Niall J. Haslam - Publications

Affiliations: 
University College Dublin, Dublin, County Dublin, Ireland 
Area:
Bioinformatics, computational biology

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Horn H, Haslam N, Jensen LJ. DoReMi: context-based prioritization of linear motif matches. Peerj. 2: e315. PMID 24711967 DOI: 10.7717/peerj.315  1
2013 O'Brien KT, Haslam NJ, Shields DC. SLiMScape: A protein short linear motif analysis plugin for Cytoscape Bmc Bioinformatics. 14. PMID 23855714 DOI: 10.1186/1471-2105-14-224  1
2013 Mooney C, Haslam NJ, Holton TA, Pollastri G, Shields DC. PeptideLocator: prediction of bioactive peptides in protein sequences. Bioinformatics (Oxford, England). 29: 1120-6. PMID 23505299 DOI: 10.1093/bioinformatics/btt103  1
2012 Mooney C, Haslam NJ, Pollastri G, Shields DC. Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity. Plos One. 7: e45012. PMID 23056189 DOI: 10.1371/journal.pone.0045012  1
2012 Haslam NJ, Shields DC. Peptide-binding domains: Are limp handshakes safest? Science Signaling. 5. PMID 23012652 DOI: 10.1126/scisignal.2003372  1
2012 Haslam NJ, Shields DC. Profile-based short linear protein motif discovery Bmc Bioinformatics. 13. PMID 22607209 DOI: 10.1186/1471-2105-13-104  1
2012 Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, ... ... Haslam N, et al. ELM--the database of eukaryotic linear motifs. Nucleic Acids Research. 40: D242-51. PMID 22110040 DOI: 10.1093/nar/gkr1064  1
2012 Mooney C, Pollastri G, Shields DC, Haslam NJ. Prediction of short linear protein binding regions. Journal of Molecular Biology. 415: 193-204. PMID 22079048 DOI: 10.1016/j.jmb.2011.10.025  1
2011 Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMSearch 2.0: biological context for short linear motifs in proteins. Nucleic Acids Research. 39: W56-60. PMID 21622654 DOI: 10.1093/nar/gkr402  1
2010 Bourbeillon J, Orchard S, Benhar I, Borrebaeck C, de Daruvar A, Dübel S, Frank R, Gibson F, Gloriam D, Haslam N, Hiltker T, Humphrey-Smith I, Hust M, Juncker D, Koegl M, et al. Minimum information about a protein affinity reagent (MIAPAR). Nature Biotechnology. 28: 650-3. PMID 20622827 DOI: 10.1038/nbt0710-650  1
2010 Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs. Nucleic Acids Research. 38: W534-9. PMID 20497999 DOI: 10.1093/nar/gkq440  1
2010 Haslam NJ, Gibson TJ. EpiC: an open resource for exploring epitopes to aid antibody-based experiments. Journal of Proteome Research. 9: 3759-63. PMID 20496950 DOI: 10.1021/pr100029f  1
2010 Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, et al. ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research. 38: D167-80. PMID 19920119 DOI: 10.1093/nar/gkp1016  1
2010 Gloriam DE, Orchard S, Bertinetti D, Björling E, Bongcam-Rudloff E, Borrebaeck CA, Bourbeillon J, Bradbury AR, de Daruvar A, Dübel S, Frank R, Gibson TJ, Gold L, Haslam N, Herberg FW, et al. A community standard format for the representation of protein affinity reagents. Molecular & Cellular Proteomics : McP. 9: 1-10. PMID 19674966 DOI: 10.1074/mcp.M900185-MCP200  1
2010 Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMSearch: A webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6282: 50-61. DOI: 10.1007/978-3-642-16001-1_5  1
2009 Weber G, Haslam N, Essex JW, Neylon C. Thermal equivalence of DNA duplexes for probe design Journal of Physics Condensed Matter. 21. DOI: 10.1088/0953-8984/21/3/034106  1
2009 Haslam N, Gibson T. EpiC: A resource for integrating information and analyses to enable selection of epitopes for antibody based experiments Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5647: 173-181. DOI: 10.1007/978-3-642-02879-3_14  1
2008 Haslam NJ, Whiteford NE, Weber G, Prügel-Bennett A, Essex JW, Neylon C. Optimal probe length varies for targets with high sequence variation: Implications for probe library design for resequencing highly variable genes Plos One. 3. PMID 18563203 DOI: 10.1371/journal.pone.0002500  1
2008 Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ. Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Frontiers in Bioscience : a Journal and Virtual Library. 13: 6580-603. PMID 18508681  1
2006 Weber G, Haslam N, Whiteford N, Prügel-Bennett A, Essex JW, Neylon C. Thermal equivalence of DNA duplexes without calculation of melting temperature Nature Physics. 2: 55-59. DOI: 10.1038/nphys189  1
2005 Whiteford N, Haslam N, Weber G, Prügel-Bennett A, Essex JW, Roach PL, Bradley M, Neylon C. An analysis of the feasibility of short read sequencing. Nucleic Acids Research. 33: e171. PMID 16275781 DOI: 10.1093/nar/gni170  1
2005 Whiteford N, Haslam N, Weber G, Prügel-Bennett A, Essex JW, Roach PL, Bradley M, Neylon C. An analysis of the feasibility of short read sequencing Nucleic Acids Research. 33: 1-6. DOI: 10.1093/nar/gni170  1
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