| Year |
Citation |
Score |
| 2023 |
Rosenberg GM, Abskharon R, Boyer DR, Ge P, Sawaya MR, Eisenberg DS. Fibril structures of TFG protein mutants validate the identification of TFG as a disease-related amyloid protein by the IMPAcT method. Pnas Nexus. 2: pgad402. PMID 38077690 DOI: 10.1093/pnasnexus/pgad402 |
0.372 |
|
| 2023 |
Tayeb-Fligelman E, Bowler JT, Tai CE, Sawaya MR, Jiang YX, Garcia G, Griner SL, Cheng X, Salwinski L, Lutter L, Seidler PM, Lu J, Rosenberg GM, Hou K, Abskharon R, ... ... Eisenberg DS, et al. Low complexity domains of the nucleocapsid protein of SARS-CoV-2 form amyloid fibrils. Nature Communications. 14: 2379. PMID 37185252 DOI: 10.1038/s41467-023-37865-3 |
0.303 |
|
| 2023 |
Ryder BD, Boyer DR, Ustyantseva E, Mendoza-Oliva A, Kuska MI, Wydorski PM, Sawaya M, Diamond MI, Eisenberg DS, Kampinga HH, Joachimiak LA. DNAJB8 oligomerization is mediated by an aromatic-rich motif that is dispensable for substrate activity. Biorxiv : the Preprint Server For Biology. PMID 36945632 DOI: 10.1101/2023.03.06.531355 |
0.308 |
|
| 2022 |
Buxbaum JN, Dispenzieri A, Eisenberg DS, Fändrich M, Merlini G, Saraiva MJM, Sekijima Y, Westermark P. Amyloid nomenclature 2022: update, novel proteins, and recommendations by the International Society of Amyloidosis (ISA) Nomenclature Committee. Amyloid : the International Journal of Experimental and Clinical Investigation : the Official Journal of the International Society of Amyloidosis. 1-7. PMID 36420821 DOI: 10.1080/13506129.2022.2147636 |
0.317 |
|
| 2022 |
Bowler JT, Sawaya MR, Boyer DR, Cascio D, Bali M, Eisenberg DS. Micro-electron diffraction structure of the aggregation-driving N-terminus of Drosophila neuronal protein Orb2A reveals amyloid-like β-sheets. The Journal of Biological Chemistry. 102396. PMID 35988647 DOI: 10.1016/j.jbc.2022.102396 |
0.329 |
|
| 2022 |
Murray KA, Hu CJ, Griner SL, Pan H, Bowler JT, Abskharon R, Rosenberg GM, Cheng X, Seidler PM, Eisenberg DS. De novo designed protein inhibitors of amyloid aggregation and seeding. Proceedings of the National Academy of Sciences of the United States of America. 119: e2206240119. PMID 35969734 DOI: 10.1073/pnas.2206240119 |
0.301 |
|
| 2022 |
Murray KA, Evans D, Hughes MP, Sawaya MR, Hu CJ, Houk KN, Eisenberg D. Extended β-Strands Contribute to Reversible Amyloid Formation. Acs Nano. PMID 35132852 DOI: 10.1021/acsnano.1c08043 |
0.447 |
|
| 2021 |
Hughes MP, Goldschmidt L, Eisenberg DS. Prevalence and species distribution of the low-complexity, amyloid-like, reversible, kinked segment (LARKS) structural motif in amyloid-like fibrils. The Journal of Biological Chemistry. 101194. PMID 34537246 DOI: 10.1016/j.jbc.2021.101194 |
0.645 |
|
| 2021 |
Sawaya MR, Hughes MP, Rodriguez JA, Riek R, Eisenberg DS. The expanding amyloid family: Structure, stability, function, and pathogenesis. Cell. 184: 4857-4873. PMID 34534463 DOI: 10.1016/j.cell.2021.08.013 |
0.363 |
|
| 2020 |
Lu J, Cao Q, Hughes MP, Sawaya MR, Boyer DR, Cascio D, Eisenberg DS. CryoEM structure of the low-complexity domain of hnRNPA2 and its conversion to pathogenic amyloid. Nature Communications. 11: 4090. PMID 32796831 DOI: 10.1038/S41467-020-17905-Y |
0.333 |
|
| 2020 |
Glynn C, Sawaya MR, Ge P, Gallagher-Jones M, Short CW, Bowman R, Apostol M, Zhou ZH, Eisenberg DS, Rodriguez JA. Cryo-EM structure of a human prion fibril with a hydrophobic, protease-resistant core. Nature Structural & Molecular Biology. PMID 32284600 DOI: 10.1038/S41594-020-0403-Y |
0.778 |
|
| 2019 |
Lu J, Cao Q, Wang C, Zheng J, Luo F, Xie J, Li Y, Ma X, He L, Eisenberg D, Nowick J, Jiang L, Li D. Structure-Based Peptide Inhibitor Design of Amyloid-β Aggregation. Frontiers in Molecular Neuroscience. 12: 54. PMID 30886570 DOI: 10.3389/Fnmol.2019.00054 |
0.357 |
|
| 2019 |
Thiex N, Carlson M, Kieffer R, Kieffer A, Eisenberg D, Barashkov N, Ramsey C. Evaluation of the Use of Microtracers™ in a Proficiency Testing Program. Journal of Aoac International. PMID 30651161 DOI: 10.5740/jaoacint.18-0354 |
0.627 |
|
| 2018 |
Tuukkanen AT, Freire D, Chan S, Arbing MA, Reed RW, Evans TJ, Zenkeviciutė G, Kim J, Kahng S, Sawaya MR, Chaton CT, Wilmanns M, Eisenberg D, Parret AHA, Korotkov KV. Structural Variability of EspG Chaperones from Mycobacterial ESX-1, ESX-3 and ESX-5 Type VII Secretion Systems. Journal of Molecular Biology. PMID 30419243 DOI: 10.1016/J.Jmb.2018.11.003 |
0.402 |
|
| 2018 |
Guenther EL, Cao Q, Trinh H, Lu J, Sawaya MR, Cascio D, Boyer DR, Rodriguez JA, Hughes MP, Eisenberg DS. Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation. Nature Structural & Molecular Biology. PMID 29786080 DOI: 10.1038/S41594-018-0064-2 |
0.322 |
|
| 2018 |
Saelices L, Sievers SA, Sawaya MR, Eisenberg DS. Crystal Structures of Amyloidogenic Segments of Human Transthyretin. Protein Science : a Publication of the Protein Society. PMID 29626847 DOI: 10.1002/Pro.3420 |
0.758 |
|
| 2018 |
Guenther EL, Ge P, Trinh H, Sawaya MR, Cascio D, Boyer DR, Gonen T, Zhou ZH, Eisenberg DS. Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2. Nature Structural & Molecular Biology. PMID 29531287 DOI: 10.1038/S41594-018-0045-5 |
0.311 |
|
| 2018 |
Sangwan S, Sawaya MR, Murray KA, Hughes M, Eisenberg DS. Atomic structures of corkscrew-forming segments of SOD1 reveal varied oligomer conformations. Protein Science : a Publication of the Protein Society. PMID 29453800 DOI: 10.1002/Pro.3391 |
0.374 |
|
| 2018 |
Hughes MP, Sawaya MR, Boyer DR, Goldschmidt L, Rodriguez JA, Cascio D, Chong L, Gonen T, Eisenberg DS. Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks. Science (New York, N.Y.). 359: 698-701. PMID 29439243 DOI: 10.1126/Science.Aan6398 |
0.628 |
|
| 2018 |
Gallagher-Jones M, Glynn C, Boyer DR, Martynowycz MW, Hernandez E, Miao J, Zee CT, Novikova IV, Goldschmidt L, McFarlane HT, Helguera GF, Evans JE, Sawaya MR, Cascio D, Eisenberg DS, et al. Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp. Nature Structural & Molecular Biology. PMID 29335561 DOI: 10.2210/Pdb6Axz/Pdb |
0.803 |
|
| 2017 |
Hanczyc P, Mikhailovsky AA, Boyer DR, Sawaya MR, Heeger AJ, Eisenberg D. Ultrafast Time-Resolved Studies on Fluorescein for Recognition Strands Architecture in Amyloid Fibrils. The Journal of Physical Chemistry. B. PMID 29237120 DOI: 10.1021/Acs.Jpcb.7B07923 |
0.431 |
|
| 2017 |
Sangwan S, Zhao A, Adams KL, Jayson CK, Sawaya MR, Guenther EL, Pan AC, Ngo J, Moore DM, Soriaga AB, Do TD, Goldschmidt L, Nelson R, Bowers MT, Koehler CM, ... ... Eisenberg DS, et al. Atomic structure of a toxic, oligomeric segment of SOD1 linked to amyotrophic lateral sclerosis (ALS). Proceedings of the National Academy of Sciences of the United States of America. PMID 28760994 DOI: 10.1073/Pnas.1705091114 |
0.807 |
|
| 2017 |
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T. Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED. Nature Methods. PMID 28192420 DOI: 10.1038/Nmeth.4178 |
0.355 |
|
| 2017 |
Eisenberg DS, Sawaya MR. Structural Studies of Amyloid Proteins at the Molecular Level. Annual Review of Biochemistry. PMID 28125289 DOI: 10.1146/Annurev-Biochem-061516-045104 |
0.377 |
|
| 2016 |
Riek R, Eisenberg DS. The activities of amyloids from a structural perspective. Nature. 539: 227-235. PMID 27830791 DOI: 10.1038/Nature20416 |
0.323 |
|
| 2016 |
Colletier JP, Sawaya MR, Gingery M, Rodriguez JA, Cascio D, Brewster AS, Michels-Clark T, Hice RH, Coquelle N, Boutet S, Williams GJ, Messerschmidt M, DePonte DP, Sierra RG, Laksmono H, ... ... Eisenberg DS, et al. De novo phasing with X-ray laser reveals mosquito larvicide BinAB structure. Nature. PMID 27680699 DOI: 10.1038/Nature19825 |
0.519 |
|
| 2016 |
Yin JX, Maalouf M, Han P, Zhao M, Gao M, Dharshaun T, Ryan C, Whitelegge J, Wu J, Eisenberg D, Reiman EM, Schweizer FE, Shi J. Ketones block amyloid entry and improve cognition in an Alzheimer's model. Neurobiology of Aging. 39: 25-37. PMID 26923399 DOI: 10.1016/J.Neurobiolaging.2015.11.018 |
0.594 |
|
| 2016 |
Wagner JM, Chan S, Evans TJ, Kahng S, Kim J, Arbing MA, Eisenberg D, Korotkov KV. Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system. Bmc Structural Biology. 16: 5. PMID 26922638 DOI: 10.1186/S12900-016-0056-6 |
0.33 |
|
| 2016 |
Moshe A, Landau M, Eisenberg D. Preparation of Crystalline Samples of Amyloid Fibrils and Oligomers. Methods in Molecular Biology (Clifton, N.J.). 1345: 201-10. PMID 26453214 DOI: 10.1007/978-1-4939-2978-8_13 |
0.453 |
|
| 2015 |
Soragni A, Janzen DM, Johnson LM, Lindgren AG, Thai-Quynh Nguyen A, Tiourin E, Soriaga AB, Lu J, Jiang L, Faull KF, Pellegrini M, Memarzadeh S, Eisenberg DS. A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression in Ovarian Carcinomas. Cancer Cell. PMID 26748848 DOI: 10.1016/J.Ccell.2015.12.002 |
0.77 |
|
| 2015 |
Do TD, LaPointe NE, Nelson R, Krotee P, Hayden EY, Ulrich B, Quan S, Feinstein SC, Teplow DB, Eisenberg D, Shea JE, Bowers MT. Amyloid β-Protein C-terminal Fragments: Formation of Cylindrins and β-barrels. Journal of the American Chemical Society. PMID 26700445 DOI: 10.1021/Jacs.5B09536 |
0.572 |
|
| 2015 |
Soriaga AB, Sangwan S, Macdonald R, Sawaya MR, Eisenberg D. Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets. The Journal of Physical Chemistry. B. PMID 26629790 DOI: 10.1021/Acs.Jpcb.5B09981 |
0.826 |
|
| 2015 |
Soragni A, Yousefi S, Stoeckle C, Soriaga AB, Sawaya MR, Kozlowski E, Schmid I, Radonjic-Hoesli S, Boutet S, Williams GJ, Messerschmidt M, Seibert MM, Cascio D, Zatsepin NA, Burghammer M, ... ... Eisenberg DS, et al. Toxicity of eosinophil MBP is repressed by intracellular crystallization and promoted by extracellular aggregation. Molecular Cell. 57: 1011-21. PMID 25728769 DOI: 10.1016/J.Molcel.2015.01.026 |
0.79 |
|
| 2015 |
Kurt TD, Jiang L, Fernández-Borges N, Bett C, Liu J, Yang T, Spraker TR, Castilla J, Eisenberg D, Kong Q, Sigurdson CJ. Human prion protein sequence elements impede cross-species chronic wasting disease transmission. The Journal of Clinical Investigation. 125: 1485-96. PMID 25705888 DOI: 10.1172/Jci79408 |
0.307 |
|
| 2015 |
Brewster AS, Sawaya MR, Rodriguez J, Hattne J, Echols N, McFarlane HT, Cascio D, Adams PD, Eisenberg DS, Sauter NK. Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns. Acta Crystallographica. Section D, Biological Crystallography. 71: 357-66. PMID 25664747 DOI: 10.1107/S1399004714026145 |
