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Julie M. Claycomb, Ph. D. - Publications

Affiliations: 
Molecular Genetics University of Toronto, Toronto, ON, Canada 
Area:
small RNAs, gene silencing, C. elegans, development, germline, chromatin
Website:
http://individual.utoronto.ca/claycomblab/
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Renaud MS, Seroussi U, Claycomb JM. Analysis of C. elegans Germline Small RNA Pathways. Methods in Molecular Biology (Clifton, N.J.). 2677: 37-59. PMID 37464234 DOI: 10.1007/978-1-0716-3259-8_2  0.845
2023 Seroussi U, Lugowski A, Wadi L, Lao RX, Willis AR, Zhao W, Sundby AE, Charlesworth AG, Reinke AW, Claycomb JM. A comprehensive survey of argonaute proteins reveals organism-wide gene regulatory networks and functions. Elife. 12. PMID 36790166 DOI: 10.7554/eLife.83853  0.823
2022 Fusca DD, Sharma E, Weiss JG, Claycomb JM, Cutter AD. Temperature-dependent small RNA expression depends on wild genetic backgrounds of Caenorhabditis briggsae. Molecular Biology and Evolution. PMID 36223483 DOI: 10.1093/molbev/msac218  0.541
2022 Charlesworth AG, Nitschko V, Renaud MS, Claycomb JM. PIWI puts spermatogenesis in its place. Developmental Cell. 57: 149-151. PMID 35077678 DOI: 10.1016/j.devcel.2022.01.001  0.766
2021 Seroussi U, Li C, Sundby AE, Lee TL, Claycomb JM, Saltzman AL. Mechanisms of epigenetic regulation by C. elegans nuclear RNA interference pathways. Seminars in Cell & Developmental Biology. PMID 34876343 DOI: 10.1016/j.semcdb.2021.11.018  0.854
2021 Charlesworth AG, Seroussi U, Lehrbach NJ, Renaud MS, Sundby AE, Molnar RI, Lao RX, Willis AR, Woock JR, Aber MJ, Diao AJ, Reinke AW, Ruvkun G, Claycomb JM. Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility. Nucleic Acids Research. PMID 34329465 DOI: 10.1093/nar/gkab619  0.795
2021 Sundby AE, Molnar RI, Claycomb JM. Connecting the Dots: Linking Caenorhabditis elegans Small RNA Pathways and Germ Granules. Trends in Cell Biology. PMID 33526340 DOI: 10.1016/j.tcb.2020.12.012  0.639
2019 Garcia B, Lee J, Edraki A, Hidalgo-Reyes Y, Erwood S, Mir A, Trost CN, Seroussi U, Stanley SY, Cohn RD, Claycomb JM, Sontheimer EJ, Maxwell KL, Davidson AR. Anti-CRISPR AcrIIA5 Potently Inhibits All Cas9 Homologs Used for Genome Editing. Cell Reports. 29: 1739-1746.e5. PMID 31722192 DOI: 10.1016/J.Celrep.2019.10.017  0.799
2019 Ouyang JPT, Folkmann A, Bernard L, Lee CY, Seroussi U, Charlesworth AG, Claycomb JM, Seydoux G. P Granules Protect RNA Interference Genes from Silencing by piRNAs. Developmental Cell. PMID 31402283 DOI: 10.1016/J.Devcel.2019.07.026  0.824
2019 Winkenbach LP, Doser R, Reed KJ, Pasquinelli AE, Phillips CM, Claycomb JM. Todos Santos small RNA symposium. Rna Biology. 1-5. PMID 31397621 DOI: 10.1080/15476286.2019.1649586  0.483
2019 Lev I, Toker IA, Mor Y, Nitzan A, Weintraub G, Antonova O, Bhonkar O, Ben Shushan I, Seroussi U, Claycomb JM, Anava S, Gingold H, Zaidel-Bar R, Rechavi O. Germ Granules Govern Small RNA Inheritance. Current Biology : Cb. PMID 31378614 DOI: 10.1016/J.Cub.2019.07.054  0.842
2019 Mark S, Weiss J, Sharma E, Liu T, Wang W, Claycomb JM, Cutter AD. Genome structure predicts modular transcriptome responses to genetic and environmental conditions. Molecular Ecology. PMID 31325381 DOI: 10.1111/Mec.15185  0.343
2019 Charlesworth AG, Seroussi U, Claycomb JM. Next-Gen Learning: The C. elegans Approach. Cell. 177: 1674-1676. PMID 31199913 DOI: 10.1016/J.Cell.2019.05.039  0.719
