Paul M. Sharp, PhD - Publications

Affiliations: 
School of Biological Science University of Edinburgh, Edinburgh, Scotland, United Kingdom 
Area:
Genetics

130 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sharp PM, Plenderleith LJ, Hahn BH. Ape Origins of Human Malaria. Annual Review of Microbiology. 74: 39-63. PMID 32905751 DOI: 10.1146/Annurev-Micro-020518-115628  0.325
2019 Plenderleith LJ, Liu W, Learn GH, Loy DE, Speede S, Sanz CM, Morgan DB, Bertolani P, Hart JA, Hart TB, Hahn BH, Sharp PM. Ancient introgression between two ape malaria parasite species. Genome Biology and Evolution. PMID 31697367 DOI: 10.1093/Gbe/Evz244  0.388
2019 Proto WR, Siegel SV, Dankwa S, Liu W, Kemp A, Marsden S, Zenonos ZA, Unwin S, Sharp PM, Wright GJ, Hahn BH, Duraisingh MT, Rayner JC. Adaptation of Plasmodium falciparum to humans involved the loss of an ape-specific erythrocyte invasion ligand. Nature Communications. 10: 4512. PMID 31586047 DOI: 10.1038/S41467-019-12294-3  0.342
2019 Riddell CE, Frederickson-Matika D, Armstrong AC, Elliot M, Forster J, Hedley PE, Morris J, Thorpe P, Cooke DE, Pritchard L, Sharp PM, Green S. Metabarcoding reveals a high diversity of woody host-associated spp. in soils at public gardens and amenity woodlands in Britain. Peerj. 7: e6931. PMID 31143546 DOI: 10.7717/Peerj.6931  0.318
2018 Loy DE, Plenderleith LJ, Sundararaman SA, Liu W, Gruszczyk J, Chen YJ, Trimboli S, Learn GH, MacLean OA, Morgan ALK, Li Y, Avitto AN, Giles J, Calvignac-Spencer S, Sachse A, ... ... Sharp PM, et al. Evolutionary history of human revealed by genome-wide analyses of related ape parasites. Proceedings of the National Academy of Sciences of the United States of America. PMID 30127015 DOI: 10.1073/Pnas.1810053115  0.351
2018 Plenderleith LJ, Liu W, MacLean OA, Li Y, Loy DE, Sundararaman SA, Bibollet-Ruche F, Learn GH, Hahn BH, Sharp PM. Adaptive Evolution of RH5 in Ape Plasmodium species of the Laverania Subgenus. Mbio. 9. PMID 29362238 DOI: 10.1128/Mbio.02237-17  0.338
2017 Liu W, Sherrill-Mix S, Learn GH, Scully EJ, Li Y, Avitto AN, Loy DE, Lauder AP, Sundararaman SA, Plenderleith LJ, Ndjango JN, Georgiev AV, Ahuka-Mundeke S, Peeters M, Bertolani P, ... ... Sharp PM, et al. Wild bonobos host geographically restricted malaria parasites including a putative new Laverania species. Nature Communications. 8: 1635. PMID 29158512 DOI: 10.1038/S41467-017-01798-5  0.302
2017 Barbian HJ, Jackson-Jewett R, Brown CS, Bibollet-Ruche F, Learn GH, Decker T, Kreider EF, Li Y, Denny TN, Sharp PM, Shaw GM, Lifson J, Acosta EP, Saag MS, Bar KJ, et al. Effective treatment of SIVcpz-induced immunodeficiency in a captive western chimpanzee. Retrovirology. 14: 35. PMID 28576126 DOI: 10.1186/S12977-017-0359-0  0.323
2017 Iyer SS, Bibollet-Ruche F, Sherrill-Mix S, Learn GH, Plenderleith L, Smith AG, Barbian HJ, Russell RM, Gondim MV, Bahari CY, Shaw CM, Li Y, Decker T, Haynes BF, Shaw GM, ... Sharp PM, et al. Resistance to type 1 interferons is a major determinant of HIV-1 transmission fitness. Proceedings of the National Academy of Sciences of the United States of America. PMID 28069935 DOI: 10.1073/Pnas.1620144114  0.308
2016 Liu W, Sundararaman SA, Loy DE, Learn GH, Li Y, Plenderleith LJ, Ndjango JN, Speede S, Atencia R, Cox D, Shaw GM, Ayouba A, Peeters M, Rayner JC, Hahn BH, ... Sharp PM, et al. Multigenomic Delineation of Plasmodium Species of the Laverania Subgenus Infecting Wild-living Chimpanzees and Gorillas. Genome Biology and Evolution. PMID 27289102 DOI: 10.1093/Gbe/Evw128  0.359
2016 Nowell RW, Laue BE, Sharp PM, Green S. Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen Pseudomonas syringae. Molecular Plant Pathology. PMID 27145446 DOI: 10.1111/Mpp.12423  0.358
2016 Sundararaman SA, Plenderleith LJ, Liu W, Loy DE, Learn GH, Li Y, Shaw KS, Ayouba A, Peeters M, Speede S, Shaw GM, Bushman FD, Brisson D, Rayner JC, Sharp PM, et al. Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria. Nature Communications. 7: 11078. PMID 27002652 DOI: 10.1038/Ncomms11078  0.356
2015 Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. Ape parasite origins of human malaria virulence genes. Nature Communications. 6: 8368. PMID 26456841 DOI: 10.1038/Ncomms9368  0.364