0.785 |
|
| 2014 |
Li D, Jones EM, Sawaya MR, Furukawa H, Luo F, Ivanova M, Sievers SA, Wang W, Yaghi OM, Liu C, Eisenberg DS. Structure-based design of functional amyloid materials. Journal of the American Chemical Society. 136: 18044-51. PMID 25474758 DOI: 10.1021/Ja509648U |
0.706 |
|
| 2014 |
Sawaya MR, Cascio D, Gingery M, Rodriguez J, Goldschmidt L, Colletier JP, Messerschmidt MM, Boutet S, Koglin JE, Williams GJ, Brewster AS, Nass K, Hattne J, Botha S, Doak RB, ... ... Eisenberg DS, et al. Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam. Proceedings of the National Academy of Sciences of the United States of America. 111: 12769-74. PMID 25136092 DOI: 10.1073/Pnas.1413456111 |
0.561 |
|
| 2014 |
Hochberg GK, Ecroyd H, Liu C, Cox D, Cascio D, Sawaya MR, Collier MP, Stroud J, Carver JA, Baldwin AJ, Robinson CV, Eisenberg DS, Benesch JL, Laganowsky A. The structured core domain of αB-crystallin can prevent amyloid fibrillation and associated toxicity. Proceedings of the National Academy of Sciences of the United States of America. 111: E1562-70. PMID 24711386 DOI: 10.1073/Pnas.1322673111 |
0.358 |
|
| 2014 |
Korman TP, Sahachartsiri B, Li D, Vinokur JM, Eisenberg D, Bowie JU. A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates. Protein Science : a Publication of the Protein Society. 23: 576-85. PMID 24623472 DOI: 10.1002/Pro.2436 |
0.755 |
|
| 2014 |
Kurt TD, Jiang L, Bett C, Eisenberg D, Sigurdson CJ. A proposed mechanism for the promotion of prion conversion involving a strictly conserved tyrosine residue in the β2-α2 loop of PrPC. The Journal of Biological Chemistry. 289: 10660-7. PMID 24596090 DOI: 10.1074/Jbc.M114.549030 |
0.339 |
|
| 2014 |
Goldschmidt L, Eisenberg D, Derewenda ZS. Salvage or recovery of failed targets by mutagenesis to reduce surface entropy. Methods in Molecular Biology (Clifton, N.J.). 1140: 201-9. PMID 24590720 DOI: 10.1007/978-1-4939-0354-2_16 |
0.609 |
|
| 2014 |
Ivanova MI, Sievers SA, Guenther EL, Johnson LM, Winkler DD, Galaleldeen A, Sawaya MR, Hart PJ, Eisenberg DS. Aggregation-triggering segments of SOD1 fibril formation support a common pathway for familial and sporadic ALS. Proceedings of the National Academy of Sciences of the United States of America. 111: 197-201. PMID 24344300 DOI: 10.1073/Pnas.1320786110 |
0.747 |
|
| 2014 |
Eisenberg D, Laganowsky A, Liu C, Sawaya M, Whitelegge J, Zhao M, Soriaga A, Landau M, Teng P, Cascio D, Jiang L, Sievers S, Soragni A. Structural Studies of the Amyloid State of Proteins Acta Crystallographica Section a Foundations and Advances. 70: C797-C797. DOI: 10.1107/S205327331409202X |
0.832 |
|
| 2013 |
Arbing MA, Chan S, Harris L, Kuo E, Zhou TT, Ahn CJ, Nguyen L, He Q, Lu J, Menchavez PT, Shin A, Holton T, Sawaya MR, Cascio D, Eisenberg D. Heterologous expression of mycobacterial Esx complexes in Escherichia coli for structural studies is facilitated by the use of maltose binding protein fusions. Plos One. 8: e81753. PMID 24312350 DOI: 10.1371/Journal.Pone.0081753 |
0.378 |
|
| 2013 |
Jiang L, Liu C, Leibly D, Landau M, Zhao M, Hughes MP, Eisenberg DS. Structure-based discovery of fiber-binding compounds that reduce the cytotoxicity of amyloid beta. Elife. 2: e00857. PMID 23878726 DOI: 10.7554/Elife.00857 |
0.578 |
|
| 2013 |
Jiang L, Eisenberg D. Structure-Based Approaches to Amyloid Inhibitors Biophysical Journal. 104: 36a. DOI: 10.1016/J.Bpj.2012.11.236 |
0.377 |
|
| 2012 |
Liu C, Zhao M, Jiang L, Cheng PN, Park J, Sawaya MR, Pensalfini A, Gou D, Berk AJ, Glabe CG, Nowick J, Eisenberg D. Out-of-register β-sheets suggest a pathway to toxic amyloid aggregates. Proceedings of the National Academy of Sciences of the United States of America. 109: 20913-8. PMID 23213214 DOI: 10.1073/Pnas.1218792109 |
0.737 |
|
| 2012 |
Cheng PN, Liu C, Zhao M, Eisenberg D, Nowick JS. Amyloid β-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity. Nature Chemistry. 4: 927-33. PMID 23089868 DOI: 10.1038/Nchem.1433 |
0.672 |
|
| 2012 |
Min AB, Miallau L, Sawaya MR, Habel J, Cascio D, Eisenberg D. The crystal structure of the Rv0301-Rv0300 VapBC-3 toxin-antitoxin complex from M. tuberculosis reveals a Mg²⺠ion in the active site and a putative RNA-binding site. Protein Science : a Publication of the Protein Society. 21: 1754-67. PMID 23011806 DOI: 10.1002/Pro.2161 |
0.622 |
|
| 2012 |
Gallat FX, Laganowsky A, Wood K, Gabel F, van Eijck L, Wuttke J, Moulin M, Härtlein M, Eisenberg D, Colletier JP, Zaccai G, Weik M. Dynamical coupling of intrinsically disordered proteins and their hydration water: comparison with folded soluble and membrane proteins. Biophysical Journal. 103: 129-36. PMID 22828339 DOI: 10.1016/J.Bpj.2012.05.027 |
0.375 |
|
| 2012 |
Kato M, Han TW, Xie S, Shi K, Du X, Wu LC, Mirzaei H, Goldsmith EJ, Longgood J, Pei J, Grishin NV, Frantz DE, Schneider JW, Chen S, Li L, ... ... Eisenberg D, et al. Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell. 149: 753-67. PMID 22579281 DOI: 10.1016/J.Cell.2012.04.017 |
0.34 |
|
| 2012 |
Stroud JC, Liu C, Teng PK, Eisenberg D. Toxic fibrillar oligomers of amyloid-β have cross-β structure. Proceedings of the National Academy of Sciences of the United States of America. 109: 7717-22. PMID 22547798 DOI: 10.1073/Pnas.1203193109 |
0.658 |
|
| 2012 |
Eisenberg D, Jucker M. The amyloid state of proteins in human diseases. Cell. 148: 1188-203. PMID 22424229 DOI: 10.1016/J.Cell.2012.02.022 |
0.385 |
|
| 2012 |
Laganowsky A, Liu C, Sawaya MR, Whitelegge JP, Park J, Zhao M, Pensalfini A, Soriaga AB, Landau M, Teng PK, Cascio D, Glabe C, Eisenberg D. Atomic view of a toxic amyloid small oligomer. Science (New York, N.Y.). 335: 1228-31. PMID 22403391 DOI: 10.1126/Science.1213151 |
0.828 |
|
| 2012 |
Teng PK, Anderson NJ, Goldschmidt L, Sawaya MR, Sambashivan S, Eisenberg D. Ribonuclease A suggests how proteins self-chaperone against amyloid fiber formation. Protein Science : a Publication of the Protein Society. 21: 26-37. PMID 22095666 DOI: 10.1002/Pro.754 |
0.805 |
|
| 2012 |
Zheng J, Liu C, Sawaya MR, Vadla B, Khan S, Woods RJ, Eisenberg D, Goux WJ, Nowick JS. Correction to Macrocyclic β-Sheet Peptides That Inhibit the Aggregation of a Tau-Protein-Derived Hexapeptide Journal of the American Chemical Society. 134: 17832-17832. DOI: 10.1021/Ja308086H |
0.362 |
|
| 2012 |
Eisenberg D, Quimby JM, Ho D, Lavi R, Benisvy L, Scott LT, Shenhar R. Special Electronic Structure and Extended Supramolecular Oligomerization of Anionic 1,4-Dicorannulenylbenzene (Eur. J. Org. Chem. 32/2012) European Journal of Organic Chemistry. 2012: n/a-n/a. DOI: 10.1002/Ejoc.201290087 |
0.313 |
|
| 2011 |
Colletier JP, Laganowsky A, Landau M, Zhao M, Soriaga AB, Goldschmidt L, Flot D, Cascio D, Sawaya MR, Eisenberg D. Molecular basis for amyloid-beta polymorphism. Proceedings of the National Academy of Sciences of the United States of America. 108: 16938-43. PMID 21949245 DOI: 10.1073/Pnas.1112600108 |
0.811 |
|
| 2011 |
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, ... ... Eisenberg D, et al. PSICQUIC and PSISCORE: accessing and scoring molecular interactions. Nature Methods. 8: 528-9. PMID 21716279 DOI: 10.1038/Nmeth.1637 |
0.317 |
|
| 2011 |
Landau M, Sawaya MR, Faull KF, Laganowsky A, Jiang L, Sievers SA, Liu J, Barrio JR, Eisenberg D. Towards a pharmacophore for amyloid. Plos Biology. 9: e1001080. PMID 21695112 DOI: 10.1371/Journal.Pbio.1001080 |
0.76 |
|
| 2011 |
Sievers SA, Karanicolas J, Chang HW, Zhao A, Jiang L, Zirafi O, Stevens JT, Münch J, Baker D, Eisenberg D. Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation. Nature. 475: 96-100. PMID 21677644 DOI: 10.1038/Nature10154 |
0.823 |
|
| 2011 |
Liu C, Sawaya MR, Cheng PN, Zheng J, Nowick JS, Eisenberg D. Characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic β-sheet mimics. Journal of the American Chemical Society. 133: 6736-44. PMID 21473620 DOI: 10.1021/Ja200222N |
0.432 |
|
| 2011 |
Zhao M, Cascio D, Sawaya MR, Eisenberg D. Structures of segments of α-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation. Protein Science : a Publication of the Protein Society. 20: 996-1004. PMID 21462277 DOI: 10.1002/Pro.630 |
0.682 |
|
| 2011 |
Apostol MI, Wiltzius JJ, Sawaya MR, Cascio D, Eisenberg D. Atomic structures suggest determinants of transmission barriers in mammalian prion disease. Biochemistry. 50: 2456-63. PMID 21323366 DOI: 10.1021/Bi101803K |
0.795 |
|
| 2011 |
Zheng J, Liu C, Sawaya MR, Vadla B, Khan S, Woods RJ, Eisenberg D, Goux WJ, Nowick JS. Macrocyclic β-sheet peptides that inhibit the aggregation of a tau-protein-derived hexapeptide. Journal of the American Chemical Society. 133: 3144-57. PMID 21319744 DOI: 10.1021/Ja110545H |
0.357 |
|
| 2011 |
Chim N, Habel JE, Johnston JM, Krieger I, Miallau L, Sankaranarayanan R, Morse RP, Bruning J, Swanson S, Kim H, Kim CY, Li H, Bulloch EM, Payne RJ, Manos-Turvey A, ... ... Eisenberg DS, et al. The TB Structural Genomics Consortium: a decade of progress. Tuberculosis (Edinburgh, Scotland). 91: 155-72. PMID 21247804 DOI: 10.1016/J.Tube.2010.11.009 |
0.638 |
|
| 2011 |
Liu C, Sawaya MR, Eisenberg D. β₂-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages. Nature Structural & Molecular Biology. 18: 49-55. PMID 21131979 DOI: 10.1038/Nsmb.1948 |
0.399 |
|
| 2011 |
Maalouf M, Schweizer F, Zhao M, Eisenberg D. P4-264: Enhancing mitochondrial function with the ketones acetoacetate and β-hydroxybutyrate alleviates soluble Aβ42 toxicity Alzheimer's & Dementia. 7: S798-S798. DOI: 10.1016/J.Jalz.2011.05.2301 |
0.558 |
|
| 2010 |
Apostol MI, Sawaya MR, Cascio D, Eisenberg D. Crystallographic studies of prion protein (PrP) segments suggest how structural changes encoded by polymorphism at residue 129 modulate susceptibility to human prion disease. The Journal of Biological Chemistry. 285: 29671-5. PMID 20685658 DOI: 10.1074/Jbc.C110.158303 |
0.778 |
|
| 2010 |
Khakshoor O, Lin AJ, Korman TP, Sawaya MR, Tsai SC, Eisenberg D, Nowick JS. X-ray crystallographic structure of an artificial beta-sheet dimer. Journal of the American Chemical Society. 132: 11622-8. PMID 20669960 DOI: 10.1021/Ja103438W |
