| Year |
Citation |
Score |
| 2023 |
Ruiz-Perez D, Gimon I, Sazal M, Mathee K, Narasimhan G. Unfolding and De-confounding: Biologically meaningful causal inference from longitudinal multi-omic networks using METALICA. Biorxiv : the Preprint Server For Biology. PMID 38168315 DOI: 10.1101/2023.12.12.571384 |
0.303 |
|
| 2021 |
Ruiz-Perez D, Lugo-Martinez J, Bourguignon N, Mathee K, Lerner B, Bar-Joseph Z, Narasimhan G. Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data. Msystems. 6. PMID 33785573 DOI: 10.1128/mSystems.01105-20 |
0.32 |
|
| 2019 |
Valdes C, Stebliankin V, Narasimhan G. Large scale microbiome profiling in the cloud. Bioinformatics (Oxford, England). 35: i13-i22. PMID 31510682 DOI: 10.1093/Bioinformatics/Btz356 |
0.333 |
|
| 2019 |
Cickovski T, Aguiar-Pulido V, Narasimhan G. MATria: a unified centrality algorithm. Bmc Bioinformatics. 20: 278. PMID 31167635 DOI: 10.1186/S12859-019-2820-7 |
0.352 |
|
| 2019 |
Lugo-Martinez J, Ruiz-Perez D, Narasimhan G, Bar-Joseph Z. Dynamic interaction network inference from longitudinal microbiome data. Microbiome. 7: 54. PMID 30940197 DOI: 10.1186/S40168-019-0660-3 |
0.356 |
|
| 2018 |
Cickovski T, Narasimhan G. Constructing Lightweight And Flexible Pipelines Using Plugin-Based Microbiome Analysis (PluMA). Bioinformatics (Oxford, England). PMID 29618009 DOI: 10.1093/Bioinformatics/Bty198 |
0.303 |
|
| 2017 |
Cickovski T, Peake E, Aguiar-Pulido V, Narasimhan G. ATria: a novel centrality algorithm applied to biological networks. Bmc Bioinformatics. 18: 239. PMID 28617231 DOI: 10.1186/S12859-017-1659-Z |
0.361 |
|
| 2016 |
Aguiar-Pulido V, Huang W, Suarez-Ulloa V, Cickovski T, Mathee K, Narasimhan G. Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis. Evolutionary Bioinformatics Online. 12: 5-16. PMID 27199545 DOI: 10.4137/Ebo.S36436 |
0.336 |
|
| 2016 |
Huang W, Kazmierczak K, Zhou Z, Aguiar-Pulido V, Narasimhan G, Szczesna-Cordary D. Gene Expression Patterns in Transgenic Mouse Models of Hypertrophic Cardiomyopathy Caused by Mutations in Myosin Regulatory Light Chain. Archives of Biochemistry and Biophysics. PMID 26906074 DOI: 10.1016/J.Abb.2016.02.022 |
0.322 |
|
| 2015 |
Cickovski T, Flor T, Irving-Sachs G, Novikov P, Parda J, Narasimhan G. GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 445-54. PMID 26357230 DOI: 10.1109/Tcbb.2014.2355231 |
0.349 |
|
| 2015 |
Yan J, Zhang K, Zhang C, Chen S, Narasimhan G. Automatic Construction of 3-D Building Model From Airborne LIDAR Data Through 2-D Snake Algorithm Ieee Transactions On Geoscience and Remote Sensing. 53: 3-14. DOI: 10.1109/Tgrs.2014.2312393 |
0.307 |
|
| 2012 |
Balasubramanian D, Schneper L, Merighi M, Smith R, Narasimhan G, Lory S, Mathee K. The regulatory repertoire of Pseudomonas aeruginosa AmpC ß-lactamase regulator AmpR includes virulence genes. Plos One. 7: e34067. PMID 22479525 DOI: 10.1371/Journal.Pone.0034067 |
0.319 |
|
| 2012 |
Cattoir V, Narasimhan G, Skurnik D, Aschard H, Roux D, Ramphal R, Jyot J, Lory S. Transcriptional response of mucoid pseudomonas aeruginosa to human respiratory mucus Mbio. 3. DOI: 10.1128/Mbio.00410-12 |
0.305 |
|
| 2012 |
Zeng E, Ding C, Mathee K, Schneper L, Narasimhan G. Gene Function Prediction and Functional Network: The Role of Gene Ontology Intelligent Systems Reference Library. 25: 123-162. DOI: 10.1007/978-3-642-23151-3_7 |
0.637 |
|
| 2010 |
Doud MS, Light M, Gonzalez G, Narasimhan G, Mathee K. Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients. Human Genomics. 4: 147-69. PMID 20368138 DOI: 10.1186/1479-7364-4-3-147 |
0.308 |
|
| 2010 |