2015 D'arc M, Ayouba A, Esteban A, Learn GH, Boué V, Liegeois F, Etienne L, Tagg N, Leendertz FH, Boesch C, Madinda NF, Robbins MM, Gray M, Cournil A, Ooms M, ... ... Sharp PM, et al. Origin of the HIV-1 group O epidemic in western lowland gorillas. Proceedings of the National Academy of Sciences of the United States of America. 112: E1343-52. PMID 25733890 DOI: 10.1073/Pnas.1502022112  0.339
2014 Kluge SF, Mack K, Iyer SS, Pujol FM, Heigele A, Learn GH, Usmani SM, Sauter D, Joas S, Hotter D, Bibollet-Ruche F, Plenderleith LJ, Peeters M, Geyer M, Sharp PM, et al. Nef proteins of epidemic HIV-1 group O strains antagonize human tetherin. Cell Host & Microbe. 16: 639-50. PMID 25525794 DOI: 10.1016/J.Chom.2014.10.002  0.31
2014 Liu W, Li Y, Shaw KS, Learn GH, Plenderleith LJ, Malenke JA, Sundararaman SA, Ramirez MA, Crystal PA, Smith AG, Bibollet-Ruche F, Ayouba A, Locatelli S, Esteban A, Mouacha F, ... ... Sharp PM, et al. African origin of the malaria parasite Plasmodium vivax. Nature Communications. 5: 3346. PMID 24557500 DOI: 10.1038/Ncomms4346  0.309
2013 Etienne L, Hahn BH, Sharp PM, Matsen FA, Emerman M. Gene loss and adaptation to hominids underlie the ancient origin of HIV-1. Cell Host & Microbe. 14: 85-92. PMID 23870316 DOI: 10.1016/J.Chom.2013.06.002  0.402
2013 Sharp PM, Rayner JC, Hahn BH. Evolution. Great apes and zoonoses. Science (New York, N.Y.). 340: 284-6. PMID 23599472 DOI: 10.1126/Science.1236958  0.342
2013 Sundararaman SA, Liu W, Keele BF, Learn GH, Bittinger K, Mouacha F, Ahuka-Mundeke S, Manske M, Sherrill-Mix S, Li Y, Malenke JA, Delaporte E, Laurent C, Mpoudi Ngole E, Kwiatkowski DP, ... ... Sharp PM, et al. Plasmodium falciparum-like parasites infecting wild apes in southern Cameroon do not represent a recurrent source of human malaria. Proceedings of the National Academy of Sciences of the United States of America. 110: 7020-5. PMID 23569255 DOI: 10.1073/Pnas.1305201110  0.354
2013 Piel AK, Stewart FA, Pintea L, Li Y, Ramirez MA, Loy DE, Crystal PA, Learn GH, Knapp LA, Sharp PM, Hahn BH. The malagarasi river does not form an absolute barrier to chimpanzee movement in Western Tanzania. Plos One. 8: e58965. PMID 23536841 DOI: 10.1371/Journal.Pone.0058965  0.304
2012 Li Y, Ndjango JB, Learn GH, Ramirez MA, Keele BF, Bibollet-Ruche F, Liu W, Easlick JL, Decker JM, Rudicell RS, Inogwabini BI, Ahuka-Mundeke S, Leendertz FH, Reynolds V, Muller MN, ... ... Sharp PM, et al. Eastern chimpanzees, but not bonobos, represent a simian immunodeficiency virus reservoir. Journal of Virology. 86: 10776-91. PMID 22837215 DOI: 10.1128/Jvi.01498-12  0.346
2012 Ayouba A, Mouacha F, Learn GH, Mpoudi-Ngole E, Rayner JC, Sharp PM, Hahn BH, Delaporte E, Peeters M. Ubiquitous Hepatocystis infections, but no evidence of Plasmodium falciparum-like malaria parasites in wild greater spot-nosed monkeys (Cercopithecus nictitans). International Journal For Parasitology. 42: 709-13. PMID 22691606 DOI: 10.1016/J.Ijpara.2012.05.004  0.318
2012 Bibollet-Ruche F, Heigele A, Keele BF, Easlick JL, Decker JM, Takehisa J, Learn G, Sharp PM, Hahn BH, Kirchhoff F. Efficient SIVcpz replication in human lymphoid tissue requires viral matrix protein adaptation. The Journal of Clinical Investigation. 122: 1644-52. PMID 22505456 DOI: 10.1172/Jci61429  0.345
2011 Sharp PM, Hahn BH. Origins of HIV and the AIDS pandemic. Cold Spring Harbor Perspectives in Medicine. 1: a006841. PMID 22229120 DOI: 10.1101/Cshperspect.A006841  0.336
2011 Culleton R, Coban C, Zeyrek FY, Cravo P, Kaneko A, Randrianarivelojosia M, Andrianaranjaka V, Kano S, Farnert A, Arez AP, Sharp PM, Carter R, Tanabe K. The origins of African Plasmodium vivax; insights from mitochondrial genome sequencing. Plos One. 6: e29137. PMID 22195007 DOI: 10.1371/Journal.Pone.0029137  0.327
2011 Sharp PM, Liu W, Learn GH, Rayner JC, Peeters M, Hahn BH. Source of the human malaria parasite Plasmodium falciparum. Proceedings of the National Academy of Sciences of the United States of America. 108: E744-5. PMID 21903922 DOI: 10.1073/Pnas.1112134108  0.305
2011 Rudicell RS, Piel AK, Stewart F, Moore DL, Learn GH, Li Y, Takehisa J, Pintea L, Shaw GM, Moore J, Sharp PM, Hahn BH. High prevalence of simian immunodeficiency virus infection in a community of savanna chimpanzees. Journal of Virology. 85: 9918-28. PMID 21775446 DOI: 10.1128/Jvi.05475-11  0.324