0.765 |
|
| 2010 |
Laganowsky A, Eisenberg D. Non-3D domain swapped crystal structure of truncated zebrafish alphaA crystallin. Protein Science : a Publication of the Protein Society. 19: 1978-84. PMID 20669149 DOI: 10.1002/Pro.471 |
0.381 |
|
| 2010 |
Arbing MA, Kaufmann M, Phan T, Chan S, Cascio D, Eisenberg D. The crystal structure of the Mycobacterium tuberculosis Rv3019c-Rv3020c ESX complex reveals a domain-swapped heterotetramer. Protein Science : a Publication of the Protein Society. 19: 1692-703. PMID 20629176 DOI: 10.1002/Pro.451 |
0.382 |
|
| 2010 |
Ostapchenko VG, Sawaya MR, Makarava N, Savtchenko R, Nilsson KP, Eisenberg D, Baskakov IV. Two amyloid States of the prion protein display significantly different folding patterns. Journal of Molecular Biology. 400: 908-21. PMID 20553730 DOI: 10.1016/J.Jmb.2010.05.051 |
0.431 |
|
| 2010 |
Laganowsky A, Benesch JL, Landau M, Ding L, Sawaya MR, Cascio D, Huang Q, Robinson CV, Horwitz J, Eisenberg D. Crystal structures of truncated alphaA and alphaB crystallins reveal structural mechanisms of polydispersity important for eye lens function. Protein Science : a Publication of the Protein Society. 19: 1031-43. PMID 20440841 DOI: 10.1002/Pro.380 |
0.429 |
|
| 2010 |
Wang L, Schubert D, Sawaya MR, Eisenberg D, Riek R. Multidimensional structure-activity relationship of a protein in its aggregated states. Angewandte Chemie (International Ed. in English). 49: 3904-8. PMID 20397175 DOI: 10.1002/Anie.201000068 |
0.464 |
|
| 2010 |
Goldschmidt L, Teng PK, Riek R, Eisenberg D. Identifying the amylome, proteins capable of forming amyloid-like fibrils. Proceedings of the National Academy of Sciences of the United States of America. 107: 3487-92. PMID 20133726 DOI: 10.1073/Pnas.0915166107 |
0.77 |
|
| 2010 |
Park J, Apostol MI, Eisenberg D. Beta-Barrel Hypothesis: Structural Insights to Oligomeric Prion Conformation Biophysical Journal. 98: 650a. DOI: 10.1016/J.Bpj.2009.12.3562 |
0.825 |
|
| 2009 |
Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, ... Eisenberg D, et al. Recurated protein interaction datasets. Nature Methods. 6: 860-1. PMID 19935838 DOI: 10.1038/Nmeth1209-860 |
0.337 |
|
| 2009 |
Ivanova MI, Sievers SA, Sawaya MR, Wall JS, Eisenberg D. Molecular basis for insulin fibril assembly. Proceedings of the National Academy of Sciences of the United States of America. 106: 18990-5. PMID 19864624 DOI: 10.1073/Pnas.0910080106 |
0.75 |
|
| 2009 |
Wiltzius JJ, Landau M, Nelson R, Sawaya MR, Apostol MI, Goldschmidt L, Soriaga AB, Cascio D, Rajashankar K, Eisenberg D. Molecular mechanisms for protein-encoded inheritance. Nature Structural & Molecular Biology. 16: 973-8. PMID 19684598 DOI: 10.1038/Nsmb.1643 |
0.795 |
|
| 2009 |
Teng PK, Eisenberg D. Short protein segments can drive a non-fibrillizing protein into the amyloid state. Protein Engineering, Design & Selection : Peds. 22: 531-6. PMID 19602569 DOI: 10.1093/Protein/Gzp037 |
0.685 |
|
| 2009 |
Maji SK, Perrin MH, Sawaya MR, Jessberger S, Vadodaria K, Rissman RA, Singru PS, Nilsson KP, Simon R, Schubert D, Eisenberg D, Rivier J, Sawchenko P, Vale W, Riek R. Functional amyloids as natural storage of peptide hormones in pituitary secretory granules. Science (New York, N.Y.). 325: 328-32. PMID 19541956 DOI: 10.1126/Science.1173155 |
0.397 |
|
| 2009 |
Wiltzius JJ, Sievers SA, Sawaya MR, Eisenberg D. Atomic structures of IAPP (amylin) fusions suggest a mechanism for fibrillation and the role of insulin in the process. Protein Science : a Publication of the Protein Society. 18: 1521-30. PMID 19475663 DOI: 10.1002/Pro.145 |
0.811 |
|
| 2009 |
Miallau L, Faller M, Chiang J, Arbing M, Guo F, Cascio D, Eisenberg D. Structure and proposed activity of a member of the VapBC family of toxin-antitoxin systems. VapBC-5 from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 284: 276-83. PMID 18952600 DOI: 10.1074/Jbc.M805061200 |
0.371 |
|
| 2008 |
Llewellyn R, Eisenberg DS. Annotating proteins with generalized functional linkages. Proceedings of the National Academy of Sciences of the United States of America. 105: 17700-5. PMID 19004787 DOI: 10.1073/Pnas.0809583105 |
0.8 |
|
| 2008 |
Medrano-Soto A, Pal D, Eisenberg D. Inferring molecular function: contributions from functional linkages. Trends in Genetics : Tig. 24: 587-90. PMID 18951645 DOI: 10.1016/J.Tig.2008.10.001 |
0.317 |
|
| 2008 |
Sawaya MR, Wojtowicz WM, Andre I, Qian B, Wu W, Baker D, Eisenberg D, Zipursky SL. A double S shape provides the structural basis for the extraordinary binding specificity of Dscam isoforms. Cell. 134: 1007-18. PMID 18805093 DOI: 10.1016/J.Cell.2008.07.042 |
0.335 |
|
| 2008 |
Riley R, Pellegrini M, Eisenberg D. Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosis. Plos Computational Biology. 4: e1000174. PMID 18787688 DOI: 10.1371/Journal.Pcbi.1000174 |
0.516 |
|
| 2008 |
Wang L, Maji SK, Sawaya MR, Eisenberg D, Riek R. Bacterial inclusion bodies contain amyloid-like structure. Plos Biology. 6: e195. PMID 18684013 DOI: 10.1371/Journal.Pbio.0060195 |
0.452 |
|
| 2008 |
Cruz D, Watson AD, Miller CS, Montoya D, Ochoa MT, Sieling PA, Gutierrez MA, Navab M, Reddy ST, Witztum JL, Fogelman AM, Rea TH, Eisenberg D, Berliner J, Modlin RL. Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy. The Journal of Clinical Investigation. 118: 2917-28. PMID 18636118 DOI: 10.1172/Jci34189 |
0.442 |
|
| 2008 |
Wiltzius JJ, Sievers SA, Sawaya MR, Cascio D, Popov D, Riekel C, Eisenberg D. Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin). Protein Science : a Publication of the Protein Society. 17: 1467-74. PMID 18556473 DOI: 10.1110/Ps.036509.108 |
0.815 |
|
| 2008 |
Guo Z, Eisenberg D. The structure of a fibril-forming sequence, NNQQNY, in the context of a globular fold. Protein Science : a Publication of the Protein Society. 17: 1617-23. PMID 18552127 DOI: 10.1110/Ps.036368.108 |
0.441 |
|
| 2008 |
Miller CS, Eisenberg D. Using inferred residue contacts to distinguish between correct and incorrect protein models. Bioinformatics (Oxford, England). 24: 1575-82. PMID 18511466 DOI: 10.1093/Bioinformatics/Btn248 |
0.561 |
|
| 2008 |
Salwiński Ł, Eisenberg D. Motif-based fold assignment. Protein Science. 10: 2460-2469. PMID 11714913 DOI: 10.1110/Ps.14401 |
0.303 |
|
| 2007 |
Kuriyan J, Eisenberg D. The origin of protein interactions and allostery in colocalization. Nature. 450: 983-90. PMID 18075577 DOI: 10.1038/Nature06524 |
0.356 |
|
| 2007 |
Anderson DH, Kickhoefer VA, Sievers SA, Rome LH, Eisenberg D. Draft crystal structure of the vault shell at 9-A resolution. Plos Biology. 5: e318. PMID 18044992 DOI: 10.1371/Journal.Pbio.0050318 |
0.757 |
|
| 2007 |
Murillo AC, Li HY, Alber T, Baker EN, Berger JM, Cherney LT, Cherney MM, Cho YS, Eisenberg D, Garen CR, Goulding CW, Hung LW, Ioerger TR, Jacobs WR, James MN, et al. High throughput crystallography of TB drug targets. Infectious Disorders Drug Targets. 7: 127-39. PMID 17970224 DOI: 10.2174/187152607781001853 |
0.713 |
|
| 2007 |
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, ... ... Eisenberg D, et al. Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. Bmc Biology. 5: 44. PMID 17925023 DOI: 10.1186/1741-7007-5-44 |
0.301 |
|
| 2007 |
Kim SM, Bowers PM, Pal D, Strong M, Terwilliger TC, Kaufmann M, Eisenberg D. Functional linkages can reveal protein complexes for structure determination. Structure (London, England : 1993). 15: 1079-89. PMID 17850747 DOI: 10.1016/J.Str.2007.06.021 |
0.645 |
|
| 2007 |
Goldschmidt L, Cooper DR, Derewenda ZS, Eisenberg D. Toward rational protein crystallization: A Web server for the design of crystallizable protein variants. Protein Science : a Publication of the Protein Society. 16: 1569-76. PMID 17656576 DOI: 10.1110/Ps.072914007 |
0.615 |
|
| 2007 |
Sawaya MR, Sambashivan S, Nelson R, Ivanova MI, Sievers SA, Apostol MI, Thompson MJ, Balbirnie M, Wiltzius JJ, McFarlane HT, Madsen AØ, Riekel C, Eisenberg D. Atomic structures of amyloid cross-beta spines reveal varied steric zippers. Nature. 447: 453-7. PMID 17468747 DOI: 10.1038/Nature05695 |
0.798 |
|
| 2007 |
Guo Z, Eisenberg D. The mechanism of the amyloidogenic conversion of T7 endonuclease I. The Journal of Biological Chemistry. 282: 14968-74. PMID 17360710 DOI: 10.1074/Jbc.M609514200 |
0.331 |
|
| 2007 |
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, ... Eisenberg D, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016 |
0.647 |
|
| 2007 |
Tsemekhman K, Goldschmidt L, Eisenberg D, Baker D. Cooperative hydrogen bonding in amyloid formation. Protein Science : a Publication of the Protein Society. 16: 761-4. PMID 17327394 DOI: 10.1110/Ps.062609607 |
0.618 |
|
| 2007 |
Strong M, Eisenberg D. The protein network as a tool for finding novel drug targets. Progress in Drug Research. Fortschritte Der Arzneimittelforschung. Progrã¨S Des Recherches Pharmaceutiques. 64: 191, 193-215. PMID 17195476 DOI: 10.1007/978-3-7643-7567-6_8 |
0.6 |
|
| 2007 |
White EL, Southworth K, Ross L, Cooley S, Gill RB, Sosa MI, Manouvakhova A, Rasmussen L, Goulding C, Eisenberg D, Fletcher TM. A novel inhibitor of Mycobacterium tuberculosis pantothenate synthetase. Journal of Biomolecular Screening. 12: 100-5. PMID 17175524 DOI: 10.1177/1087057106296484 |
0.615 |
|
| 2007 |
Goulding CW, Bowers PM, Segelke B, Lekin T, Kim CY, Terwilliger TC, Eisenberg D. The structure and computational analysis of Mycobacterium tuberculosis protein CitE suggest a novel enzymatic function. Journal of Molecular Biology. 365: 275-83. PMID 17064730 DOI: 10.1016/J.Jmb.2006.09.086 |
0.669 |
|
| 2006 |
Nelson R, Eisenberg D. Structural models of amyloid-like fibrils. Advances in Protein Chemistry. 73: 235-82. PMID 17190616 DOI: 10.1016/S0065-3233(06)73008-X |
0.613 |
|
| 2006 |
Abdallah AM, Verboom T, Hannes F, Safi M, Strong M, Eisenberg D, Musters RJ, Vandenbroucke-Grauls CM, Appelmelk BJ, Luirink J, Bitter W. A specific secretion system mediates PPE41 transport in pathogenic mycobacteria. Molecular Microbiology. 62: 667-79. PMID 17076665 DOI: 10.1111/J.1365-2958.2006.05409.X |
0.571 |
|
| 2006 |
