasquez MP, Laniohan NS, Momany C, Neidle EL. Engineering CatM, a LysR-Type Transcriptional Regulator, to Respond Synergistically to Two Effectors. Genes. 10. PMID 31159259 DOI: 10.3390/Genes10060421 |
0.429 |
|
| 2018 |
Tumen-Velasquez M, Johnson CW, Ahmed A, Dominick G, Fulk EM, Khanna P, Lee SA, Schmidt AL, Linger JG, Eiteman MA, Beckham GT, Neidle EL. Accelerating pathway evolution by increasing the gene dosage of chromosomal segments. Proceedings of the National Academy of Sciences of the United States of America. PMID 29915086 DOI: 10.1073/Pnas.1803745115 |
0.463 |
|
| 2018 |
Jones RM, Popham DL, Schmidt AL, Neidle EL, Stabb EV.
DarR directs responses to d-aspartate and represents a group of similar LysR-type transcriptional regulators. Journal of Bacteriology. PMID 29437849 DOI: 10.1128/Jb.00773-17 |
0.346 |
|
| 2017 |
Stoudenmire JL, Schmidt AL, Tumen-Velasquez MP, Elliott KT, Laniohan NS, Walker Whitley S, Galloway NR, Nune M, West M, Momany C, Neidle EL, Karls AC. Malonate degradation in Acinetobacter baylyi ADP1: operon organization and regulation by MdcR. Microbiology (Reading, England). PMID 28537542 DOI: 10.1099/Mic.0.000462 |
0.762 |
|
| 2016 |
McClung DJ, Calixto A, Mosera MN, Kumar R, Neidle EL, Elliott KT. Novel heterologous bacterial system reveals enhanced susceptibility to DNA damage mediated by yqgF, a nearly ubiquitous and often essential gene. Microbiology (Reading, England). PMID 27527105 DOI: 10.1099/Mic.0.000355 |
0.733 |
|
| 2013 |
Alanazi AM, Neidle EL, Momany C. The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. Acta Crystallographica. Section D, Biological Crystallography. 69: 1995-2007. PMID 24100318 DOI: 10.1107/S0907444913017320 |
0.36 |
|
| 2013 |
Elliott KT, Cuff LE, Neidle EL. Copy number change: evolving views on gene amplification. Future Microbiology. 8: 887-99. PMID 23841635 DOI: 10.2217/Fmb.13.53 |
0.737 |
|
| 2012 |
Cuff LE, Elliott KT, Seaton SC, Ishaq MK, Laniohan NS, Karls AC, Neidle EL. Analysis of IS1236-mediated gene amplification events in Acinetobacter baylyi ADP1. Journal of Bacteriology. 194: 4395-405. PMID 22707704 DOI: 10.1128/Jb.00783-12 |
0.76 |
|
| 2012 |
Momany C, Neidle EL. Defying stereotypes: the elusive search for a universal model of LysR-type regulation. Molecular Microbiology. 83: 453-6. PMID 22235937 DOI: 10.1111/J.1365-2958.2011.07960.X |
0.359 |
|
| 2012 |
Seaton SC, Elliott KT, Cuff LE, Laniohan NS, Patel PR, Neidle EL. Genome-wide selection for increased copy number in Acinetobacter baylyi ADP1: locus and context-dependent variation in gene amplification. Molecular Microbiology. 83: 520-35. PMID 22211470 DOI: 10.1111/J.1365-2958.2011.07945.X |
0.761 |
|
| 2011 |
Elliott KT, Neidle EL. Acinetobacter baylyi ADP1: transforming the choice of model organism. Iubmb Life. 63: 1075-80. PMID 22034222 DOI: 10.1002/Iub.530 |
0.747 |
|
| 2011 |
Boynton TO, Gerdes S, Craven SH, Neidle EL, Phillips JD, Dailey HA. Discovery of a gene involved in a third bacterial protoporphyrinogen oxidase activity through comparative genomic analysis and functional complementation. Applied and Environmental Microbiology. 77: 4795-801. PMID 21642412 DOI: 10.1128/Aem.00171-11 |
0.475 |
|
| 2011 |
Alanazi A, Neidle EL, Momany C. Crystal structure of the unbound LysR-type transcriptional regulator BenM DNA binding domain Acta Crystallographica Section D-Biological Crystallography. DOI: 10.2210/Pdb3M1E/Pdb |
0.324 |
|
| 2010 |
Ruangprasert A, Craven SH, Neidle EL, Momany C. Full-length structures of BenM and two variants reveal different oligomerization schemes for LysR-type transcriptional regulators. Journal of Molecular Biology. 404: 568-86. PMID 20932977 DOI: 10.1016/J.Jmb.2010.09.053 |
