| Year |
Citation |
Score |
| 2023 |
Petersen C, Sørensen T, Nielsen MR, Sondergaard TE, Sørensen JL, Fitzpatrick DA, Frisvad JC, Nielsen KL. Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events. Ima Fungus. 14: 3. PMID 36726175 DOI: 10.1186/s43008-023-00108-7 |
0.432 |
|
| 2022 |
Daly P, Zhou D, Shen D, Chen Y, Xue T, Chen S, Zhang Q, Zhang J, McGowan J, Cai F, Pang G, Wang N, Sheikh TMM, Deng S, Li J, ... ... Fitzpatrick DA, et al. Genome of Uncovers an Extensive Arsenal of Virulence-Related Genes among the Broad-Host-Range Necrotrophic Plant Pathogens. Microbiology Spectrum. e0226821. PMID 35946960 DOI: 10.1128/spectrum.02268-21 |
0.319 |
|
| 2022 |
DiStefano MT, Goehringer S, Babb L, Alkuraya FS, Amberger J, Amin M, Austin-Tse C, Balzotti M, Berg JS, Birney E, Bocchini C, Bruford EA, Coffey AJ, Collins H, Cunningham F, ... ... Fitzpatrick DR, et al. The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 35507016 DOI: 10.1016/j.gim.2022.04.017 |
0.372 |
|
| 2020 |
McGowan J, O'Hanlon R, Owens RA, Fitzpatrick DA. Comparative Genomic and Proteomic Analyses of Three Widespread Species: , and . Microorganisms. 8. PMID 32365808 DOI: 10.3390/microorganisms8050653 |
0.342 |
|
| 2019 |
O'Connor E, McGowan J, McCarthy CGP, Amini A, Grogan H, Fitzpatrick DA. Whole Genome Sequence of the Commercially Relevant Mushroom Strain var. ARP23. G3 (Bethesda, Md.). PMID 31371382 DOI: 10.1534/g3.119.400563 |
0.311 |
|
| 2019 |
Harding P, Brooks BP, FitzPatrick D, Moosajee M. Anophthalmia including next-generation sequencing-based approaches. European Journal of Human Genetics : Ejhg. PMID 31358957 DOI: 10.1038/s41431-019-0479-1 |
0.329 |
|
| 2019 |
McCarthy CGP, Fitzpatrick DA. Pangloss: A Tool for Pan-Genome Analysis of Microbial Eukaryotes. Genes. 10. PMID 31295964 DOI: 10.3390/genes10070521 |
0.31 |
|
| 2019 |
Thormann A, Halachev M, McLaren W, Moore DJ, Svinti V, Campbell A, Kerr SM, Tischkowitz M, Hunt SE, Dunlop MG, Hurles ME, Wright CF, Firth HV, Cunningham F, FitzPatrick DR. Flexible and scalable diagnostic filtering of genomic variants using G2P with Ensembl VEP. Nature Communications. 10: 2373. PMID 31147538 DOI: 10.1038/s41467-019-10016-3 |
0.681 |
|
| 2019 |
McCarthy CGP, Fitzpatrick DA. Pan-genome analyses of model fungal species. Microbial Genomics. PMID 30714895 DOI: 10.1099/mgen.0.000243 |
0.386 |
|
| 2018 |
Rahman F, Hassan M, Hanano A, Fitzpatrick DA, McCarthy CGP, Murphy DJ. Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi. Bmc Genomics. 19: 976. PMID 30593269 DOI: 10.1186/s12864-018-5334-1 |
0.328 |
|
| 2018 |
McGowan J, Byrne KP, Fitzpatrick DA. Comparative Analysis of Oomycete Genome Evolution using the Oomycete Gene Order Browser (OGOB). Genome Biology and Evolution. PMID 30535146 DOI: 10.1093/gbe/evy267 |
0.459 |
|
| 2018 |
O'Brien CE, McCarthy CGP, Walshe AE, Shaw DR, Sumski DA, Krassowski T, Fitzpatrick DA, Butler G. Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade. Plos One. 13: e0198957. PMID 29944657 DOI: 10.1371/Journal.Pone.0198957 |
0.305 |
|
| 2018 |
Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, ... ... Fitzpatrick D, et al. Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nature Ecology & Evolution. PMID 29426895 DOI: 10.1038/S41559-018-0469-7 |
0.425 |
|
| 2017 |
Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, ... ... Fitzpatrick D, et al. Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nature Ecology & Evolution. PMID 29085064 DOI: 10.1038/S41559-017-0347-8 |
0.49 |
|
| 2017 |
Collins C, Hurley R, Almutlaqah N, O'Keeffe G, Keane TM, Fitzpatrick DA, Owens RA. Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles. Microorganisms. 5. PMID 28926970 DOI: 10.3390/microorganisms5030060 |