Eisenberg D, Nelson R, Sawaya MR, Balbirnie M, Sambashivan S, Ivanova MI, Madsen AØ, Riekel C. The structural biology of protein aggregation diseases: Fundamental questions and some answers. Accounts of Chemical Research. 39: 568-75. PMID 16981672 DOI: 10.1021/Ar0500618 |
0.832 |
|
| 2006 |
Guo Z, Eisenberg D. Runaway domain swapping in amyloid-like fibrils of T7 endonuclease I. Proceedings of the National Academy of Sciences of the United States of America. 103: 8042-7. PMID 16698921 DOI: 10.1073/Pnas.0602607103 |
0.395 |
|
| 2006 |
Bennett MJ, Sawaya MR, Eisenberg D. Deposition diseases and 3D domain swapping. Structure (London, England : 1993). 14: 811-24. PMID 16698543 DOI: 10.1016/J.Str.2006.03.011 |
0.434 |
|
| 2006 |
Strong M, Sawaya MR, Wang S, Phillips M, Cascio D, Eisenberg D. Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 8060-5. PMID 16690741 DOI: 10.1073/Pnas.0602606103 |
0.66 |
|
| 2006 |
Nelson R, Eisenberg D. Recent atomic models of amyloid fibril structure. Current Opinion in Structural Biology. 16: 260-5. PMID 16563741 DOI: 10.1016/J.Sbi.2006.03.007 |
0.591 |
|
| 2006 |
Ivanova MI, Thompson MJ, Eisenberg D. A systematic screen of beta(2)-microglobulin and insulin for amyloid-like segments. Proceedings of the National Academy of Sciences of the United States of America. 103: 4079-82. PMID 16537488 DOI: 10.1073/Pnas.0511298103 |
0.425 |
|
| 2006 |
Thompson MJ, Sievers SA, Karanicolas J, Ivanova MI, Baker D, Eisenberg D. The 3D profile method for identifying fibril-forming segments of proteins. Proceedings of the National Academy of Sciences of the United States of America. 103: 4074-8. PMID 16537487 DOI: 10.1073/Pnas.0511295103 |
0.775 |
|
| 2006 |
Eisenberg D, Marcotte E, McLachlan AD, Pellegrini M. Bioinformatic challenges for the next decade(s). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 525-7. PMID 16524841 DOI: 10.1098/Rstb.2005.1797 |
0.524 |
|
| 2006 |
Rachman H, Strong M, Schaible U, Schuchhardt J, Hagens K, Mollenkopf H, Eisenberg D, Kaufmann SH. Mycobacterium tuberculosis gene expression profiling within the context of protein networks. Microbes and Infection / Institut Pasteur. 8: 747-57. PMID 16513384 DOI: 10.1016/J.Micinf.2005.09.011 |
0.562 |
|
| 2006 |
Liu PT, Stenger S, Li H, Wenzel L, Tan BH, Krutzik SR, Ochoa MT, Schauber J, Wu K, Meinken C, Kamen DL, Wagner M, Bals R, Steinmeyer A, Zügel U, ... ... Eisenberg D, et al. Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response. Science (New York, N.Y.). 311: 1770-3. PMID 16497887 DOI: 10.1126/Science.1123933 |
0.428 |
|
| 2006 |
Wang S, Eisenberg D. Crystal structure of the pantothenate synthetase from Mycobacterium tuberculosis, snapshots of the enzyme in action. Biochemistry. 45: 1554-61. PMID 16460002 DOI: 10.1021/Bi051873E |
0.36 |
|
| 2006 |
Rachman H, Strong M, Ulrichs T, Grode L, Schuchhardt J, Mollenkopf H, Kosmiadi GA, Eisenberg D, Kaufmann SH. Unique transcriptome signature of Mycobacterium tuberculosis in pulmonary tuberculosis. Infection and Immunity. 74: 1233-42. PMID 16428773 DOI: 10.1128/Iai.74.2.1233-1242.2006 |
0.566 |
|
| 2005 |
Bowers PM, O'Connor BD, Cokus SJ, Sprinzak E, Yeates TO, Eisenberg D. Utilizing logical relationships in genomic data to decipher cellular processes. The Febs Journal. 272: 5110-8. PMID 16218945 DOI: 10.1111/J.1742-4658.2005.04946.X |
0.343 |
|
| 2005 |
Riley R, Lee C, Sabatti C, Eisenberg D. Inferring protein domain interactions from databases of interacting proteins. Genome Biology. 6: R89. PMID 16207360 DOI: 10.1186/Gb-2005-6-10-R89 |
0.639 |
|
| 2005 |
Sambashivan S, Liu Y, Sawaya MR, Gingery M, Eisenberg D. Amyloid-like fibrils of ribonuclease A with three-dimensional domain-swapped and native-like structure. Nature. 437: 266-9. PMID 16148936 DOI: 10.1038/Nature03916 |
0.835 |
|
| 2005 |
Nelson R, Sawaya MR, Balbirnie M, Madsen A, Riekel C, Grothe R, Eisenberg D. Structure of the cross-β spine of amyloid-like fibrils Nature. 435: 773-778. PMID 15944695 DOI: 10.1038/Nature03680 |
0.827 |
|
| 2005 |
Li H, Sawaya MR, Tabita FR, Eisenberg D. Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum. Structure (London, England : 1993). 13: 779-89. PMID 15893668 DOI: 10.1016/J.Str.2005.02.017 |
0.591 |
|
| 2005 |
Goulding CW, Apostol MI, Sawaya MR, Phillips M, Parseghian A, Eisenberg D. Regulation by oligomerization in a mycobacterial folate biosynthetic enzyme. Journal of Molecular Biology. 349: 61-72. PMID 15876368 DOI: 10.1016/J.Jmb.2005.03.023 |
0.793 |
|
| 2005 |
Müller P, Sawaya MR, Pashkov I, Chan S, Nguyen C, Wu Y, Perry LJ, Eisenberg D. The 1.70 Å X-ray crystal structure of Mycobacterium tuberculosis phosphoglycerate mutase Acta Crystallographica Section D: Biological Crystallography. 61: 309-315. PMID 15735341 DOI: 10.1107/S0907444904033190 |
0.403 |
|
| 2005 |
Li H, Pellegrini M, Eisenberg D. Detection of parallel functional modules by comparative analysis of genome sequences. Nature Biotechnology. 23: 253-60. PMID 15696156 DOI: 10.1038/Nbt1065 |
0.496 |
|
| 2005 |
Pal D, Eisenberg D. Inference of protein function from protein structure. Structure (London, England : 1993). 13: 121-30. PMID 15642267 DOI: 10.1016/J.Str.2004.10.015 |
0.392 |
|
| 2005 |
Zhang KY, Eisenberg D. Solid-state phase transition in the crystal structure of ribulose 1,5-bisphosphate carboxylase/oxygenase. Acta Crystallographica. Section D, Biological Crystallography. 50: 258-62. PMID 15299436 DOI: 10.1107/S090744499301306X |
0.307 |
|
| 2005 |
Eisenberg D, Nelson R, Sawaya MR, Balbirnie M, Madsen AØ, Riekel C, Sambashivan S, Liu Y, Gingery M, Grothe R. Structural studies of amyloid Acta Crystallographica Section a Foundations of Crystallography. 61: c8-c8. DOI: 10.1107/S0108767305099666 |
0.807 |
|
| 2005 |
Eisenberg D. Witnessing the structure revolution Nature Structural & Molecular Biology. 12: 731-731. DOI: 10.1038/Nsmb0905-731 |
0.345 |
|
| 2004 |
Strong M, Cascio D, Eisenberg D. A web-based comparative genomics tutorial for investigating microbial genomes. Microbiology Education. 5: 30-5. PMID 23653555 |
0.51 |
|
| 2004 |
Bowers PM, Cokus SJ, Eisenberg D, Yeates TO. Use of logic relationships to decipher protein network organization. Science (New York, N.Y.). 306: 2246-9. PMID 15618515 DOI: 10.1126/Science.1103330 |
0.35 |
|
| 2004 |
Bennett MJ, Eisenberg D. The evolving role of 3D domain swapping in proteins. Structure (London, England : 1993). 12: 1339-41. PMID 15296726 DOI: 10.1016/J.Str.2004.07.004 |
0.348 |
|
| 2004 |
Ivanova MI, Sawaya MR, Gingery M, Attinger A, Eisenberg D. An amyloid-forming segment of beta2-microglobulin suggests a molecular model for the fibril. Proceedings of the National Academy of Sciences of the United States of America. 101: 10584-9. PMID 15249659 DOI: 10.1073/Pnas.0403756101 |
0.385 |
|
| 2004 |
Reinhardt A, Eisenberg D. DPANN: improved sequence to structure alignments following fold recognition. Proteins. 56: 528-38. PMID 15229885 DOI: 10.1002/Prot.20144 |
0.408 |
|
| 2004 |
Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D. Prolinks: a database of protein functional linkages derived from coevolution. Genome Biology. 5: R35. PMID 15128449 DOI: 10.1186/Gb-2004-5-5-R35 |
0.307 |
|
| 2004 |
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Eisenberg D, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926 |
0.343 |
|
| 2004 |
Kleiger G, Panina EM, Mallick P, Eisenberg D. PFIT and PFRIT: bioinformatic algorithms for detecting glycosidase function from structure and sequence. Protein Science : a Publication of the Protein Society. 13: 221-9. PMID 14691237 DOI: 10.1110/Ps.03274104 |
0.78 |
|
| 2004 |
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. The Database of Interacting Proteins: 2004 update. Nucleic Acids Research. 32: D449-51. PMID 14681454 DOI: 10.1093/nar/gkh086 |
0.645 |
|
| 2004 |
Goulding CW, Apostol MI, Gleiter S, Parseghian A, Bardwell J, Gennaro M, Eisenberg D. Gram-positive DsbE proteins function differently from Gram-negative DsbE homologs. A structure to function analysis of DsbE from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 279: 3516-24. PMID 14597624 DOI: 10.1074/Jbc.M311833200 |
0.818 |
|
| 2004 |
Salwinski L, Eisenberg D. Computational methods of analysis of protein-protein interactions. Current Opinion in Structural Biology. 13: 377-82. PMID 12831890 DOI: 10.1016/S0959-440X(03)00070-8 |
0.33 |
|
| 2004 |
Wang S, Eisenberg D. Crystal structures of a pantothenate synthetase from M. tuberculosis and its complexes with substrates and a reaction intermediate. Protein Science : a Publication of the Protein Society. 12: 1097-108. PMID 12717031 DOI: 10.1110/Ps.0241803 |
0.34 |
|
| 2003 |
Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps. Nucleic Acids Research. 31: 7099-109. PMID 14654685 DOI: 10.1093/Nar/Gkg924 |
0.585 |
|
| 2003 |
Lee S, Sawaya MR, Eisenberg D. Structure of superoxide dismutase from Pyrobaculum aerophilum presents a challenging case in molecular replacement with multiple molecules, pseudo-symmetry and twinning. Acta Crystallographica. Section D, Biological Crystallography. 59: 2191-9. PMID 14646077 DOI: 10.1107/S0907444903019942 |
0.568 |
|
| 2003 |
Ivanova MI, Gingery M, Whitson LJ, Eisenberg D. Role of the C-terminal 28 residues of beta2-microglobulin in amyloid fibril formation. Biochemistry. 42: 13536-40. PMID 14622000 DOI: 10.1021/Bi0301486 |
0.399 |
|
| 2003 |
Hsu T, Hingley-Wilson SM, Chen B, Chen M, Dai AZ, Morin PM, Marks CB, Padiyar J, Goulding C, Gingery M, Eisenberg D, Russell RG, Derrick SC, Collins FM, Morris SL, et al. The primary mechanism of attenuation of bacillus Calmette-Guerin is a loss of secreted lytic function required for invasion of lung interstitial tissue. Proceedings of the National Academy of Sciences of the United States of America. 100: 12420-5. PMID 14557547 DOI: 10.1073/Pnas.1635213100 |
0.591 |
|
| 2003 |
Goulding CW, Perry LJ, Anderson D, Sawaya MR, Cascio D, Apostol MI, Chan S, Parseghian A, Wang SS, Wu Y, Cassano V, Gill HS, Eisenberg D. Structural genomics of Mycobacterium tuberculosis: a preliminary report of progress at UCLA. Biophysical Chemistry. 105: 361-70. PMID 14499904 DOI: 10.1016/S0301-4622(03)00101-7 |
0.815 |
|
| 2003 |