Zeng E, Yang C, Li T, Narasimhan G. Clustering Genes Using Heterogeneous Data Sources International Journal of Knowledge Discovery in Bioinformatics. 1: 12-28. DOI: 10.4018/Jkdb.2010040102 |
0.75 |
|
| 2009 |
Buendia P, Narasimhan G. Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains. Bmc Systems Biology. 3: 62. PMID 19531207 DOI: 10.1186/1752-0509-3-62 |
0.757 |
|
| 2009 |
Doud M, Zeng E, Schneper L, Narasimhan G, Mathee K. Approaches to analyse dynamic microbial communities such as those seen in cystic fibrosis lung. Human Genomics. 3: 246-56. PMID 19403459 DOI: 10.1186/1479-7364-3-3-246 |
0.61 |
|
| 2008 |
Zeng E, Ding C, Narasimhan G, Holbrook SR. Estimating support for protein-protein interaction data with applications to function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 7: 73-84. PMID 19642270 |
0.62 |
|
| 2008 |
Mathee K, Narasimhan G, Valdes C, Qiu X, Matewish JM, Koehrsen M, Rokas A, Yandava CN, Engels R, Zeng E, Olavarietta R, Doud M, Smith RS, Montgomery P, White JR, et al. Dynamics of Pseudomonas aeruginosa genome evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 3100-5. PMID 18287045 DOI: 10.1073/Pnas.0711982105 |
0.627 |
|
| 2008 |
Buendia P, Collins TM, Narasimhan G. The role of internal node sequences and the molecular clock in the analysis of serially-sampled data. International Journal of Bioinformatics Research and Applications. 4: 107-21. PMID 18283032 DOI: 10.1504/Ijbra.2008.017167 |
0.767 |
|
| 2007 |
Zeng E, Mathee K, Narasimhan G. IEM: an algorithm for iterative enhancement of motifs using comparative genomics data. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 227-35. PMID 17951827 |
0.65 |
|
| 2007 |
Buendia P, Narasimhan G. Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach. Bioinformatics (Oxford, England). 23: 2993-3000. PMID 17717035 DOI: 10.1093/Bioinformatics/Btm413 |
0.768 |
|
| 2006 |
Buendia P, Narasimhan G. Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network. Bioinformatics (Oxford, England). 22: 2313-4. PMID 16844708 DOI: 10.1093/Bioinformatics/Btl387 |
0.753 |
|
| 2006 |
Yang C, Mills D, Mathee K, Wang Y, Jayachandran K, Sikaroodi M, Gillevet P, Entry J, Narasimhan G. An eco-informatics tool for microbial community studies: supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. Journal of Microbiological Methods. 65: 49-62. PMID 16054254 DOI: 10.1016/J.Mimet.2005.06.012 |
0.692 |
|
| 2005 |
Yang C, Zeng E, Li T, Narasimhan G. Clustering genes using gene expression and text literature data. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 329-40. PMID 16447990 DOI: 10.1109/CSB.2005.23 |
0.749 |
|
| 2005 |
Handfield M, Mans JJ, Zheng G, Lopez MC, Mao S, Progulske-Fox A, Narasimhan G, Baker HV, Lamont RJ. Distinct transcriptional profiles characterize oral epithelium-microbiota interactions. Cellular Microbiology. 7: 811-23. PMID 15888084 DOI: 10.1111/J.1462-5822.2005.00513.X |
0.669 |
|
| 2004 |
Buendia P, Narasimhan G. MinPD: distance-based phylogenetic analysis and recombination detection of serially-sampled HIV quasispecies. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 110-9. PMID 16448005 |
0.767 |
|
| 2003 |
Mathee K, Narasimhan G. Detection of DNA-binding helix-turn-helix motifs in proteins using the pattern dictionary method. Methods in Enzymology. 370: 250-64. PMID 14712650 DOI: 10.1016/S0076-6879(03)70022-6 |
0.329 |
|
| 2002 |
Narasimhan G, Bu C, Gao Y, Wang X, Xu N, Mathee K. Mining protein sequences for motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 707-20. PMID 12487759 DOI: 10.1089/106652702761034145 |
0.343 |
|
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