0.464 |
|
| 2017 |
Waldron R, McGowan J, Gordon N, McCarthy C, Mitchell EB, Doyle S, Fitzpatrick DA. Draft Genome Sequence of Dermatophagoides pteronyssinus, the European House Dust Mite. Genome Announcements. 5. PMID 28798186 DOI: 10.1128/genomeA.00789-17 |
0.328 |
|
| 2017 |
McCarthy CGP, Fitzpatrick DA. Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes. Msphere. 2. PMID 28435885 DOI: 10.1128/mSphere.00095-17 |
0.4 |
|
| 2017 |
McGill LM, Fitzpatrick DA, Pisani D, Burnell AM. Estimation of phylogenetic divergence times in Panagrolaimidae and other nematodes using relaxed molecular clocks calibrated with insect and crustacean fossils Nematology. 19: 899-913. DOI: 10.1163/15685411-00003096 |
0.484 |
|
| 2016 |
McCarthy CG, Fitzpatrick DA. Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages. Msphere. 1. PMID 27642638 DOI: 10.1128/mSphere.00195-16 |
0.406 |
|
| 2016 |
Fitzpatrick D, Walsh F. Antibiotic resistance genes across a wide variety of metagenomes. Fems Microbiology Ecology. PMID 26738556 DOI: 10.1093/Femsec/Fiv168 |
0.435 |
|
| 2015 |
Owens RA, O'Keeffe G, Smith EB, Dolan SK, Hammel S, Sheridan KJ, Fitzpatrick DA, Keane TM, Jones GW, Doyle S. Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus. Eukaryotic Cell. 14: 941-57. PMID 26150413 DOI: 10.1128/EC.00055-15 |
0.465 |
|
| 2015 |
Naville M, Ishibashi M, Ferg M, Bengani H, Rinkwitz S, Krecsmarik M, Hawkins TA, Wilson SW, Manning E, Chilamakuri CS, Wilson DI, Louis A, Lucy Raymond F, Rastegar S, Strähle U, ... ... FitzPatrick DR, et al. Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. Nature Communications. 6: 6904. PMID 25908307 DOI: 10.1038/Ncomms7904 |
0.346 |
|
| 2014 |
O'Keeffe G, Hammel S, Owens RA, Keane TM, Fitzpatrick DA, Jones GW, Doyle S. RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus. Bmc Genomics. 15: 894. PMID 25311525 DOI: 10.1186/1471-2164-15-894 |
0.529 |
|
| 2014 |
Jones GW, Doyle S, Fitzpatrick DA. The evolutionary history of the genes involved in the biosynthesis of the antioxidant ergothioneine. Gene. 549: 161-70. PMID 25068406 DOI: 10.1016/j.gene.2014.07.065 |
0.423 |
|
| 2014 |
Reardon W, Gallagher P, Nolan KM, Wright H, Cardeñosa-Rubio MC, Bragalini C, Lee CS, Fitzpatrick DA, Corcoran K, Wolff K, Nugent JM. Different outcomes for the MYB floral symmetry genes DIVARICATA and RADIALIS during the evolution of derived actinomorphy in Plantago. The New Phytologist. 202: 716-25. PMID 24460533 DOI: 10.1111/nph.12682 |
0.32 |
|
| 2014 |
Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO. A pluralistic account of homology: adapting the models to the data. Molecular Biology and Evolution. 31: 501-16. PMID 24273322 DOI: 10.1093/Molbev/Mst228 |
0.746 |
|
| 2013 |
Collins C, Keane TM, Turner DJ, O'Keeffe G, Fitzpatrick DA, Doyle S. Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system. Journal of Proteome Research. 12: 2552-70. PMID 23656496 DOI: 10.1021/pr301131t |
0.561 |
|
| 2013 |
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Bürglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, ... ... Fitzpatrick DA, et al. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology. 14: R11. PMID 23375108 DOI: 10.1186/Gb-2013-14-2-R11 |
0.379 |
|
| 2012 |
Fitzpatrick DA. Horizontal gene transfer in fungi. Fems Microbiology Letters. 329: 1-8. PMID 22112233 DOI: 10.1111/j.1574-6968.2011.02465.x |
0.451 |
|
| 2011 |
Medina EM, Jones GW, Fitzpatrick DA. Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom. Journal of Molecular Evolution. 73: 116-33. PMID 21938499 DOI: 10.1007/s00239-011-9461-4 |