Bleharski JR, Li H, Meinken C, Graeber TG, Ochoa MT, Yamamura M, Burdick A, Sarno EN, Wagner M, Röllinghoff M, Rea TH, Colonna M, Stenger S, Bloom BR, Eisenberg D, et al. Use of genetic profiling in leprosy to discriminate clinical forms of the disease. Science (New York, N.Y.). 301: 1527-30. PMID 12970564 DOI: 10.1126/Science.1087785 |
0.445 |
|
| 2003 |
Eisenberg D. The discovery of the alpha-helix and beta-sheet, the principal structural features of proteins. Proceedings of the National Academy of Sciences of the United States of America. 100: 11207-10. PMID 12966187 DOI: 10.1073/Pnas.2034522100 |
0.43 |
|
| 2003 |
Strong M, Mallick P, Pellegrini M, Thompson MJ, Eisenberg D. Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach. Genome Biology. 4: R59. PMID 12952538 DOI: 10.1186/Gb-2003-4-9-R59 |
0.696 |
|
| 2003 |
Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, Kim CY, Smith CV, Sacchettini JC, Bellinzoni M, Bossi R, De Rossi E, Mattevi A, Milano A, Riccardi G, Rizzi M, ... ... Eisenberg DS, et al. The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology. Tuberculosis (Edinburgh, Scotland). 83: 223-49. PMID 12906835 DOI: 10.1016/S1472-9792(03)00051-9 |
0.799 |
|
| 2003 |
Lee S, Eisenberg D. Seeded conversion of recombinant prion protein to a disulfide-bonded oligomer by a reduction-oxidation process. Nature Structural Biology. 10: 725-30. PMID 12897768 DOI: 10.1038/Nsb961 |
0.626 |
|
| 2003 |
Diaz-Avalos R, Long C, Fontano E, Balbirnie M, Grothe R, Eisenberg D, Caspar DL. Cross-beta order and diversity in nanocrystals of an amyloid-forming peptide. Journal of Molecular Biology. 330: 1165-75. PMID 12860136 DOI: 10.1016/S0022-2836(03)00659-4 |
0.808 |
|
| 2003 |
Mura C, Phillips M, Kozhukhovsky A, Eisenberg D. Structure and assembly of an augmented Sm-like archaeal protein 14-mer. Proceedings of the National Academy of Sciences of the United States of America. 100: 4539-44. PMID 12668760 DOI: 10.1073/Pnas.0538042100 |
0.673 |
|
| 2003 |
Mura C, Kozhukhovsky A, Gingery M, Phillips M, Eisenberg D. The oligomerization and ligand-binding properties of Sm-like archaeal proteins (SmAPs). Protein Science : a Publication of the Protein Society. 12: 832-47. PMID 12649441 DOI: 10.1110/Ps.0224703 |
0.612 |
|
| 2003 |
McCarty AS, Kleiger G, Eisenberg D, Smale ST. Selective dimerization of a C2H2 zinc finger subfamily. Molecular Cell. 11: 459-70. PMID 12620233 DOI: 10.1016/S1097-2765(03)00043-1 |
0.724 |
|
| 2003 |
Mura C, Katz JE, Clarke SG, Eisenberg D. Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity. Journal of Molecular Biology. 326: 1559-75. PMID 12595266 DOI: 10.1016/S0022-2836(03)00056-1 |
0.628 |
|
| 2003 |
Anderson DH, Sawaya MR, Cascio D, Ernst W, Modlin R, Krensky A, Eisenberg D. Granulysin crystal structure and a structure-derived lytic mechanism. Journal of Molecular Biology. 325: 355-65. PMID 12488100 DOI: 10.1016/S0022-2836(02)01234-2 |
0.337 |
|
| 2003 |
Deane CM, Salwiński Ł, Xenarios I, Eisenberg D. Protein interactions: two methods for assessment of the reliability of high throughput observations. Molecular & Cellular Proteomics : McP. 1: 349-56. PMID 12118076 DOI: 10.1074/Mcp.M100037-Mcp200 |
0.312 |
|
| 2003 |
Diaz-Avalos R, Long C, Fontano E, Balbirnie M, Grothe R, Eisenberg D, Caspar DL. Cross-beta structure of an amyloid-forming peptide studied by electron nano-crystallography Fibre Diffraction Review. 11: 79. DOI: 10.1382/S20031179 |
0.802 |
|
| 2003 |
Mura C, Katz JE, Clarke SG, Eisenberg D. Erratum to “Structure and Function of an Archaeal Homolog of Survival Protein E (SurEα): An Acid Phosphatase with Purine Nucleotide Specificity” Journal of Molecular Biology. 328: 517. DOI: 10.1016/S0022-2836(03)00343-7 |
0.571 |
|
| 2002 |
Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, Kuo MR, Yang JK, Waldo GS, Suh SW, Chauhan R, Kale A, Bachhawat N, Mande SC, Johnston JM, Lott JS, ... Eisenberg D, et al. The TB structural genomics consortium: providing a structural foundation for drug discovery. Current Drug Targets. Infectious Disorders. 2: 121-41. PMID 12462144 DOI: 10.2174/1568005023342551 |
0.807 |
|
| 2002 |
Mallick P, Weiss R, Eisenberg D. The directional atomic solvation energy: an atom-based potential for the assignment of protein sequences to known folds. Proceedings of the National Academy of Sciences of the United States of America. 99: 16041-6. PMID 12461172 DOI: 10.1073/Pnas.252626399 |
0.604 |
|
| 2002 |
Goulding CW, Parseghian A, Sawaya MR, Cascio D, Apostol MI, Gennaro ML, Eisenberg D. Crystal structure of a major secreted protein of Mycobacterium tuberculosis-MPT63 at 1.5-A resolution. Protein Science : a Publication of the Protein Society. 11: 2887-93. PMID 12441386 DOI: 10.1110/Ps.0219002 |
0.833 |
|
| 2002 |
Kleiger G, Eisenberg D. GXXXG and GXXXA motifs stabilize FAD and NAD(P)-binding Rossmann folds through C(alpha)-H... O hydrogen bonds and van der waals interactions. Journal of Molecular Biology. 323: 69-76. PMID 12368099 DOI: 10.1016/S0022-2836(02)00885-9 |
0.747 |
|
| 2002 |
Gill HS, Pfluegl GM, Eisenberg D. Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation. Biochemistry. 41: 9863-72. PMID 12146952 DOI: 10.1021/Bi020254S |
0.566 |
|
| 2002 |
Mallick P, Boutz DR, Eisenberg D, Yeates TO. Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds. Proceedings of the National Academy of Sciences of the United States of America. 99: 9679-84. PMID 12107280 DOI: 10.1073/Pnas.142310499 |
0.755 |
|
| 2002 |
Duan XJ, Xenarios I, Eisenberg D. Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database. Molecular & Cellular Proteomics : McP. 1: 104-16. PMID 12096128 DOI: 10.1074/Mcp.M100026-Mcp200 |
0.361 |
|
| 2002 |
Ghirlanda G, Lear JD, Ogihara NL, Eisenberg D, DeGrado WF. A hierarchic approach to the design of hexameric helical barrels. Journal of Molecular Biology. 319: 243-53. PMID 12051949 DOI: 10.1016/S0022-2836(02)00233-4 |
0.386 |
|
| 2002 |
Goulding CW, Sawaya MR, Parseghian A, Lim V, Eisenberg D, Missiakas D. Thiol-disulfide exchange in an immunoglobulin-like fold: Structure of the N-terminal domain of DsbD Biochemistry. 41: 6920-6927. PMID 12033924 DOI: 10.1021/Bi016038L |
0.632 |
|
| 2002 |
Liu Y, Eisenberg D. 3D domain swapping: as domains continue to swap. Protein Science : a Publication of the Protein Society. 11: 1285-99. PMID 12021428 DOI: 10.1110/Ps.0201402 |
0.793 |
|
| 2002 |
Kleiger G, Grothe R, Mallick P, Eisenberg D. GXXXG and AXXXA: Common α-Helical Interaction Motifs in Proteins, Particularly in Extremophiles† Biochemistry. 41: 5990-5997. PMID 11993993 DOI: 10.1021/Bi0200763 |
0.785 |
|
| 2002 |
Wang S, Mura C, Sawaya MR, Cascio D, Eisenberg D. Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets. Acta Crystallographica. Section D, Biological Crystallography. 58: 571-8. PMID 11914479 DOI: 10.1107/S0907444902001191 |
0.654 |
|
| 2002 |
Liu Y, Gotte G, Libonati M, Eisenberg D. Structures of the two 3D domain-swapped RNase A trimers. Protein Science : a Publication of the Protein Society. 11: 371-80. PMID 11790847 DOI: 10.1110/Ps.36602 |
0.815 |
|
| 2002 |
Eisenberg D. Heroic Battles of the Protein Wars Science. 295: 2021-2022. DOI: 10.1126/Science.1070319 |
0.325 |
|
| 2002 |
Nelson R, Grothe R, Balbirnie M, Sawaya M, Eisenberg D. Structural studies of polar peptides derived from the yeast prion Sup35 Acta Crystallographica Section a Foundations of Crystallography. 58: c92-c92. DOI: 10.1107/S0108767302088724 |
0.775 |
|
| 2001 |
Kleiger G, Perry J, Eisenberg D. 3D structure and significance of the GPhiXXG helix packing motif in tetramers of the E1beta subunit of pyruvate dehydrogenase from the archeon Pyrobaculum aerophilum. Biochemistry. 40: 14484-14492. PMID 11724561 DOI: 10.1021/Bi011016K |
0.733 |
|
| 2001 |
Singer E, Landgraf R, Horan T, Slamon D, Eisenberg D. Identification of a heregulin binding site in HER3 extracellular domain. The Journal of Biological Chemistry. 276: 44266-74. PMID 11555649 DOI: 10.1074/Jbc.M105428200 |
0.708 |
|
| 2001 |
Xenarios I, Eisenberg D. Protein interaction databases. Current Opinion in Biotechnology. 12: 334-9. PMID 11551460 DOI: 10.1016/S0958-1669(00)00224-X |
0.336 |
|
| 2001 |
Dym O, Eisenberg D. Sequence-structure analysis of FAD-containing proteins. Protein Science. 10: 1712-1728. PMID 11514662 DOI: 10.1110/Ps.12801 |
0.321 |
|
| 2001 |
Mura C, Cascio D, Sawaya MR, Eisenberg DS. The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core. Proceedings of the National Academy of Sciences of the United States of America. 98: 5532-7. PMID 11331747 DOI: 10.1073/Pnas.091102298 |
0.608 |
|
| 2001 |
Gill HS, Eisenberg D. The crystal structure of phosphinothricin in the active site of glutamine synthetase illuminates the mechanism of enzymatic inhibition. Biochemistry. 40: 1903-12. PMID 11329256 DOI: 10.1021/Bi002438H |
0.557 |
|
| 2001 |
Marcotte EM, Xenarios I, Eisenberg D. Mining literature for protein-protein interactions. Bioinformatics (Oxford, England). 17: 359-63. PMID 11301305 DOI: 10.1093/Bioinformatics/17.4.359 |
0.515 |
|
| 2001 |
Landgraf R, Xenarios I, Eisenberg D. Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. Journal of Molecular Biology. 307: 1487-502. PMID 11292355 DOI: 10.1006/Jmbi.2001.4540 |
0.347 |
|
| 2001 |
Anderson DH, Harth G, Horwitz MA, Eisenberg D. An interfacial mechanism and a class of inhibitors inferred from two crystal structures of the Mycobacterium tuberculosis 30 kDa major secretory protein (Antigen 85B), a mycolyl transferase. Journal of Molecular Biology. 307: 671-81. PMID 11254389 DOI: 10.1006/Jmbi.2001.4461 |
0.354 |
|
| 2001 |
Balbirnie M, Grothe R, Eisenberg DS. An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated β-sheet structure for amyloid Proceedings of the National Academy of Sciences of the United States of America. 98: 2375-2380. PMID 11226247 DOI: 10.1073/pnas.041617698 |
0.824 |
|
| 2001 |
Liu Y, Gotte G, Libonati M, Eisenberg D. A domain-swapped RNase A dimer with implications for amyloid formation. Nature Structural Biology. 8: 211-4. PMID 11224563 DOI: 10.1038/84941 |
0.817 |
|
| 2001 |
Ogihara NL, Ghirlanda G, Bryson JW, Gingery M, DeGrado WF, Eisenberg D. Design of three-dimensional domain-swapped dimers and fibrous oligomers. Proceedings of the National Academy of Sciences of the United States of America. 98: 1404-9. PMID 11171963 DOI: 10.1073/Pnas.98.4.1404 |