2011 Brown RJ, Peters PJ, Caron C, Gonzalez-Perez MP, Stones L, Ankghuambom C, Pondei K, McClure CP, Alemnji G, Taylor S, Sharp PM, Clapham PR, Ball JK. Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitors. Journal of Virology. 85: 6024-37. PMID 21471230 DOI: 10.1128/Jvi.00131-11  0.36
2011 Rayner JC, Liu W, Peeters M, Sharp PM, Hahn BH. A plethora of Plasmodium species in wild apes: a source of human infection? Trends in Parasitology. 27: 222-9. PMID 21354860 DOI: 10.1016/J.Pt.2011.01.006  0.308
2011 Emery LR, Sharp PM. Impact of translational selection on codon usage bias in the archaeon Methanococcus maripaludis. Biology Letters. 7: 131-5. PMID 20810428 DOI: 10.1098/Rsbl.2010.0620  0.375
2010 Liu W, Li Y, Peeters M, Rayner J, Sharp P, Shaw G, Hahn B. Single genome amplification and direct amplicon sequencing of Plasmodium spp. DNA from ape fecal specimens. Protocol Exchange. 2010. PMID 25221670 DOI: 10.1038/Nprot.2010.156  0.391
2010 Liu W, Li Y, Learn GH, Rudicell RS, Robertson JD, Keele BF, Ndjango JB, Sanz CM, Morgan DB, Locatelli S, Gonder MK, Kranzusch PJ, Walsh PD, Delaporte E, Mpoudi-Ngole E, ... ... Sharp PM, et al. Origin of the human malaria parasite Plasmodium falciparum in gorillas. Nature. 467: 420-5. PMID 20864995 DOI: 10.1038/Nature09442  0.362
2010 Sharp PM, Hahn BH. The evolution of HIV-1 and the origin of AIDS. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2487-94. PMID 20643738 DOI: 10.1098/Rstb.2010.0031  0.362
2010 Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, Arnold D, Cottrell JE, Bridgett S, Blaxter M, Huitema E, Thwaites R, Sharp PM, Jackson RW, Kamoun S. Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. Plos One. 5: e10224. PMID 20419105 DOI: 10.1371/Journal.Pone.0010224  0.368
2010 Sharp PM, Emery LR, Zeng K. Forces that influence the evolution of codon bias. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1203-12. PMID 20308095 DOI: 10.1098/Rstb.2009.0305  0.361
2009 Sauter D, Schindler M, Specht A, Landford WN, Münch J, Kim KA, Votteler J, Schubert U, Bibollet-Ruche F, Keele BF, Takehisa J, Ogando Y, Ochsenbauer C, Kappes JC, Ayouba A, ... ... Sharp PM, et al. Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains. Cell Host & Microbe. 6: 409-21. PMID 19917496 DOI: 10.1016/J.Chom.2009.10.004  0.315
2009 Keele BF, Jones JH, Terio KA, Estes JD, Rudicell RS, Wilson ML, Li Y, Learn GH, Beasley TM, Schumacher-Stankey J, Wroblewski E, Mosser A, Raphael J, Kamenya S, Lonsdorf EV, ... ... Sharp PM, et al. Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz. Nature. 460: 515-9. PMID 19626114 DOI: 10.1038/Nature08200  0.329
2009 Takehisa J, Kraus MH, Ayouba A, Bailes E, Van Heuverswyn F, Decker JM, Li Y, Rudicell RS, Learn GH, Neel C, Ngole EM, Shaw GM, Peeters M, Sharp PM, Hahn BH. Origin and biology of simian immunodeficiency virus in wild-living western gorillas. Journal of Virology. 83: 1635-48. PMID 19073717 DOI: 10.1128/Jvi.02311-08  0.384
2008 Liu W, Worobey M, Li Y, Keele BF, Bibollet-Ruche F, Guo Y, Goepfert PA, Santiago ML, Ndjango JB, Neel C, Clifford SL, Sanz C, Kamenya S, Wilson ML, Pusey AE, ... ... Sharp PM, et al. Molecular ecology and natural history of simian foamy virus infection in wild-living chimpanzees. Plos Pathogens. 4: e1000097. PMID 18604273 DOI: 10.1371/Journal.Ppat.1000097  0.365
2008 Salazar-Gonzalez JF, Bailes E, Pham KT, Salazar MG, Guffey MB, Keele BF, Derdeyn CA, Farmer P, Hunter E, Allen S, Manigart O, Mulenga J, Anderson JA, Swanstrom R, Haynes BF, ... ... Sharp PM, et al. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing. Journal of Virology. 82: 3952-70. PMID 18256145 DOI: 10.1128/Jvi.02660-07  0.395
2007 Heuverswyn FV, Li Y, Bailes E, Neel C, Lafay B, Keele BF, Shaw KS, Takehisa J, Kraus MH, Loul S, Butel C, Liegeois F, Yangda B, Sharp PM, Mpoudi-Ngole E, et al. Genetic diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon Virology. 368: 155-171. PMID 17651775 DOI: 10.1016/J.Virol.2007.06.018  0.387
2007 Wain LV, Bailes E, Bibollet-Ruche F, Decker JM, Keele BF, Van Heuverswyn F, Li Y, Takehisa J, Ngole EM, Shaw GM, Peeters M, Hahn BH, Sharp PM. Adaptation of HIV-1 to Its Human Host Molecular Biology and Evolution. 24: 1853-1860. PMID 17545188 DOI: 10.1093/Molbev/Msm110  0.367