0.392 |
|
| 2009 |
Craven SH, Ezezika OC, Haddad S, Hall RA, Momany C, Neidle EL. Inducer responses of BenM, a LysR-type transcriptional regulator from Acinetobacter baylyi ADP1. Molecular Microbiology. 72: 881-94. PMID 19400783 DOI: 10.1111/J.1365-2958.2009.06686.X |
0.394 |
|
| 2007 |
Craven SH, Neidle EL. Double trouble: medical implications of genetic duplication and amplification in bacteria. Future Microbiology. 2: 309-21. PMID 17661705 DOI: 10.2217/17460913.2.3.309 |
0.464 |
|
| 2007 |
Ezezika OC, Haddad S, Neidle EL, Momany C. Oligomerization of BenM, a LysR-type transcriptional regulator: structural basis for the aggregation of proteins in this family. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 361-8. PMID 17565172 DOI: 10.1107/S1744309107019185 |
0.327 |
|
| 2007 |
Ezezika OC, Haddad S, Clark TJ, Neidle EL, Momany C. Distinct effector-binding sites enable synergistic transcriptional activation by BenM, a LysR-type regulator. Journal of Molecular Biology. 367: 616-29. PMID 17291527 DOI: 10.1016/J.Jmb.2006.09.090 |
0.331 |
|
| 2006 |
Ezezika OC, Collier-Hyams LS, Dale HA, Burk AC, Neidle EL. CatM regulation of the benABCDE operon: functional divergence of two LysR-type paralogs in Acinetobacter baylyi ADP1. Applied and Environmental Microbiology. 72: 1749-58. PMID 16517618 DOI: 10.1128/Aem.72.3.1749-1758.2006 |
0.46 |
|
| 2004 |
Reams AB, Neidle EL. Selection for gene clustering by tandem duplication. Annual Review of Microbiology. 58: 119-42. PMID 15487932 DOI: 10.1146/Annurev.Micro.58.030603.123806 |
0.449 |
|
| 2004 |
Reams AB, Neidle EL. Gene amplification involves site-specific short homology-independent illegitimate recombination in Acinetobacter sp. strain ADP1. Journal of Molecular Biology. 338: 643-56. PMID 15099734 DOI: 10.1016/J.Jmb.2004.03.031 |
0.539 |
|
| 2004 |
Buchan A, Neidle EL, Moran MA. Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage. Applied and Environmental Microbiology. 70: 1658-68. PMID 15006791 DOI: 10.1128/Aem.70.3.1658-1668.2004 |
0.522 |
|
| 2004 |
Clark TJ, Phillips RS, Bundy BM, Momany C, Neidle EL. Benzoate Decreases the Binding of cis,cis-Muconate to the BenM Regulator despite the Synergistic Effect of Both Compounds on Transcriptional Activation Journal of Bacteriology. 186: 1200-1204. PMID 14762017 DOI: 10.1128/Jb.186.4.1200-1204.2004 |
0.328 |
|
| 2004 |
Clark T, Haddad S, Neidle E, Momany C. Crystallization of the effector-binding domains of BenM and CatM, LysR-type transcriptional regulators from Acinetobacter sp. ADP1. Acta Crystallographica. Section D, Biological Crystallography. 60: 105-8. PMID 14684899 DOI: 10.1107/S0907444903021589 |
0.318 |
|
| 2003 |
Brzostowicz PC, Reams AB, Clark TJ, Neidle EL. Transcriptional cross-regulation of the catechol and protocatechuate branches of the beta-ketoadipate pathway contributes to carbon source-dependent expression of the Acinetobacter sp. strain ADP1 pobA gene. Applied and Environmental Microbiology. 69: 1598-606. PMID 12620848 DOI: 10.1128/Aem.69.3.1598-1606.2003 |
0.461 |
|
| 2003 |
Reams AB, Neidle EL. Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments. Molecular Microbiology. 47: 1291-304. PMID 12603735 DOI: 10.1046/J.1365-2958.2003.03342.X |
0.513 |
|
| 2002 |
Cosper NJ, Eby DM, Kounosu A, Kurosawa N, Neidle EL, Kurtz DM, Iwasaki T, Scott RA. Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters. Protein Science : a Publication of the Protein Society. 11: 2969-73. PMID 12441394 DOI: 10.1110/Ps.0222402 |