0.378 |
|
| 2001 |
Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D. DIP: The Database of Interacting Proteins: 2001 update. Nucleic Acids Research. 29: 239-41. PMID 11125102 DOI: 10.1093/Nar/29.1.239 |
0.521 |
|
| 2000 |
Steere B, Eisenberg D. Characterization of high-order diphtheria toxin oligomers. Biochemistry. 39: 15901-15909. PMID 11123917 DOI: 10.1021/Bi0011678 |
0.805 |
|
| 2000 |
Marcotte EM, Xenarios I, van Der Bliek AM, Eisenberg D. Localizing proteins in the cell from their phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America. 97: 12115-20. PMID 11035803 DOI: 10.1073/Pnas.220399497 |
0.548 |
|
| 2000 |
Dym O, Pratt EA, Ho C, Eisenberg D. The crystal structure of d-lactate dehydrogenase, a peripheral membrane respiratory enzyme Proceedings of the National Academy of Sciences of the United States of America. 97: 9413-9418. PMID 10944213 DOI: 10.1073/Pnas.97.17.9413 |
0.303 |
|
| 2000 |
Eisenberg D, Marcotte EM, Xenarios I, Yeates TO. Protein function in the post-genomic era. Nature. 405: 823-6. PMID 10866208 DOI: 10.1038/35015694 |
0.528 |
|
| 2000 |
Kleiger G, Beamer LJ, Grothe R, Mallick P, Eisenberg D. The 1.7 A crystal structure of BPI: a study of how two dissimilar amino acid sequences can adopt the same fold. Journal of Molecular Biology. 299: 1019-34. PMID 10843855 DOI: 10.1006/Jmbi.2000.3805 |
0.777 |
|
| 2000 |
Ruth L, Eisenberg D, Neufeld EF. α-L-iduronidase forms semi-crystalline spherulites with amyloid-like properties Acta Crystallographica Section D: Biological Crystallography. 56: 524-528. PMID 10739940 DOI: 10.1107/S090744490000007X |
0.34 |
|
| 2000 |
Eisenberg D, Gill HS, Pfluegl GM, Rotstein SH. Structure-function relationships of glutamine synthetases. Biochimica Et Biophysica Acta. 1477: 122-45. PMID 10708854 DOI: 10.1016/S0167-4838(99)00270-8 |
0.558 |
|
| 2000 |
Mallick P, Goodwill KE, Fitz-Gibbon S, Miller JH, Eisenberg D. Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing. Proceedings of the National Academy of Sciences of the United States of America. 97: 2450-5. PMID 10706641 DOI: 10.1073/Pnas.050589297 |
0.585 |
|
| 2000 |
Rees DC, Eisenberg D. Turning a reference inside-out: Commentary on an article by Stevens and Arkin entitled: 'Are membrane proteins 'inside-out' proteins?' (Proteins 1999;36:135-143) Proteins: Structure, Function and Genetics. 38: 121-122. PMID 10656259 DOI: 10.1002/(Sici)1097-0134(20000201)38:2<121::Aid-Prot1>3.0.Co;2-M |
0.319 |
|
| 2000 |
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D. DIP: the database of interacting proteins. Nucleic Acids Research. 28: 289-91. PMID 10592249 DOI: 10.1093/Nar/28.1.289 |
0.794 |
|
| 2000 |
Landgraf R, Fischer D, Eisenberg D. Analysis of heregulin symmetry by weighted evolutionary tracing. Protein Engineering. 12: 943-51. PMID 10585499 DOI: 10.1093/Protein/12.11.943 |
0.32 |
|
| 2000 |
Goulding CW, Mallick P, Eisenberg D. Structural and Functional Studies of Proteins with Predicted “Novel” Folds in Pyrobaculum Aerophilium Biochemical Society Transactions. 28: A446-A446. DOI: 10.1042/Bst028A446B |
0.741 |
|
| 2000 |
Eisenberg D, Marcottc E, Pellegrini M, Thompson M, Rotstein S, Yeates T. From genome sequences to protein functions Biochemical Society Transactions. 28: A120-A120. DOI: 10.1042/Bst028A120A |
0.312 |
|
| 1999 |
Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. A combined algorithm for genome-wide prediction of protein function. Nature. 402: 83-6. PMID 10573421 DOI: 10.1038/47048 |
0.593 |
|
| 1999 |
Eisenberg D. Glories of protein structure Structure. 7. PMID 10545335 DOI: 10.1016/S0969-2126(00)80050-7 |
0.453 |
|
| 1999 |
Marcotte EM, Pellegrini M, Yeates TO, Eisenberg D. A census of protein repeats. Journal of Molecular Biology. 293: 151-60. PMID 10512723 DOI: 10.1006/Jmbi.1999.3136 |
0.598 |
|
| 1999 |
Eisenberg D. How Chaperones Protect Virgin Proteins Science. 285: 1021-1022. PMID 10475844 DOI: 10.1126/Science.285.5430.1021 |
0.368 |
|
| 1999 |
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science (New York, N.Y.). 285: 751-3. PMID 10427000 DOI: 10.1126/Science.285.5428.751 |
0.776 |
|
| 1999 |
Privé GG, Anderson DH, Wesson L, Cascio D, Eisenberg D. Packed protein bilayers in the 0.90 A resolution structure of a designed alpha helical bundle. Protein Science : a Publication of the Protein Society. 8: 1400-9. PMID 10422828 DOI: 10.1110/Ps.8.7.1400 |
0.358 |
|
| 1999 |
Thompson MJ, Eisenberg D. Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability Journal of Molecular Biology. 290: 595-604. PMID 10390356 DOI: 10.1006/Jmbi.1999.2889 |
0.383 |
|
| 1999 |
Fischer D, Eisenberg D. Predicting structures for genome proteins. Current Opinion in Structural Biology. 9: 208-11. PMID 10322219 DOI: 10.1016/S0959-440X(99)80029-3 |
0.346 |
|
| 1999 |
Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America. 96: 4285-8. PMID 10200254 DOI: 10.1073/Pnas.96.8.4285 |
0.6 |
|
| 1999 |
Gill HS, Pfluegl GM, Eisenberg D. Preliminary crystallographic studies on glutamine synthetase from Mycobacterium tuberculosis. Acta Crystallographica. Section D, Biological Crystallography. 55: 865-8. PMID 10089318 DOI: 10.1107/S0907444998017685 |
0.551 |
|
| 1999 |
Hart PJ, Balbirnie MM, Ogihara NL, Nersissian AM, Weiss MS, Valentine JS, Eisenberg D. A structure-based mechanism for copper-zinc superoxide dismutase. Biochemistry. 38: 2167-78. PMID 10026301 DOI: 10.1021/Bi982284U |
0.781 |
|
| 1999 |
Beamer LJ, Carroll SF, Eisenberg D. The three-dimensional structure of human bactericidal/permeability-increasing protein: implications for understanding protein-lipopolysaccharide interactions. Biochemical Pharmacology. 57: 225-9. PMID 9890549 DOI: 10.1016/S0006-2952(98)00279-2 |
0.369 |
|
| 1999 |
Marcotte EM, Eisenberg D. Chicken prion tandem repeats form a stable, protease-resistant domain. Biochemistry. 38: 667-76. PMID 9888807 DOI: 10.1021/Bi981487F |
0.622 |
|
| 1998 |
Beamer LJ, Fischer D, Eisenberg D. Detecting distant relatives of mammalian LPS-binding and lipid transport proteins. Protein Science : a Publication of the Protein Society. 7: 1643-6. PMID 9684900 DOI: 10.1002/Pro.5560070721 |
0.354 |
|
| 1998 |
Beamer LJ, Carroll SF, Eisenberg D. The BPI/LBP family of proteins: a structural analysis of conserved regions. Protein Science : a Publication of the Protein Society. 7: 906-14. PMID 9568897 DOI: 10.1002/Pro.5560070408 |
0.389 |
|
| 1998 |
Hart PJ, Liu H, Pellegrini M, Nersissian AM, Gralla EB, Valentine JS, Eisenberg D. Subunit asymmetry in the three-dimensional structure of a human CuZnSOD mutant found in familial amyotrophic lateral sclerosis. Protein Science : a Publication of the Protein Society. 7: 545-55. PMID 9541385 DOI: 10.1002/Pro.5560070302 |
0.348 |
|
| 1998 |
Liu Y, Hart PJ, Schlunegger MP, Eisenberg D. The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution. Proceedings of the National Academy of Sciences of the United States of America. 95: 3437-42. PMID 9520384 DOI: 10.1073/Pnas.95.7.3437 |
0.808 |
|
| 1997 |
Eisenberg D, Lüthy R, Bowie JU. VERIFY3D: assessment of protein models with three-dimensional profiles. Methods in Enzymology. 277: 396-404. PMID 9379925 DOI: 10.1016/S0076-6879(97)77022-8 |
0.611 |
|
| 1997 |
Anderson DH, Weiss MS, Eisenberg D. Charges, hydrogen bonds, and correlated motions in the 1 A resolution refined structure of the mating pheromone Er-1 from Euplotes raikovi. Journal of Molecular Biology. 273: 479-500. PMID 9344754 DOI: 10.1006/Jmbi.1997.1318 |
0.32 |
|
| 1997 |
Fischer D, Eisenberg D. Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. Proceedings of the National Academy of Sciences of the United States of America. 94: 11929-34. PMID 9342339 DOI: 10.1073/Pnas.94.22.11929 |
0.364 |
|
| 1997 |
Schlunegger MP, Bennett MJ, Eisenberg D. Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly. Advances in Protein Chemistry. 50: 61-122. PMID 9338079 DOI: 10.1016/S0065-3233(08)60319-8 |
0.407 |
|
| 1997 |
Bell CE, Yeates TO, Eisenberg D. Unusual conformation of nicotinamide adenine dinucleotide (NAD) bound to diphtheria toxin: a comparison with NAD bound to the oxidoreductase enzymes. Protein Science : a Publication of the Protein Society. 6: 2084-96. PMID 9336832 DOI: 10.1002/Pro.5560061004 |
0.341 |
|
| 1997 |
Bell CE, Eisenberg D. Crystal structure of diphtheria toxin bound to nicotinamide adenine dinucleotide. Advances in Experimental Medicine and Biology. 419: 35-43. PMID 9193634 DOI: 10.1007/978-1-4419-8632-0_4 |
0.351 |
|
| 1997 |
Beamer LJ, Carroll SF, Eisenberg D. Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution. Science (New York, N.Y.). 276: 1861-4. PMID 9188532 DOI: 10.1126/Science.276.5320.1861 |
0.389 |
|
| 1997 |
Rice DW, Eisenberg D. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence. Journal of Molecular Biology. 267: 1026-1038. PMID 9135128 DOI: 10.1006/Jmbi.1997.0924 |
0.377 |
|
| 1997 |
Eisenberg D. Into the black of night. Nature Structural Biology. 4: 95-7. PMID 9033584 DOI: 10.1038/Nsb0297-95 |
0.337 |
|
| 1997 |
Bell CE, Eisenberg D. Crystal structure of nucleotide-free diphtheria toxin. Biochemistry. 36: 481-8. PMID 9012663 DOI: 10.1021/Bi962214S |
0.342 |
|
| 1997 |
Ogihara NL, Weiss MS, Degrado WF, Eisenberg D. The crystal structure of the designed trimeric coiled coil coil- V(a)L(d): Implications for engineering crystals and supramolecular assemblies Protein Science. 6: 80-88. PMID 9007979 DOI: 10.1002/Pro.5560060109 |
0.386 |
|
| 1997 |
Fischer D, Eisenberg D. Protein fold recognition using sequence-derived predictions. Protein Science : a Publication of the Protein Society. 5: 947-55. PMID 8732766 DOI: 10.1002/Pro.5560050516 |
0.356 |
|
| 1997 |
Rice DW, Fischer D, Weiss R, Eisenberg D. Fold assignments for amino acid sequences of the CASP2 experiment Proteins: Structure, Function, and Genetics. 29: 113-122. DOI: 10.1002/(Sici)1097-0134(1997)1+<113::Aid-Prot15>3.0.Co;2-R |
0.331 |
|
| 1996 |
Anderson DH, Weiss MS, Eisenberg D. A challenging case for protein crystal structure determination: the mating pheromone Er-1 from Euplotes raikovi. Acta Crystallographica. Section D, Biological Crystallography. 52: 469-80. PMID 15299668 DOI: 10.1107/S0907444995014235 |
0.378 |
|
| 1996 |