2007 Takehisa J, Kraus MH, Decker JM, Li Y, Keele BF, Bibollet-Ruche F, Zammit KP, Weng Z, Santiago ML, Kamenya S, Wilson ML, Pusey AE, Bailes E, Sharp PM, Shaw GM, et al. Generation of infectious molecular clones of simian immunodeficiency virus from fecal consensus sequences of wild chimpanzees. Journal of Virology. 81: 7463-75. PMID 17494082 DOI: 10.1128/Jvi.00551-07  0.398
2007 Aghokeng AF, Bailes E, Loul S, Courgnaud V, Mpoudi-Ngolle E, Sharp PM, Delaporte E, Peeters M. Full-length sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages Virology. 360: 407-418. PMID 17156809 DOI: 10.1016/J.Virol.2006.10.048  0.386
2007 Henry I, Sharp PM. Predicting gene expression level from codon usage bias Molecular Biology and Evolution. 24: 10-12. PMID 17038449 DOI: 10.1093/Molbev/Msl148  0.342
2006 Van Heuverswyn F, Li Y, Neel C, Bailes E, Keele BF, Liu W, Loul S, Butel C, Liegeois F, Bienvenue Y, Ngolle EM, Sharp PM, Shaw GM, Delaporte E, Hahn BH, et al. Human immunodeficiency viruses: SIV infection in wild gorillas Nature. 444: 164. PMID 17093443 DOI: 10.1038/444164A  0.322
2006 Schindler M, Münch J, Kutsch O, Li H, Santiago ML, Bibollet-Ruche F, Müller-Trutwin MC, Novembre FJ, Peeters M, Courgnaud V, Bailes E, Roques P, Sodora DL, Silvestri G, Sharp PM, et al. Nef-mediated suppression of T cell activation was lost in a lentiviral lineage that gave rise to HIV-1. Cell. 125: 1055-67. PMID 16777597 DOI: 10.1016/J.Cell.2006.04.033  0.309
2006 Keele BF, Van Heuverswyn F, Li Y, Bailes E, Takehisa J, Santiago ML, Bibollet-Ruche F, Chen Y, Wain LV, Liegeois F, Loul S, Ngole EM, Bienvenue Y, Delaporte E, Brookfield JF, ... Sharp PM, et al. Chimpanzee reservoirs of pandemic and nonpandemic HIV-1. Science (New York, N.Y.). 313: 523-6. PMID 16728595 DOI: 10.1126/Science.1126531  0.338
2006 Wilson LA, Sharp PM. Enterobacterial repetitive intergenic consensus (ERIC) sequences in Escherichia coli: Evolution and implications for ERIC-PCR. Molecular Biology and Evolution. 23: 1156-68. PMID 16533821 DOI: 10.1093/Molbev/Msj125  0.556
2005 Santiago ML, Range F, Keele BF, Li Y, Bailes E, Bibollet-Ruche F, Fruteau C, Noë R, Peeters M, Brookfield JF, Shaw GM, Sharp PM, Hahn BH. Simian immunodeficiency virus infection in free-ranging sooty mangabeys (Cercocebus atys atys) from the Taï Forest, Côte d'Ivoire: implications for the origin of epidemic human immunodeficiency virus type 2. Journal of Virology. 79: 12515-27. PMID 16160179 DOI: 10.1128/Jvi.79.19.12515-12527.2005  0.363
2005 Sharp PM, Shaw GM, Hahn BH. Simian immunodeficiency virus infection of chimpanzees Journal of Virology. 79: 3891-3902. PMID 15767392 DOI: 10.1128/Jvi.79.7.3891-3902.2005  0.311
2005 Nerrienet E, Santiago ML, Foupouapouognigni Y, Bailes E, Mundy NI, Njinku B, Kfutwah A, Muller-Trutwin MC, Barre-Sinoussi F, Shaw GM, Sharp PM, Hahn BH, Ayouba A. Simian immunodeficiency virus infection in wild-caught chimpanzees from Cameroon Journal of Virology. 79: 1312-1319. PMID 15613358 DOI: 10.1128/Jvi.79.2.1312-1319.2005  0.361
2004 Bibollet-Ruche F, Gao F, Bailes E, Saragosti S, Delaporte E, Peeters M, Shaw GM, Hahn BH, Sharp PM. Complete genome analysis of one of the earliest SIVcpzPtt strains from gabon (SIVcpzGAB2) Aids Research and Human Retroviruses. 20: 1377-1381. PMID 15650433 DOI: 10.1089/Aid.2004.20.1377  0.382
2004 Chen Y, Sharp PM, Fowkes M, Kocher O, Joseph JT, Koralnik IJ. Analysis of 15 novel full-length BK virus sequences from three individuals: evidence of a high intra-strain genetic diversity. The Journal of General Virology. 85: 2651-63. PMID 15302959 DOI: 10.1099/Vir.0.79920-0  0.382
2004 Bibollet-Ruche F, Bailes E, Gao F, Pourrut X, Barlow KL, Clewley JP, Mwenda JM, Langat DK, Chege GK, McClure HM, Mpoudi-Ngole E, Delaporte E, Peeters M, Shaw GM, Sharp PM, et al. New simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): Evidence for a Cercopithecus monkey virus clade Journal of Virology. 78: 7748-7762. PMID 15220449 DOI: 10.1128/Jvi.78.14.7748-7762.2004  0.398
2004 Worobey M, Santiago ML, Keele BF, Ndjango JBN, Joy JB, Labama BL, Dhed'a BD, Rambaut A, Sharp PM, Shaw GM, Hahn BH. Contaminated polio vaccine theory refuted Nature. 428: 820. PMID 15103367 DOI: 10.1038/428820A  0.311
2003 Santiago ML, Bibollet-Ruche F, Gross-Camp N, Majewski AC, Masozera M, Munanura I, Kaplin BA, Sharp PM, Shaw GM, Hahn BH. Noninvasive Detection of Simian Immunodeficiency Virus Infection in a Wild-Living L'Hoest's Monkey (Cercopithecus lhoesti) Aids Research and Human Retroviruses. 19: 1163-1166. PMID 14717118 DOI: 10.1089/088922203771881275  0.325