0.307 |
|
| 2002 |
Bundy BM, Collier LS, Hoover TR, Neidle EL. Synergistic transcriptional activation by one regulatory protein in response to two metabolites. Proceedings of the National Academy of Sciences of the United States of America. 99: 7693-8. PMID 12032345 DOI: 10.1073/Pnas.102605799 |
0.71 |
|
| 2002 |
Clark TJ, Momany C, Neidle EL. The benPK operon, proposed to play a role in transport, is part of a regulon for benzoate catabolism in Acinetobacter sp. strain ADP1. Microbiology (Reading, England). 148: 1213-23. PMID 11932465 DOI: 10.1099/00221287-148-4-1213 |
0.527 |
|
| 2001 |
Buchan A, Neidle EL, Moran MA. Diversity of the Ring-Cleaving Dioxygenase Gene pcaH in a Salt Marsh Bacterial Community Applied and Environmental Microbiology. 67: 5801-5809. PMID 11722937 DOI: 10.1128/Aem.67.12.5801-5809.2001 |
0.482 |
|
| 2001 |
Haddad S, Eby DM, Neidle EL. Cloning and Expression of the Benzoate Dioxygenase Genes from Rhodococcus sp. Strain 19070 Applied and Environmental Microbiology. 67: 2507-2514. PMID 11375157 DOI: 10.1128/Aem.67.6.2507-2514.2001 |
0.552 |
|
| 2000 |
Cosper NJ, Collier LS, Clark TJ, Scott RA, Neidle EL. Mutations in catB, the gene encoding muconate cycloisomerase, activate transcription of the distal ben genes and contribute to a complex regulatory circuit in Acinetobacter sp. strain ADP1. Journal of Bacteriology. 182: 7044-52. PMID 11092867 DOI: 10.1128/Jb.182.24.7044-7052.2000 |
0.726 |
|
| 2000 |
Buchan A, Collier LS, Neidle EL, Moran MA. Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage. Applied and Environmental Microbiology. 66: 4662-72. PMID 11055908 DOI: 10.1128/Aem.66.11.4662-4672.2000 |
0.712 |
|
| 1999 |
Jones RM, Collier LS, Neidle EL, Williams PA. areABC genes determine the catabolism of aryl esters in Acinetobacter sp. Strain ADP1. Journal of Bacteriology. 181: 4568-75. PMID 10419955 DOI: 10.1128/Jb.181.15.4568-4575.1999 |
0.726 |
|
| 1998 |
Bundy BM, Campbell AL, Neidle EL. Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1 Journal of Bacteriology. 180: 4466-4474. PMID 9721284 DOI: 10.1128/Jb.180.17.4466-4474.1998 |
0.552 |
|
| 1998 |
Collier LS, Gaines GL, Neidle EL. Regulation of benzoate degradation in Acinetobacter sp. strain ADP1 by BenM, a LysR-type transcriptional activator. Journal of Bacteriology. 180: 2493-501. PMID 9573203 DOI: 10.1128/Jb.180.9.2493-2501.1998 |
0.756 |
|
| 1997 |
Collier LS, Nichols NN, Neidle EL. benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. Journal of Bacteriology. 179: 5943-6. PMID 9294456 DOI: 10.1128/Jb.179.18.5943-5946.1997 |
0.727 |
|
| 1997 |
Gralton EM, Campbell AL, Neidle EL. Directed introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. strain ADP1 (BD413UE) chromosome. Microbiology (Reading, England). 143: 1345-57. PMID 9141698 DOI: 10.1099/00221287-143-4-1345 |
0.473 |
|
| 1996 |
Gaines GL, Smith L, Neidle EL. Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus Journal of Bacteriology. 178: 6833-6841. PMID 8955304 DOI: 10.1128/Jb.178.23.6833-6841.1996 |
0.332 |
|
| 1995 |
Romero-Arroyo CE, Schell MA, Gaines GL, Neidle EL. catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus. Journal of Bacteriology. 177: 5891-8. PMID 7592340 DOI: 10.1128/Jb.177.20.5891-5898.1995 |
0.54 |
|
| 1993 |
Neidle EL, Kaplan S. 5-Aminolevulinic acid availability and control of spectral complex formation in hemA and hemT mutants of Rhodobacter sphaeroides Journal of Bacteriology. 175: 2304-2313. PMID 8468291 DOI: 10.1128/Jb.175.8.2304-2313.1993 |
0.376 |
|
| 1993 |