Fischer D, Elofsson A, Rice D, Eisenberg D. Assessing the performance of fold recognition methods by means of a comprehensive benchmark. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 300-18. PMID 9390240 |
0.545 |
|
| 1996 |
Elofsson A, Fischer D, Rice DW, Le Grand SM, Eisenberg D. A study of combined structure/sequence profiles. Folding & Design. 1: 451-61. PMID 9080191 DOI: 10.1016/S1359-0278(96)00061-2 |
0.596 |
|
| 1996 |
Betz SF, Raleigh DP, DeGrado WF, Lovejoy B, Anderson D, Ogihara N, Eisenberg D. Crystallization of a designed peptide from a molten globule ensemble Folding and Design. 1: 57-64. PMID 9079364 DOI: 10.1016/S1359-0278(96)00012-0 |
0.375 |
|
| 1996 |
Hart PJ, Nersissian AM, Herrmann RG, Nalbandyan RM, Valentine JS, Eisenberg D. A missing link in cupredoxins: crystal structure of cucumber stellacyanin at 1.6 A resolution. Protein Science : a Publication of the Protein Society. 5: 2175-83. PMID 8931136 DOI: 10.1002/Pro.5560051104 |
0.396 |
|
| 1996 |
Fahrner RL, Dieckmann T, Harwig SS, Lehrer RI, Eisenberg D, Feigon J. Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes. Chemistry & Biology. 3: 543-50. PMID 8807886 DOI: 10.1016/S1074-5521(96)90145-3 |
0.799 |
|
| 1996 |
Bowie JU, Zhang K, Wilmanns M, Eisenberg D. Three-dimensional profiles for measuring compatibility of amino acid sequence with three-dimensional structure. Methods in Enzymology. 266: 598-616. PMID 8743708 DOI: 10.1016/S0076-6879(96)66037-6 |
0.606 |
|
| 1996 |
Fischer D, Rice D, Bowie JU, Eisenberg D. Assigning amino acid sequences to 3-dimensional protein folds. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 10: 126-36. PMID 8566533 DOI: 10.1096/Fasebj.10.1.8566533 |
0.612 |
|
| 1996 |
Vrielink A, Beamer L, Le T, Eisenberg D. Crystallization of the chaperone protein SecB. Protein Science : a Publication of the Protein Society. 4: 1651-3. PMID 8520492 DOI: 10.1002/Pro.5560040824 |
0.37 |
|
| 1996 |
Hart PJ, Nersissian AN, Valentine JS, Eisenberg D. Crystal structure of cucumber stellacyanin at 1.7 Å resolution Acta Crystallographica Section a Foundations of Crystallography. 52: C70-C70. DOI: 10.1107/S0108767396096262 |
0.312 |
|
| 1996 |
Balbirnie M, Landgraf R, Eisenberg D. Towards the crystallization of diphtheria toxin translocation mutants P345C, P345E, and P345G Acta Crystallographica Section a Foundations of Crystallography. 52: C143-C143. DOI: 10.1107/S0108767396093506 |
0.766 |
|
| 1996 |
Beamer LJ, Carroll SF, Eisenberg D. Crystal structure of BPI, the human bactericidal/permeability-increasing protein Acta Crystallographica Section a Foundations of Crystallography. 52: C166-C166. DOI: 10.1107/S0108767396092628 |
0.378 |
|
| 1996 |
Eisenberg D, Privé GG, Ogihara NL, Weiss MS, Anderson DH, Wesson L. Adventures in X-ray structure determination of protein designs Acta Crystallographica Section a Foundations of Crystallography. 52: C211-C211. DOI: 10.1107/S0108767396090915 |
0.741 |
|
| 1996 |
Ogihara NL, Weiss MS, DeGrado WF, Eisenberg D. The structure of a designed peptide refined to 2.1 Å resolution Acta Crystallographica Section a Foundations of Crystallography. 52: C215-C215. DOI: 10.1107/S0108767396090769 |
0.302 |
|
| 1996 |
Anderson DH, Weiss MS, Eisenberg D. The 1.0 Å resolution refined structure of mating pheromone Er-1 fromEuplotes raikovi Acta Crystallographica Section a Foundations of Crystallography. 52: C231-C231. DOI: 10.1107/S0108767396090149 |
0.31 |
|
| 1996 |
Pfluegl GMU, Gill H, Eisenberg D. How to avoid overfitting in refinement of structures with approximately non-crystallographic symmetry. High-resolution structure refinement of glutamine synthetase reveals evidence for homotropic cooperative binding Acta Crystallographica Section A. 52: 238-239. DOI: 10.1107/S0108767396089866 |
0.348 |
|
| 1995 |
Bennett MJ, Schlunegger MP, Eisenberg D. 3D domain swapping: a mechanism for oligomer assembly. Protein Science : a Publication of the Protein Society. 4: 2455-68. PMID 8580836 DOI: 10.1002/Pro.5560041202 |
0.351 |
|
| 1995 |
Wilmanns M, Eisenberg D. Inverse protein folding by the residue pair preference profile method: estimating the correctness of alignments of structurally compatible sequences Protein Engineering. 8: 627-639. PMID 8577692 DOI: 10.1093/Protein/8.7.627 |
0.352 |
|
| 1995 |
Elofsson A, Le Grand SM, Eisenberg D. Local moves: an efficient algorithm for simulation of protein folding. Proteins. 23: 73-82. PMID 8539252 DOI: 10.1002/Prot.340230109 |
0.548 |
|
| 1995 |
Weiss MS, Blanke SR, Collier RJ, Eisenberg D. Structure of the isolated catalytic domain of diphtheria toxin. Biochemistry. 34: 773-81. PMID 7827036 DOI: 10.1021/Bi00003A010 |
0.343 |
|
| 1995 |
Weiss MS, Anderson DH, Raffioni S, Bradshaw RA, Ortenzi C, Luporini P, Eisenberg D. A cooperative model for receptor recognition and cell adhesion: evidence from the molecular packing in the 1.6-A crystal structure of the pheromone Er-1 from the ciliated protozoan Euplotes raikovi. Proceedings of the National Academy of Sciences of the United States of America. 92: 10172-6. PMID 7479748 DOI: 10.1073/Pnas.92.22.10172 |
0.329 |
|
| 1994 |
Privé GG, Verner GE, Weitzman C, Zen KH, Eisenberg D, Kaback HR. Fusion proteins as tools for crystallization: the lactose permease from Escherichia coli. Acta Crystallographica. Section D, Biological Crystallography. 50: 375-9. PMID 15299388 DOI: 10.1107/S0907444993014301 |
0.786 |
|
| 1994 |
Bowie JU, Eisenberg D. An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function. Proceedings of the National Academy of Sciences of the United States of America. 91: 4436-40. PMID 8183927 DOI: 10.1073/Pnas.91.10.4436 |
0.643 |
|
| 1994 |
Bennett MJ, Choe S, Eisenberg D. Domain swapping: entangling alliances between proteins. Proceedings of the National Academy of Sciences of the United States of America. 91: 3127-31. PMID 8159715 DOI: 10.1073/Pnas.91.8.3127 |
0.561 |
|
| 1994 |
Zhang KYJ, Cascio D, Eisenberg D. Crystal structure of the unactivated ribulose 1,5-bisphosphate carboxylase/oxygenase complexed with a transition state analog, 2-carboxy-D- arabinitol 1,5-bisphosphate Protein Science. 3: 64-69. PMID 8142899 DOI: 10.1002/Pro.5560030109 |
0.307 |
|
| 1994 |
Zhang KYJ, Eisenberg D. The three-dimensional profile method using residue preference as a continuous function of residue environment. Protein Science. 3: 687-695. PMID 8003986 DOI: 10.1002/Pro.5560030416 |
0.354 |
|
| 1994 |
Shen WH, Choe S, Eisenberg D, Collier RJ. Participation of lysine 516 and phenylalanine 530 of diphtheria toxin in receptor recognition. The Journal of Biological Chemistry. 269: 29077-84. PMID 7961874 |
0.45 |
|
| 1994 |
Liaw SH, Eisenberg D. Structural model for the reaction mechanism of glutamine synthetase, based on five crystal structures of enzyme-substrate complexes Biochemistry. 33: 675-681. PMID 7904828 DOI: 10.1021/Bi00169A007 |
0.313 |
|
| 1994 |
Bennett MJ, Eisenberg D. Refined structure of monomeric diphtheria toxin at 2.3 A resolution. Protein Science : a Publication of the Protein Society. 3: 1464-75. PMID 7833808 DOI: 10.1002/Pro.5560030912 |
0.368 |
|
| 1994 |
Bennett MJ, Choe S, Eisenberg D. Refined structure of dimeric diphtheria toxin at 2.0 A resolution. Protein Science : a Publication of the Protein Society. 3: 1444-63. PMID 7833807 DOI: 10.1002/Pro.5560030911 |
0.564 |
|
| 1994 |
Liaw S, Jun G, Eisenberg D. Interactions of nucleotides with fully unadenylylated glutamine synthetase from Salmonella typhimurium. Biochemistry. 33: 11184-11188. PMID 7727369 DOI: 10.1021/Bi00203A014 |
0.31 |
|
| 1994 |
Zhan H, Choe S, Huynh PD, Finkelstein A, Eisenberg D, Collier RJ. Dynamic transitions of the transmembrane domain of diphtheria toxin: disulfide trapping and fluorescence proximity studies. Biochemistry. 33: 11254-63. PMID 7537085 DOI: 10.1021/Bi00203A022 |
0.508 |
|
| 1993 |
Lovejoy B, Choe S, Cascio D, McRorie DK, DeGrado WF, Eisenberg D. Crystal structure of a synthetic triple-stranded alpha-helical bundle. Science (New York, N.Y.). 259: 1288-93. PMID 8446897 DOI: 10.1126/Science.8446897 |
0.556 |
|
| 1993 |
Wilmanns M, Eisenberg D. Three-dimensional profiles from residue-pair preferences: identification of sequences with beta/alpha-barrel fold. Proceedings of the National Academy of Sciences of the United States of America. 90: 1379-1383. PMID 8433995 DOI: 10.1073/Pnas.90.4.1379 |
0.398 |
|
| 1993 |
Fujii G, Selsted ME, Eisenberg D. Defensins promote fusion and lysis of negatively charged membranes Protein Science. 2: 1301-1312. PMID 8401215 DOI: 10.1002/Pro.5560020813 |
0.314 |
|
| 1993 |
Schreuder HA, Knight S, Curmi PM, Andersson I, Cascio D, Sweet RM, Brändén CI, Eisenberg D. Crystal structure of activated tobacco rubisco complexed with the reaction-intermediate analogue 2-carboxy-arabinitol 1,5-bisphosphate. Protein Science : a Publication of the Protein Society. 2: 1136-46. PMID 8358296 DOI: 10.1002/Pro.5560020708 |
0.357 |
|
| 1993 |
Liaw SH, Jun G, Eisenberg D. Extending the diffraction limit of protein crystals: the example of glutamine synthetase from Salmonella typhimurium in the presence of its cofactor ATP. Protein Science. 2: 470-471. PMID 8095834 DOI: 10.1002/Pro.5560020319 |
0.343 |
|
| 1993 |
Hill CP, Osslund TD, Eisenberg D. The structure of granulocyte-colony-stimulating factor and its relationship to other growth factors Proceedings of the National Academy of Sciences of the United States of America. 90: 5167-5171. PMID 7685117 DOI: 10.1073/Pnas.90.11.5167 |
0.362 |
|
| 1993 |
Bowie JU, Eisenberg D. Inverted protein structure prediction Current Opinion in Structural Biology. 3: 437-444. DOI: 10.1016/S0959-440X(05)80118-6 |
0.63 |
|
| 1992 |
O'Keefe DO, Cabiaux V, Choe S, Eisenberg D, Collier RJ. pH-dependent insertion of proteins into membranes: B-chain mutation of diphtheria toxin that inhibits membrane translocation, Glu-349----Lys. Proceedings of the National Academy of Sciences of the United States of America. 89: 6202-6. PMID 1631109 DOI: 10.1073/Pnas.89.13.6202 |
0.494 |
|
| 1992 |
Choe S, Bennett MJ, Fujii G, Curmi PM, Kantardjieff KA, Collier RJ, Eisenberg D. The crystal structure of diphtheria toxin. Nature. 357: 216-22. PMID 1589020 DOI: 10.1038/357216A0 |
0.56 |
|