2019 Chow FW, Koutsovoulos G, Ovando-Vázquez C, Neophytou K, Bermúdez-Barrientos JR, Laetsch DR, Robertson E, Kumar S, Claycomb JM, Blaxter M, Abreu-Goodger C, Buck AH. Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides. Nucleic Acids Research. PMID 30820541 DOI: 10.1093/Nar/Gkz142  0.577
2018 Davis GM, Tu S, Anderson JWT, Colson RN, Gunzburg MJ, Francisco MA, Ray D, Shrubsole SP, Sobotka JA, Seroussi U, Lao RX, Maity T, Wu MZ, McJunkin K, Morris QD, ... ... Claycomb JM, et al. The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in . Elife. 7. PMID 30575518 DOI: 10.7554/Elife.35478  0.846
2018 Davis GM, Tu S, Anderson JW, Colson RN, Gunzburg MJ, Francisco MA, Ray D, Shrubsole SP, Sobotka JA, Seroussi U, Lao RX, Maity T, Wu MZ, McJunkin K, Morris QD, ... ... Claycomb JM, et al. Author response: The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in C. elegans Elife. DOI: 10.7554/Elife.35478.032  0.358
2017 Tyc KM, Nabih A, Wu MZ, Wedeles CJ, Sobotka JA, Claycomb JM. The Conserved Intron Binding Protein EMB-4 Plays Differential Roles in Germline Small RNA Pathways of C. elegans. Developmental Cell. 42: 256-270.e6. PMID 28787592 DOI: 10.1016/J.Devcel.2017.07.003  0.834
2017 Akay A, Di Domenico T, Suen KM, Nabih A, Parada GE, Larance M, Medhi R, Berkyurek AC, Zhang X, Wedeles CJ, Rudolph KLM, Engelhardt J, Hemberg M, Ma P, Lamond AI, ... Claycomb JM, et al. The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription. Developmental Cell. 42: 241-255.e6. PMID 28787591 DOI: 10.1016/J.Devcel.2017.07.002  0.689
2017 Nabih A, Sobotka JA, Wu MZ, Wedeles CJ, Claycomb JM. Examining the intersection between splicing, nuclear export and small RNA pathways. Biochimica Et Biophysica Acta. PMID 28578161 DOI: 10.1016/J.Bbagen.2017.05.027  0.823
2017 Claycomb J, Abreu-Goodger C, Buck AH. RNA-Mediated Communication Between Helminths and their Hosts: The Missing Links. Rna Biology. 0. PMID 28125361 DOI: 10.1080/15476286.2016.1274852  0.595
2016 Luo H, Li X, Claycomb JM, Lipshitz HD. The Smaug RNA-Binding Protein Is Essential for microRNA Synthesis During the Drosophila Maternal-to-zygotic Transition. G3 (Bethesda, Md.). PMID 27591754 DOI: 10.1534/G3.116.034199  0.479
2016 Jovelin R, Krizus A, Taghizada B, Gray JC, Phillips PC, Claycomb JM, Cutter AD. Comparative genomic analysis of upstream miRNA regulatory motifs in Caenorhabditis. Rna (New York, N.Y.). PMID 27140965 DOI: 10.1261/Rna.055392.115  0.358
2015 Tu S, Wu MZ, Wang J, Cutter AD, Weng Z, Claycomb JM. Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes. Nucleic Acids Research. 43: 208-24. PMID 25510497 DOI: 10.1093/Nar/Gku1308  0.84
2014 Youngman EM, Claycomb JM. From early lessons to new frontiers: the worm as a treasure trove of small RNA biology. Frontiers in Genetics. 5: 416. PMID 25505902 DOI: 10.3389/Fgene.2014.00416  0.677
2014 Wedeles CJ, Wu MZ, Claycomb JM. Silent no more: Endogenous small RNA pathways promote gene expression. Worm. 3: e28641. PMID 25254148 DOI: 10.4161/worm.28641  0.815
2014 Claycomb JM. Ancient endo-siRNA pathways reveal new tricks. Current Biology : Cb. 24: R703-15. PMID 25093565 DOI: 10.1016/J.Cub.2014.06.009  0.643
2014 Mansouri S, Pan Q, Blencowe BJ, Claycomb JM, Frappier L. Epstein-Barr virus EBNA1 protein regulates viral latency through effects on let-7 microRNA and dicer. Journal of Virology. 88: 11166-77. PMID 25031339 DOI: 10.1128/Jvi.01785-14  0.323