2003 Van Gent D, Sharp P, Morgan K, Kalsheker N. Serpins: Structure, function and molecular evolution International Journal of Biochemistry and Cell Biology. 35: 1536-1547. PMID 12824063 DOI: 10.1016/S1357-2725(03)00134-1  0.325
2003 Bailes E, Gao F, Bibollet-Ruche F, Courgnaud V, Peeters M, Marx PA, Hahn BH, Sharp PM. Hybrid origin of SIV in chimpanzees Science. 300: 1713. PMID 12805540 DOI: 10.1126/Science.1080657  0.351
2003 Santiago ML, Lukasik M, Kamenya S, Li Y, Bibollet-Ruche F, Bailes E, Muller MN, Emery M, Goldenberg DA, Lwanga JS, Ayouba A, Nerrienet E, McClure HM, Heeney JL, Watts DP, ... ... Sharp PM, et al. Foci of endemic simian immunodeficiency virus infection in wild-living eastern chimpanzees (Pan troglodytes schweinfurthii). Journal of Virology. 77: 7545-62. PMID 12805455 DOI: 10.1128/Jvi.77.13.7545-7562.2003  0.322
2003 Santiago ML, Bibollet-Ruche F, Bailes E, Kamenya S, Muller MN, Lukasik M, Pusey AE, Collins DA, Wrangham RW, Goodall J, Shaw GM, Sharp PM, Hahn BH. Amplification of a complete simian immunodeficiency virus genome from fecal RNA of a wild chimpanzee. Journal of Virology. 77: 2233-42. PMID 12525658 DOI: 10.1128/Jvi.77.3.2233-2242.2003  0.401
2002 Santiago ML, Rodenburg CM, Kamenya S, Bibollet-Ruche F, Gao F, Bailes E, Meleth S, Soong SJ, Kilby JM, Moldoveanu Z, Fahey B, Muller MN, Ayouba A, Nerrienet E, McClure HM, ... ... Sharp PM, et al. SIVcpz in wild chimpanzees. Science (New York, N.Y.). 295: 465. PMID 11799233 DOI: 10.1126/Science.295.5554.465  0.317
2001 Sharp PM, Bailes E, Chaudhuri RR, Rodenburg CM, Santiago MO, Hahn BH. The origins of acquired immune deficiency syndrome viruses: Where and when? Philosophical Transactions of the Royal Society B: Biological Sciences. 356: 867-876. PMID 11405934 DOI: 10.1098/Rstb.2001.0863  0.342
2000 Sharp PM, Bailes E, Gao F, Beer BE, Hirsch VM, Hahn BH. Origins and evolution of AIDS viruses: Estimating the time-scale Biochemical Society Transactions. 28: 275-282. PMID 10816142 DOI: 10.1042/Bst0280275  0.357
2000 Robertson DL, Anderson JP, Bradac JA, Carr JK, Foley B, Funkhouser RK, Gao F, Hahn BH, Kalish ML, Kuiken C, Learn GH, Leitner T, McCutchan F, Osmanov S, Peeters M, ... ... Sharp PM, et al. HIV-1 nomenclature proposal. Science (New York, N.Y.). 288: 55-6. PMID 10766634 DOI: 10.1126/Science.288.5463.55D  0.306
2000 Beer BE, Bailes E, Dapolito G, Campbell BJ, Goeken RM, Axthelm MK, Markham PD, Bernard J, Zagury D, Franchini G, Sharp PM, Hirsch VM. Patterns of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir Journal of Virology. 74: 3892-3898. PMID 10729165 DOI: 10.1128/Jvi.74.8.3892-3898.2000  0.363
2000 Averof M, Rokas A, Wolfe KH, Sharp PM. Evidence for a high frequency of simultaneous double-nucleotide substitutions. Science (New York, N.Y.). 287: 1283-6. PMID 10678838 DOI: 10.1126/Science.287.5456.1283  0.576
2000 Hahn BH, Shaw GM, De Cock KM, Sharp PM. AIDS as a zoonosis: Scientific and public health implications Science. 287: 607-614. PMID 10649986 DOI: 10.1126/Science.287.5453.607  0.317
1999 Matassi G, Sharp PM, Gautier C. Chromosomal location effects on gene sequence evolution in mammals Current Biology. 9: 786-791. PMID 10469563 DOI: 10.1016/S0960-9822(99)80361-3  0.388
1999 Beer BE, Bailes E, Goeken R, Dapolito G, Coulibaly C, Norley SG, Kurth R, Gautier JP, Gautier-Hion A, Vallet D, Sharp PM, Hirsch VM. Simian immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): Evidence for host-dependent evolution of SIV within the C. lhoesti superspecies Journal of Virology. 73: 7734-7744. PMID 10438863 DOI: 10.1128/Jvi.73.9.7734-7744.1999  0.347
1999 Ball JK, Curran R, Berridge S, Grabowska AM, Jameson CL, Thomson BJ, Irving WL, Sharp PM. TT virus sequence heterogeneity in vivo: Evidence for co-infection with multiple genetic types Journal of General Virology. 80: 1759-1768. PMID 10423145 DOI: 10.1099/0022-1317-80-7-1759  0.343
1999 Sharp PM, Bailes E, Robertson DL, Gao F, Hahn BH. Origins and evolution of AIDS viruses. The Biological Bulletin. 196: 338-42. PMID 10390833 DOI: 10.2307/1542965  0.373
1999 Bradnam KR, Seoighe C, Sharp PM, Wolfe KH. G+C content variation along and among Saccharomyces cerevisiae chromosomes. Molecular Biology and Evolution. 16: 666-75. PMID 10335660 DOI: 10.1093/Oxfordjournals.Molbev.A026149  0.747
