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Carla Cummins - Publications

Affiliations: 
Biology National University of Ireland Maynooth, Maynooth, County Kildare, Ireland 
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21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Rahman N, O'Cathail C, Zyoud A, Sokolov A, Oude Munnink B, Grüning B, Cummins C, Amid C, Nieuwenhuijse DF, Visontai D, Yuan DY, Gupta D, Prasad DK, Gulyás GM, Rinck G, et al. Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses. Microbial Genomics. 10. PMID 38358325 DOI: 10.1099/mgen.0.001188  0.404
2024 Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, ... ... Cummins C, et al. Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution. PMID 38216617 DOI: 10.1038/s41559-023-02299-z  0.798
2023 Timme RE, Karsch-Mizrachi I, Waheed Z, Arita M, MacCannell D, Maguire F, Petit Iii R, Page AJ, Mendes CI, Nasar MI, Oluniyi P, Tyler AD, Raphenya AR, Guthrie JL, Olawoye I, ... ... Cummins C, et al. Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications. Microbial Genomics. 9. PMID 38085797 DOI: 10.1099/mgen.0.001145  0.428
2023 Yuan D, Ahamed A, Burgin J, Cummins C, Devraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Kadhirvelu VB, Kumar M, Lathi A, et al. The European Nucleotide Archive in 2023. Nucleic Acids Research. PMID 37956313 DOI: 10.1093/nar/gkad1067  0.451
2022 Burgin J, Ahamed A, Cummins C, Devraj R, Gueye K, Gupta D, Gupta V, Haseeb M, Ihsan M, Ivanov E, Jayathilaka S, Balavenkataraman Kadhirvelu V, Kumar M, Lathi A, Leinonen R, et al. The European Nucleotide Archive in 2022. Nucleic Acids Research. PMID 36399492 DOI: 10.1093/nar/gkac1051  0.303
2021 Cunningham F, Allen JE, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Austine-Orimoloye O, Azov AG, Barnes I, Bennett R, Berry A, Bhai J, Bignell A, Billis K, Boddu S, ... ... Cummins C, et al. Ensembl 2022. Nucleic Acids Research. PMID 34791404 DOI: 10.1093/nar/gkab1049  0.807
2021 De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, et al. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Research. PMID 34634797 DOI: 10.1093/nar/gkab889  0.776
2020 Howe KL, Achuthan P, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Charkhchi M, Cummins C, Da Rin Fioretto L, et al. Ensembl 2021. Nucleic Acids Research. PMID 33137190 DOI: 10.1093/nar/gkaa942  0.819
2019 Yates AD, Achuthan P, Akanni W, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Marugán JC, Cummins C, et al. Ensembl 2020. Nucleic Acids Research. PMID 31691826 DOI: 10.1093/nar/gkz966  0.813
2019 Howe KL, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, Alvarez-Jarreta J, Barba M, Bolser DM, Cambell L, Carbajo M, Chakiachvili M, Christensen M, Cummins C, Cuzick A, et al. Ensembl Genomes 2020-enabling non-vertebrate genomic research. Nucleic Acids Research. PMID 31598706 DOI: 10.1093/Nar/Gkz890  0.726
2018 Cunningham F, Achuthan P, Akanni W, Allen J, Amode MR, Armean IM, Bennett R, Bhai J, Billis K, Boddu S, Cummins C, Davidson C, Dodiya KJ, Gall A, Girón CG, et al. Ensembl 2019. Nucleic Acids Research. PMID 30407521 DOI: 10.1093/nar/gky1113  0.804
2018 Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, ... Cummins C, et al. Repeat associated mechanisms of genome evolution and function revealed by theandgenomes. Genome Research. PMID 29563166 DOI: 10.1101/Gr.234096.117  0.793
2017 Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T, et al. Ensembl 2018. Nucleic Acids Research. PMID 29155950 DOI: 10.1093/nar/gkx1098  0.81
2017 Cummins C, Patricio M, Akanni W, Muffato M, Aken B, Flicek P. Moving towards comparative analysis of hundreds of vertebrate genomes F1000research. 6. DOI: 10.7490/F1000Research.1115012.1  0.635
2017 Patricio M, Muffato M, Akanni W, Cummins C, Aken B, Flicek P. Ensembl comparative genomics update – HMMs and Orthology QC F1000research. 6. DOI: 10.7490/F1000Research.1114127.1  0.619
2016 Aken BL, Achuthan P, Akanni W, Amode MR, Bernsdorff F, Bhai J, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, et al. Ensembl 2017. Nucleic Acids Research. PMID 27899575 DOI: 10.1093/nar/gkw1104  0.831
2016 Barquist L, Mayho M, Cummins C, Cain AK, Boinett C, Page AJ, Langridge GC, Quail MA, Keane JA, Parkhill J. The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries. Bioinformatics (Oxford, England). PMID 26794317 DOI: 10.1093/bioinformatics/btw022  0.389
2015 Yates A, Akanni W, Amode MR, Barrell D, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, et al. Ensembl 2016. Nucleic Acids Research. PMID 26687719 DOI: 10.1093/nar/gkv1157  0.799
2015 Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J. Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics (Oxford, England). PMID 26198102 DOI: 10.1093/bioinformatics/btv421  0.631
2011 McInerney J, Cummins C, Haggerty L. Goods-thinking vs. tree-thinking: Finding a place for mobile genetic elements. Mobile Genetic Elements. 1: 304-308. PMID 22545244 DOI: 10.4161/Mge.19153  0.708
2011 Cummins CA, McInerney JO. A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases Systematic Biology. 60: 833-844. PMID 21804093 DOI: 10.1093/Sysbio/Syr064  0.55
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