0.381 |
|
| 2011 |
Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P. Universally distributed single-copy genes indicate a constant rate of horizontal transfer. Plos One. 6: e22099. PMID 21850220 DOI: 10.1371/Journal.Pone.0022099 |
0.69 |
|
| 2010 |
Fitzpatrick DA, O'Gaora P, Byrne KP, Butler G. Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser. Bmc Genomics. 11: 290. PMID 20459735 DOI: 10.1186/1471-2164-11-290 |
0.437 |
|
| 2009 |
Haggerty LS, Martin FJ, Fitzpatrick DA, McInerney JO. Gene and genome trees conflict at many levels. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2209-19. PMID 19571241 DOI: 10.1098/Rstb.2009.0042 |
0.732 |
|
| 2009 |
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, ... ... Fitzpatrick DA, et al. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature. 459: 657-62. PMID 19465905 DOI: 10.1038/Nature08064 |
0.345 |
|
| 2009 |
Fitzpatrick DA. Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species. Journal of Molecular Evolution. 68: 171-85. PMID 19189039 DOI: 10.1007/s00239-009-9198-5 |
0.397 |
|
| 2008 |
Fitzpatrick DA, Logue ME, Butler G. Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis. Bmc Evolutionary Biology. 8: 181. PMID 18577206 DOI: 10.1186/1471-2148-8-181 |
0.413 |
|
| 2007 |
Johnston CR, O'Dushlaine C, Fitzpatrick DA, Edwards RJ, Shields DC. Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication. Molecular Biology and Evolution. 24: 315-23. PMID 17065596 DOI: 10.1093/Molbev/Msl162 |
0.366 |
|
| 2006 |
Fitzpatrick DA, Logue ME, Stajich JE, Butler G. A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. Bmc Evolutionary Biology. 6: 99. PMID 17121679 DOI: 10.1186/1471-2148-6-99 |
0.423 |
|
| 2006 |
O'Halloran DM, Fitzpatrick DA, McCormack GP, McInerney JO, Burnell AM. The molecular phylogeny of a nematode-specific clade of heterotrimeric G-protein alpha-subunit genes. Journal of Molecular Evolution. 63: 87-94. PMID 16786439 DOI: 10.1007/S00239-005-0215-Z |
0.567 |
|
| 2006 |
Fitzpatrick DA, Creevey CJ, McInerney JO. Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Molecular Biology and Evolution. 23: 74-85. PMID 16151187 DOI: 10.1093/Molbev/Msj009 |
0.761 |
|
| 2005 |
Fitzpatrick DA, Creevey CJ, McInerney JO. Evidence of positive Darwinian selection in putative meningococcal vaccine antigens. Journal of Molecular Evolution. 61: 90-8. PMID 16007491 DOI: 10.1007/S00239-004-0290-6 |
0.653 |
|
| 2005 |
FitzPatrick DR. Transcriptional consequences of autosomal trisomy: primary gene dosage with complex downstream effects. Trends in Genetics : Tig. 21: 249-53. PMID 15851056 DOI: 10.1016/j.tig.2005.02.012 |
0.316 |
|
| 2005 |
Fitzpatrick DA, McInerney JO. Evidence of positive Darwinian selection in Omp85, a highly conserved bacterial outer membrane protein essential for cell viability. Journal of Molecular Evolution. 60: 268-73. PMID 15785855 DOI: 10.1007/S00239-004-0194-5 |
0.498 |
|
| 2004 |
Creevey CJ, Fitzpatrick DA, Philip GK, Kinsella RJ, O'Connell MJ, Pentony MM, Travers SA, Wilkinson M, McInerney JO. Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proceedings. Biological Sciences / the Royal Society. 271: 2551-8. PMID 15615680 DOI: 10.1098/Rspb.2004.2864 |
0.664 |
|
| 2003 |
Kinsella RJ, Fitzpatrick DA, Creevey CJ, McInerney JO. Fatty acid biosynthesis in Mycobacterium tuberculosis: lateral gene transfer, adaptive evolution, and gene duplication. Proceedings of the National Academy of Sciences of the United States of America. 100: 10320-5. PMID 12917487 DOI: 10.1073/Pnas.1737230100 |
0.734 |
|
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