Neidle EL, Kaplan S. Expression of the Rhodobacter sphaeroides hemA and hemT genes, encoding two 5-aminolevulinic acid synthase isozymes Journal of Bacteriology. 175: 2292-2303. PMID 8468290 DOI: 10.1128/Jb.175.8.2292-2303.1993 |
0.52 |
|
| 1992 |
Neidle E, Hartnett C, Ornston LN, Bairoch A, Rekik M, Harayama S. cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily. European Journal of Biochemistry / Febs. 204: 113-20. PMID 1740120 DOI: 10.1111/J.1432-1033.1992.Tb16612.X |
0.682 |
|
| 1992 |
Harayama S, Kok M, Neidle EL. Functional and evolutionary relationships among diverse oxygenases Annual Review of Microbiology. 46: 565-601. PMID 1444267 DOI: 10.1146/Annurev.Mi.46.100192.003025 |
0.312 |
|
| 1992 |
Neidle EL, Kaplan S. Rhodobacter sphaeroides rdxA, a homolog of Rhizobium meliloti fixG, encodes a membrane protein which may bind cytoplasmic [4Fe-4S] clusters Journal of Bacteriology. 174: 6444-6454. PMID 1400197 DOI: 10.1128/Jb.174.20.6444-6454.1992 |
0.454 |
|
| 1991 |
Harayama S, Rekik M, Bairoch A, Neidle EL, Ornston LN. Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases. Journal of Bacteriology. 173: 7540-8. PMID 1938949 DOI: 10.1128/Jb.173.23.7540-7548.1991 |
0.702 |
|
| 1991 |
Neidle EL, Hartnett C, Ornston LN, Bairoch A, Rekik M, Harayama S. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. Journal of Bacteriology. 173: 5385-95. PMID 1885518 DOI: 10.1128/Jb.173.17.5385-5395.1991 |
0.644 |
|
| 1990 |
Hartnett C, Neidle EL, Ngai KL, Ornston LN. DNA sequences of genes encoding Acinetobacter calcoaceticus protocatechuate 3,4-dioxygenase: evidence indicating shuffling of genes and of DNA sequences within genes during their evolutionary divergence. Journal of Bacteriology. 172: 956-66. PMID 2298704 DOI: 10.1128/Jb.172.2.956-966.1990 |
0.684 |
|
| 1990 |
Ngai KL, Neidle EL, Ornston LN. Catechol and chlorocatechol 1,2-dioxygenases. Methods in Enzymology. 188: 122-6. PMID 2280696 DOI: 10.1016/0076-6879(90)88022-3 |
0.537 |
|
| 1989 |
Neidle EL, Hartnett C, Ornston LN. Characterization of Acinetobacter calcoaceticus catM, a repressor gene homologous in sequence to transcriptional activator genes. Journal of Bacteriology. 171: 5410-21. PMID 2793826 DOI: 10.1128/Jb.171.10.5410-5421.1989 |
0.738 |
|
| 1988 |
Neidle EL, Hartnett C, Bonitz S, Ornston LN. DNA sequence of the Acinetobacter calcoaceticus catechol 1,2-dioxygenase I structural gene catA: evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions. Journal of Bacteriology. 170: 4874-80. PMID 3170486 DOI: 10.1128/Jb.170.10.4874-4880.1988 |
0.693 |
|
| 1987 |
Neidle EL, Ornston LN. Benzoate and muconate, structurally dissimilar metabolites, induce expression of catA in Acinetobacter calcoaceticus. Journal of Bacteriology. 169: 414-5. PMID 3793718 DOI: 10.1128/Jb.169.1.414-415.1987 |
0.638 |
|
| 1987 |
Neidle EL, Shapiro MK, Ornston LN. Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation. Journal of Bacteriology. 169: 5496-503. PMID 2824437 DOI: 10.1128/Jb.169.12.5496-5503.1987 |
0.714 |
|
| 1986 |
Neidle EL, Ornston LN. Cloning and expression of Acinetobacter calcoaceticus catechol 1,2-dioxygenase structural gene catA in Escherichia coli. Journal of Bacteriology. 168: 815-20. PMID 3536862 DOI: 10.1128/Jb.168.2.815-820.1986 |
0.716 |
|
| 1986 |
Shanley MS, Neidle EL, Parales RE, Ornston LN. Cloning and expression of Acinetobacter calcoaceticus catBCDE genes in Pseudomonas putida and Escherichia coli. Journal of Bacteriology. 165: 557-63. PMID 3003031 DOI: 10.1128/Jb.165.2.557-563.1986 |
0.72 |
|
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