2014 Claycomb JM. Emerging from the clouds: Vasa helicase sheds light on piRNA amplification. Developmental Cell. 29: 632-4. PMID 24960691 DOI: 10.1016/J.Devcel.2014.06.009  0.516
2013 Wedeles CJ, Wu MZ, Claycomb JM. Protection of germline gene expression by the C. elegans Argonaute CSR-1. Developmental Cell. 27: 664-71. PMID 24360783 DOI: 10.1016/J.Devcel.2013.11.016  0.811
2013 Wedeles CJ, Wu MZ, Claycomb JM. A multitasking Argonaute: exploring the many facets of C. elegans CSR-1. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 573-86. PMID 24178449 DOI: 10.1007/S10577-013-9383-7  0.834
2012 Claycomb JM. Caenorhabditis elegans small RNA pathways make their mark on chromatin. Dna and Cell Biology. 31: S17-33. PMID 23046453 DOI: 10.1089/Dna.2012.1611  0.675
2011 Gu W, Claycomb JM, Batista PJ, Mello CC, Conte D. Cloning Argonaute-associated small RNAs from Caenorhabditis elegans. Methods in Molecular Biology (Clifton, N.J.). 725: 251-80. PMID 21528459 DOI: 10.1007/978-1-61779-046-1_17  0.857
2010 Conine CC, Batista PJ, Gu W, Claycomb JM, Chaves DA, Shirayama M, Mello CC. Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 107: 3588-93. PMID 20133686 DOI: 10.1073/Pnas.0911685107  0.853
2010 Vasale JJ, Gu W, Thivierge C, Batista PJ, Claycomb JM, Youngman EM, Duchaine TF, Mello CC, Conte D. Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway. Proceedings of the National Academy of Sciences of the United States of America. 107: 3582-7. PMID 20133583 DOI: 10.1073/Pnas.0911908107  0.859
2009 van Wolfswinkel JC, Claycomb JM, Batista PJ, Mello CC, Berezikov E, Ketting RF. CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs. Cell. 139: 135-48. PMID 19804759 DOI: 10.1016/J.Cell.2009.09.012  0.766
2009 Claycomb JM, Batista PJ, Pang KM, Gu W, Vasale JJ, van Wolfswinkel JC, Chaves DA, Shirayama M, Mitani S, Ketting RF, Conte D, Mello CC. The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation. Cell. 139: 123-34. PMID 19804758 DOI: 10.1016/J.Cell.2009.09.014  0.83
2009 Gu W, Shirayama M, Conte D, Vasale J, Batista PJ, Claycomb JM, Moresco JJ, Youngman EM, Keys J, Stoltz MJ, Chen CC, Chaves DA, Duan S, Kasschau KD, Fahlgren N, et al. Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline. Molecular Cell. 36: 231-44. PMID 19800275 DOI: 10.1016/J.Molcel.2009.09.020  0.857
2008 Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D, Luo S, Schroth GP, Carrington JC, Bartel DP, et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Molecular Cell. 31: 67-78. PMID 18571452 DOI: 10.1016/J.Molcel.2008.06.002  0.849
2005 Claycomb JM, Orr-Weaver TL. Developmental gene amplification: insights into DNA replication and gene expression. Trends in Genetics : Tig. 21: 149-62. PMID 15734574 DOI: 10.1016/J.Tig.2005.01.009  0.658
2004 Claycomb JM, Benasutti M, Bosco G, Fenger DD, Orr-Weaver TL. Gene amplification as a developmental strategy: isolation of two developmental amplicons in Drosophila. Developmental Cell. 6: 145-55. PMID 14723854 DOI: 10.1016/S1534-5807(03)00398-8  0.712
2002 Claycomb JM, MacAlpine DM, Evans JG, Bell SP, Orr-Weaver TL. Visualization of replication initiation and elongation in Drosophila. The Journal of Cell Biology. 159: 225-36. PMID 12403810 DOI: 10.1083/Jcb.200207046  0.618
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