1999 Lafay B, Lloyd AT, McLean MJ, Devine KM, Sharp PM, Wolfe KH. Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases. Nucleic Acids Research. 27: 1642-9. PMID 10075995 DOI: 10.1093/Nar/27.7.1642  0.612
1999 Gao F, Balles E, Robertson DL, Chen Y, Rodenburg CM, Michael SF, Cummins LB, Arthur LO, Peeters M, Shaw GM, Sharp PM, Hahn BH. Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes Nature. 397: 436-441. PMID 9989410 DOI: 10.1038/17130  0.343
1999 Hirsch VM, Campbell BJ, Bailes E, Goeken R, Brown C, Elkins WR, Axthelm M, Murphey-Corb M, Sharp PM. Characterization of a novel simian immunodeficiency virus (SIV) from L'Hoest monkeys (Cercopithecus l'hoesti): Implications for the origins of SIVmnd and other primate lentiviruses Journal of Virology. 73: 1036-1045. PMID 9882304 DOI: 10.1128/Jvi.73.2.1036-1045.1999  0.347
1998 Gao F, Robertson DL, Carruthers CD, Li Y, Bailes E, Kostrikis LG, Salminen MO, Bibollet-Ruche F, Peeters M, Ho DD, Shaw GM, Sharp PM, Hahn BH. An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I) Journal of Virology. 72: 10234-10241. PMID 9811767 DOI: 10.1128/Jvi.72.12.10234-10241.1998  0.407
1998 Gao F, Robertson DL, Carruthers CD, Morrison SG, Jian B, Chen Y, Barré-Sinoussi F, Girard M, Srinivasan A, Abimiku AG, Shaw GM, Sharp PM, Hahn BH. A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1 Journal of Virology. 72: 5680-5698. PMID 9621027 DOI: 10.1128/Jvi.72.7.5680-5698.1998  0.413
1998 Zhu T, Korber BT, Nahmias AJ, Hooper E, Sharp PM, Ho DD. An African HIV-1 sequence from 1959 and implications for the of the epidemic Nature. 391: 594-597. PMID 9468138 DOI: 10.1038/35400  0.359
1997 Salminen MO, Carr JK, Robertson DL, Hegerich P, Gotte D, Koch C, Sanders-Buell E, Gao F, Sharp PM, Hahn BH, Burke DS, McCutchan FE. Evolution and probable transmission of intersubtype recombinant human immunodeficiency virus type 1 in a Zambian couple Journal of Virology. 71: 2647-2655. PMID 9060617 DOI: 10.1128/Jvi.71.4.2647-2655.1997  0.363
1996 Sharp PM, Bailes E, Stevenson M, Emerman M, Hahn BH. Gene acquisition in HIV and SIV. Nature. 383: 586-7. PMID 8857532 DOI: 10.1038/383586A0  0.331
1996 Gao F, Robertson DL, Morrison SG, Hui H, Craig S, Decker J, Fultz PN, Girard M, Shaw GM, Hahn BH, Sharp PM. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin Journal of Virology. 70: 7013-7029. PMID 8794346 DOI: 10.1128/Jvi.70.10.7013-7029.1996  0.372
1996 Gao F, Morrison SG, Robertson DL, Thornton CL, Craig S, Karlsson G, Sodroski J, Morgado M, Galvao-Castro B, von Briesen H, Beddows S, Weber J, Sharp PM, Shaw GM, Hahn BH. Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization. Journal of Virology. 70: 1651-67. PMID 8627686 DOI: 10.1128/Jvi.70.3.1651-1667.1996  0.418
1996 Biggar RJ, Taylor ME, Neel JV, Hjelle B, Levine PH, Black FL, Shaw GM, Sharp PM, Hahn BH. Genetic variants of human T-lymphotrophic virus type II in American Indian groups. Virology. 216: 165-73. PMID 8614983 DOI: 10.1006/Viro.1996.0043  0.324
1995 Sharp PM, Robertson DL, Hahn BH. Cross-species transmission and recombination of 'AIDS' viruses. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 349: 41-7. PMID 8748018 DOI: 10.1098/Rstb.1995.0089  0.375
1995 Sharp PM, Averof M, Lloyd AT, Matassi G, Peden JF. DNA sequence evolution: the sounds of silence. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 349: 241-7. PMID 8577834 DOI: 10.1098/Rstb.1995.0108  0.396
1995 Robertson DL, Hahn BH, Sharp PM. Recombination in AIDS viruses. Journal of Molecular Evolution. 40: 249-59. PMID 7723052 DOI: 10.1007/Bf00163230  0.361
1994 Loftus RT, MacHugh DE, Bradley DG, Sharp PM, Cunningham P. Evidence for two independent domestications of cattle Proceedings of the National Academy of Sciences of the United States of America. 91: 2757-2761. PMID 8146187 DOI: 10.1073/Pnas.91.7.2757  0.36
1994 Jin MJ, Hui H, Robertson DL, Müller MC, Barré-Sinoussi F, Hirsch VM, Allan JS, Shaw GM, Sharp PM, Hahn BH. Mosaic genome structure of simian immunodeficiency virus from West African green monkeys Embo Journal. 13: 2936-2947. PMID 8026477 DOI: 10.1002/J.1460-2075.1994.Tb06588.X  0.407
1994 Jin MJ, Rogers J, Phillips-Conroy JE, Allan JS, Desrosiers RC, Shaw GM, Sharp PM, Hahn BH. Infection of a yellow baboon with simian immunodeficiency virus from African green monkeys: evidence for cross-species transmission in the wild. Journal of Virology. 68: 8454-60. PMID 7966642 DOI: 10.1128/Jvi.68.12.8454-8460.1994  0.392
1994 Gao F, Yue L, Hill SC, Robertson DL, Graves AH, Saag MS, Shaw GM, Sharp PM, Hahn BH. HIV-1 sequence subtype D in the United States Aids Research and Human Retroviruses. 10: 625-627. PMID 7917525 DOI: 10.1089/Aid.1994.10.625  0.305
1994 Gao F, Yue L, Craig S, Thornton CL, Robertson DL, McCutchan FE, Bradac JA, Sharp PM, Hahn BH, Osmanov S, Belsey EM, Heyward W, Esparza J, Galvao-Castro B, Van de Perre P, et al. Genetic variation of HIV type 1 in four World Organization-sponsored vaccine evaluation sites: Generation of functional envelope (glycoprotein 160) clones representative of sequence subtypes A, B, C, and E Aids Research and Human Retroviruses. 10: 1359-1368. PMID 7888189 DOI: 10.1089/Aid.1994.10.1359  0.362
1993 Ghosh SK, Fultz PN, Keddie E, Saag MS, Sharp PM, Hahn BH, Shaw GM. A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocyes Virology. 194: 858-864. PMID 8503191 DOI: 10.1006/Viro.1993.1331  0.359
1993 Gao F, Yue L, Sharp PM, Hahn BH. Genetic typing of HIV-2 from a Senegalese/German heterosexual transmission Aids Research and Human Retroviruses. 9: 703-704. PMID 8369175 DOI: 10.1089/Aid.1993.9.703  0.366
1993 Sharp PM, Wolfe KH. Identification of a Candida utilis gene encoding ribosomal protein L7: evidence for two divergent subclasses of the eukaryotic ribosomal protein L7 family. Nucleic Acids Research. 21: 3577. PMID 8346035 DOI: 10.1093/Nar/21.15.3577  0.534
1993 Wolfe KH, Sharp PM. Mammalian gene evolution: nucleotide sequence divergence between mouse and rat. Journal of Molecular Evolution. 37: 441-56. PMID 8308912 DOI: 10.1007/Bf00178874  0.627
1992 Gao F, Yue L, White AT, Pappas PG, Barchue J, Hanson AP, Greene BM, Sharp PM, Shaw GM, Hahn BH. Human infection by genetically diverse SIVSM-related HIV-2 in West Africa Nature. 358: 495-499. PMID 1641038 DOI: 10.1038/358495A0  0.366
1992 Shields DC, Higgins DG, Sharp PM. GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. Computer Applications in the Biosciences : Cabios. 8: 521-3. PMID 1422886 DOI: 10.1093/Bioinformatics/8.5.521  0.639
1992 Li Y, Hui H, Burgess CJ, Price RW, Sharp PM, Hahn BH, Shaw GM. Complete nucleotide sequence, genome organization, and biological properties of human immunodeficiency virus type 1 in vivo: evidence for limited defectiveness and complementation. Journal of Virology. 66: 6587-600. PMID 1404605 DOI: 10.1128/Jvi.66.11.6587-6600.1992  0.371
1991 Bulmer M, Wolfe KH, Sharp PM. Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders. Proceedings of the National Academy of Sciences of the United States of America. 88: 5974-8. PMID 2068073 DOI: 10.1073/Pnas.88.14.5974  0.607
1991 Powell R, Higgins DG, Wolff J, Byrnes L, Stack M, Sharp PM, Gannon F. The salmon gene encoding apolipoprotein A-I: cDNA sequence, tissue expression and evolution. Gene. 104: 155-61. PMID 1916288 DOI: 10.1016/0378-1119(91)90245-7  0.566
1991 Hulton CSJ, Higgins CF, Sharp PM. ERIC sequences: A novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria Molecular Microbiology. 5: 825-834. PMID 1713281 DOI: 10.1111/J.1365-2958.1991.Tb00755.X  0.369
1990 Li WH, Gouy M, Sharp PM, O'hUigin C, Yang YW. Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks. Proceedings of the National Academy of Sciences of the United States of America. 87: 6703-7. PMID 2395871 DOI: 10.1073/Pnas.87.17.6703  0.36
1990 Atkins GJ, Daly EA, Sheahan BJ, Higgins DG, Sharp PM. Multiple sclerosis and molecular mimicry. Neuropathology and Applied Neurobiology. 16: 179-80. PMID 1693178 DOI: 10.1111/J.1365-2990.1990.Tb00946.X  0.466
1990 Sharp PM, Higgins DG, Shields DC, Devine KM, Hoch JA. Bacillus Subtilis Gene Sequences Genetics and Biotechnology of Bacilli. 89-98. DOI: 10.1016/B978-0-12-274162-3.50013-X  0.581
1989 Wolfe KH, Sharp PM, Li WH. Mutation rates differ among regions of the mammalian genome. Nature. 337: 283-5. PMID 2911369 DOI: 10.1038/337283A0  0.601
1989 Wolfe KH, Gouy M, Yang YW, Sharp PM, Li WH. Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proceedings of the National Academy of Sciences of the United States of America. 86: 6201-5. PMID 2762323 DOI: 10.1073/Pnas.86.16.6201  0.581
1989 Higgins DG, Sharp PM. Fast and sensitive multiple sequence alignments on a microcomputer. Computer Applications in the Biosciences : Cabios. 5: 151-3. PMID 2720464 DOI: 10.1093/Bioinformatics/5.2.151  0.549
1989 Sharp PM, Shields DC, Wolfe KH, Li WH. Chromosomal location and evolutionary rate variation in enterobacterial genes. Science (New York, N.Y.). 246: 808-10. PMID 2683084 DOI: 10.1126/Science.2683084  0.687
1989 Higgins DG, McConnell DJ, Sharp PM. Malarial proteinase? Nature. 340: 604. PMID 2671749 DOI: 10.1038/340604a0  0.414
1989 Shields DC, Sharp PM. Evidence that mutation patterns vary among Drosophila transposable elements. Journal of Molecular Biology. 207: 843-6. PMID 2547975 DOI: 10.1016/0022-2836(89)90252-0  0.567
1989 Sharp PM, Li WH. On the rate of DNA sequence evolution in Drosophila Journal of Molecular Evolution. 28: 398-402. PMID 2501501 DOI: 10.1007/Bf02603075  0.378
1989 Wolfe KH, Sharp PM, Li WH. Rates of synonymous substitution in plant nuclear genes Journal of Molecular Evolution. 29: 208-211. DOI: 10.1007/Bf02100204  0.571
1989 Li WH, Gouy M, Wolfe KH, Sharp PM. Angiosperm origins [9] Nature. 342: 131-132.  0.486
1988 Li WH, Tanimura M, Sharp PM. Rates and dates of divergence between AIDS virus nucleotide sequences Molecular Biology and Evolution. 5: 313-330. PMID 3405075 DOI: 10.1093/Oxfordjournals.Molbev.A040503  0.38
1988 Higgins DG, Sharp PM. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 73: 237-44. PMID 3243435 DOI: 10.1016/0378-1119(88)90330-7  0.545
1988 Wolfe KH, Sharp PM. Identification of functional open reading frames in chloroplast genomes. Gene. 66: 215-22. PMID 3169573 DOI: 10.1016/0378-1119(88)90358-7  0.614
1988 Shields DC, Sharp PM, Higgins DG, Wright F. "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Molecular Biology and Evolution. 5: 704-16. PMID 3146682 DOI: 10.1093/Oxfordjournals.Molbev.A040525  0.678
1988 Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, Wright F. Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity. Nucleic Acids Research. 16: 8207-11. PMID 3138659 DOI: 10.1093/Nar/16.17.8207  0.731
1987 Sharp PM, Li WH. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications Nucleic Acids Research. 15: 1281-1295. PMID 3547335 DOI: 10.1093/Nar/15.3.1281  0.347
1987 Wolfe KH, Li WH, Sharp PM. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proceedings of the National Academy of Sciences of the United States of America. 84: 9054-8. PMID 3480529 DOI: 10.1073/Pnas.84.24.9054  0.568
1987 Li WH, Wolfe KH, Sourdis J, Sharp PM. Reconstruction of phylogenetic trees and estimation of divergence times under nonconstant rates of evolution. Cold Spring Harbor Symposia On Quantitative Biology. 52: 847-56. PMID 3454293 DOI: 10.1101/Sqb.1987.052.01.092  0.542
1987 Sharp PM, Li WH. The Rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias Molecular Biology and Evolution. 4: 222-230. PMID 3328816 DOI: 10.1093/Oxfordjournals.Molbev.A040443  0.391
1987 Shields DC, Sharp PM. Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Research. 15: 8023-40. PMID 3118331 DOI: 10.1093/Nar/15.19.8023  0.571
1987 Li WH, Tanimura M, Sharp PM. An evaluation of the molecular clock hypothesis using mammalian DNA sequences Journal of Molecular Evolution. 25: 330-342. PMID 3118047 DOI: 10.1007/Bf02603118  0.345
1987 Sharp PM, Li WH. Ubiquitin genes as a paradigm of concerted evolution of tandem repeats Journal of Molecular Evolution. 25: 58-64. PMID 3041010 DOI: 10.1007/Bf02100041  0.404
1987 Sharp PM, Li WH. Molecular evolution of ubiquitin genes Trends in Ecology and Evolution. 2: 328-332. DOI: 10.1016/0169-5347(87)90108-X  0.328
1986 Sharp PM, Li WH. Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons Nucleic Acids Research. 14: 7737-7749. PMID 3534792 DOI: 10.1093/Nar/14.19.7737  0.368
1986 Sharp PM, Li WH. An evolutionary perspective on synonymous codon usage in unicellular organisms Journal of Molecular Evolution. 24: 28-38. PMID 3104616 DOI: 10.1007/Bf02099948  0.37
1985 Sharp PM, Rogers MS, McConnell DJ. Selection pressures on codon usage in the complete genome of bacteriophage T7 Journal of Molecular Evolution. 21: 150-160. PMID 6100189 DOI: 10.1007/Bf02100089  0.381
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