| 1992 |
Lüthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature. 356: 83-5. PMID 1538787 DOI: 10.1038/356083A0 |
0.615 |
|
| 1992 |
Liu Y, Peter D, Roghani A, Schuldiner S, Privé GG, Eisenberg D, Brecha N, Edwards RH. A cDNA that suppresses MPP+ toxicity encodes a vesicular amine transporter. Cell. 70: 539-51. PMID 1505023 DOI: 10.1016/0092-8674(92)90425-C |
0.712 |
|
| 1992 |
Wesson L, Eisenberg D. Atomic solvation parameters applied to molecular dynamics of proteins in solution. Protein Science : a Publication of the Protein Society. 1: 227-35. PMID 1304905 DOI: 10.1002/Pro.5560010204 |
0.319 |
|
| 1992 |
Wilcox W, Eisenberg D. Thermodynamics of melittin tetramerization determined by circular dichroism and implications for protein folding. Protein Science. 1: 641-653. PMID 1304363 DOI: 10.1002/Pro.5560010510 |
0.319 |
|
| 1992 |
Fujii G, Horvath S, Woodward S, Eiserling F, Eisenberg D. A molecular model for membrane fusion based on solution studies of an amphiphilic peptide from HIV gp41. Protein Science : a Publication of the Protein Society. 1: 1454-64. PMID 1303764 DOI: 10.1002/Pro.5560011107 |
0.308 |
|
| 1992 |
Eisenberg D. John Edsall and Protein Science. Protein Science. 1: 1399-1401. PMID 1303760 DOI: 10.1002/Pro.5560011101 |
0.332 |
|
| 1992 |
Eisenberg D, Bowie JU, Lüthy R, Choe S. Three-dimensional profiles for analysing protein sequence-structure relationships. Faraday Discussions. 25-34. PMID 1290936 DOI: 10.1039/Fd9929300025 |
0.698 |
|
| 1992 |
Curmi PMG, Cascio D, Sweet RM, Eisenberg D, Schreuder H. Crystal structure of the unactivated form of ribulose-1,5-bisphosphate carboxylase/oxygenase from tobacco refined at 2.0-A resolution. Journal of Biological Chemistry. 267: 16980-16989. DOI: 10.2210/Pdb3Rub/Pdb |
0.353 |
|
| 1991 |
Hill CP, Yee J, Selsted ME, Eisenberg D. Crystal structure of defensin HNP-3, an amphiphilic dimer: Mechanisms of membrane permeabilization Science. 251: 1481-1485. PMID 2006422 DOI: 10.1126/Science.2006422 |
0.324 |
|
| 1991 |
Lüthy R, McLachlan AD, Eisenberg D. Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities. Proteins. 10: 229-39. PMID 1881879 DOI: 10.1002/Prot.340100307 |
0.409 |
|
| 1991 |
Bowie JU, Lüthy R, Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science (New York, N.Y.). 253: 164-70. PMID 1853201 |
0.603 |
|
| 1991 |
Fujii G, Choe SH, Bennett MJ, Eisenberg D. Crystallization of diphtheria toxin. Journal of Molecular Biology. 222: 861-4. PMID 1762153 DOI: 10.1016/0022-2836(91)90577-S |
0.572 |
|
| 1990 |
Hill CP, Anderson DH, Wesson L, DeGrado WF, Eisenberg D. Crystal structure of alpha 1: implications for protein design. Science (New York, N.Y.). 249: 543-6. PMID 2382133 DOI: 10.1126/Science.2382133 |
0.364 |
|
| 1990 |
Eisenberg D, Wesson M. The most highly amphiphilic α-helices include two amino acid segments in human immunodeficiency virus glycoprotein 41 Biopolymers. 29: 171-177. PMID 2328285 DOI: 10.1002/Bip.360290122 |
0.304 |
|
| 1990 |
Gribskov M, Lothy R, Eisenberg D. [9] Profile analysis Methods in Enzymology. 183: 146-159. PMID 2314273 DOI: 10.1016/0076-6879(90)83011-W |
0.338 |
|
| 1990 |
Anderson D, Raffioni S, Luporini P, Bradshaw RA, Eisenberg D. Crystallization of the Euplotes raikovi mating pheromone Er-1 Journal of Molecular Biology. 216: 1-2. PMID 2121998 DOI: 10.1016/S0022-2836(05)80055-5 |
0.333 |
|
| 1989 |
Eisenberg D, Hill CP. Protein crystallography: more surprises ahead. Trends in Biochemical Sciences. 14: 260-264. PMID 2672444 DOI: 10.1016/0968-0004(89)90059-5 |
0.396 |
|
| 1989 |
Rees DC, DeAntonio L, Eisenberg D. Hydrophobic organization of membrane proteins. Science (New York, N.Y.). 245: 510-3. PMID 2667138 DOI: 10.1126/Science.2667138 |
0.359 |
|
| 1989 |
Yamashita MM, Almassy RJ, Janson CA, Cascio D, Eisenberg D. Refined atomic model of glutamine synthetase at 3.5 Å resolution Journal of Biological Chemistry. 264: 17681-17690. PMID 2572586 DOI: 10.2210/Pdb2Gls/Pdb |
0.346 |
|
| 1989 |
Gribskov M, Eisenberg D. 12 – Detection Of Protein Structural Features With Profile Analysis1 Techniques in Protein Chemistry. 108-117. DOI: 10.1016/B978-0-12-682001-0.50018-X |
0.37 |
|
| 1988 |
Eisenberg D, Wilcox W, Eshita SM, Pryciak PM, Ho SP, DeGrado WF. The design, synthesis, and crystallization of an alpha-helical peptide. Proteins. 1: 16-22. PMID 3449847 DOI: 10.1002/Prot.340010105 |
0.304 |
|
| 1988 |
Gribskov M, Homyak M, Edenfield J, Eisenberg D. Profile scanning for three-dimensional structural patterns in protein sequences. Computer Applications in the Biosciences : Cabios. 4: 61-6. PMID 3383004 DOI: 10.1093/Bioinformatics/4.1.61 |
0.325 |
|
| 1988 |
Chapman MS, Suh SW, Curmi PM, Cascio D, Smith WW, Eisenberg DS. Tertiary structure of plant RuBisCO: domains and their contacts. Science (New York, N.Y.). 241: 71-4. PMID 3133767 DOI: 10.1126/Science.3133767 |
0.592 |
|
| 1987 |
Suh SW, Cascio D, Chapman MS, Eisenberg D. A crystal form of ribulose-1,5-bisphosphate carboxylase/oxygenase from Nicotiana tabacum in the activated state. Journal of Molecular Biology. 197: 363-5. PMID 3681999 DOI: 10.1016/0022-2836(87)90129-X |
0.62 |
|
| 1987 |
Chapman MS, Suh SW, Cascio D, Smith WW, Eisenberg D. Sliding-layer conformational change limited by the quaternary structure of plant RuBisCO. Nature. 329: 354-6. PMID 3627277 DOI: 10.1038/329354A0 |
0.624 |
|
| 1987 |
Gribskov M, McLachlan AD, Eisenberg D. Profile analysis: detection of distantly related proteins. Proceedings of the National Academy of Sciences of the United States of America. 84: 4355-8. PMID 3474607 DOI: 10.1073/Pnas.84.13.4355 |
0.314 |
|
| 1987 |
Eisenberg D, Almassy RJ, Janson CA, Chapman MS, Suh SW, Cascio D, Smith WW. Some evolutionary relationships of the primary biological catalysts glutamine synthetase and RuBisCO. Cold Spring Harbor Symposia On Quantitative Biology. 52: 483-90. PMID 2900091 DOI: 10.1101/Sqb.1987.052.01.055 |
0.545 |
|
| 1987 |
Terwilliger TC, Kim S, Eisenberg D. Generalized method of determining heavy-atom positions using the difference Patterson function Acta Crystallographica Section a Foundations of Crystallography. 43: 1-5. DOI: 10.1107/S0108767387099999 |
0.514 |
|
| 1986 |
Eisenberg D, McLachlan AD. Solvation energy in protein folding and binding. Nature. 319: 199-203. PMID 3945310 DOI: 10.1038/319199A0 |
0.335 |
|
| 1986 |
Eisenberg D, Wilcox W, McLachlan AD. Hydrophobicity and amphiphilicity in protein structure. Journal of Cellular Biochemistry. 31: 11-7. PMID 3722276 DOI: 10.1002/Jcb.240310103 |
0.423 |
|
| 1986 |
Janson CA, Kayne PS, Almassy RJ, Grunstein M, Eisenberg D. Sequence of glutamine synthetase from Salmonella typhimurium and implications for the protein structure Gene. 46: 297-300. PMID 2879772 DOI: 10.1016/0378-1119(86)90415-4 |
0.304 |
|
| 1986 |
Chapman MS, Smith WW, Suh SW, Cascio D, Howard A, Hamlin R, Xuong NH, Eisenberg D. Structural studies of Rubisco from tobacco. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 313: 367-78. PMID 2878449 |
0.565 |
|
| 1984 |
Eisenberg D, Weiss RM, Terwilliger TC. The hydrophobic moment detects periodicity in protein hydrophobicity Proceedings of the National Academy of Sciences of the United States of America. 81: 140-144. PMID 6582470 DOI: 10.1073/Pnas.81.1.140 |
0.452 |
|
| 1984 |
Eisenberg D, Schwarz E, Komaromy M, Wall R. Analysis of membrane and surface protein sequences with the hydrophobic moment plot Journal of Molecular Biology. 179: 125-142. PMID 6502707 DOI: 10.1016/0022-2836(84)90309-7 |
0.331 |
|
| 1984 |
Eisenberg D. Three-dimensional structure of membrane and surface proteins. Annual Review of Biochemistry. 53: 595-623. PMID 6383201 DOI: 10.1146/Annurev.Bi.53.070184.003115 |
0.334 |
|
| 1984 |
Janson CA, Almassy RJ, Westbrook EM, Eisenberg D. Isolation and crystallization of unadenylylated glutamine synthetase from Salmonella typhimurium. Archives of Biochemistry and Biophysics. 228: 512-8. PMID 6141768 DOI: 10.1016/0003-9861(84)90017-1 |
0.328 |
|
| 1984 |
Frey TG, Eisenberg D. Formation and structure of 1-, 3- and 6+1-stranded helical cables of glutamine synthetase International Journal of Biological Macromolecules. 6: 2-12. DOI: 10.1016/0141-8130(84)90040-0 |
0.379 |
|
| 1983 |
Sweet RM, Eisenberg D. Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure. Journal of Molecular Biology. 171: 479-488. PMID 6663622 DOI: 10.1016/0022-2836(83)90041-4 |
0.381 |
|
| 1982 |
Eisenberg D, Weiss RM, Terwilliger TC. The helical hydrophobic moment: a measure of the amphiphilicity of a helix. Nature. 299: 371-4. PMID 7110359 DOI: 10.1038/299371A0 |
0.351 |
|
| 1982 |
Terwilliger TC, Weissman L, Eisenberg D. The structure of melittin in the form I crystals and its implication for melittin's lytic and surface activities Biophysical Journal. 37: 353-361. PMID 7055627 DOI: 10.1016/S0006-3495(82)84683-3 |
0.33 |
|
| 1982 |
Eisenberg D, Weiss RM, Terwilliger TC, Wilcox W. Hydrophobic moments and protein structure Faraday Symposia of the Chemical Society. 17: 109. DOI: 10.1039/Fs9821700109 |
0.424 |
|
| 1981 |
Terwilliger TC, Eisenberg D. The structure of melittin. I. Structure determination and partial refinement. Journal of Biological Chemistry. 257: 6010-6015. PMID 7076661 DOI: 10.2210/Pdb1Mlt/Pdb |
0.394 |
|
| 1980 |
Eisenberg D, Terwilliger TC, Tsui F. Structural studies of bee melittin Biophysical Journal. 32: 252-254. PMID 19431375 DOI: 10.1016/S0006-3495(80)84953-8 |
0.368 |
|
| 1980 |
Johal S, Bourque DP, Smith WW, Suh SW, Eisenberg D. Crystallization and characterization of ribulose 1,5-bisphosphate carboxylase/oxygenase from eight plant species. The Journal of Biological Chemistry. 255: 8873-80. PMID 7410399 |
0.547 |
|
| 1980 |
Burton ZF, Eisenberg D. A procedure for rapid isolation of both groE protein and glutamine synthetase from E. coli Archives of Biochemistry and Biophysics. 205: 478-488. PMID 6110407 DOI: 10.1016/0003-9861(80)90130-7 |
0.321 |
|
| 1979 |
Frank J, Goldfarb W, Eisenberg D, Baker TS. Addendum to "reconstruction of glutamine synthetase using computer averaging". Ultramicroscopy. 4: 247. PMID 38551 DOI: 10.1016/S0304-3991(79)90319-X |
0.456 |
|
| 1978 |
Eisenberg D, Baker TS, Suh SW, Smith WW. Structural studies of ribulose 1,5-bisphosphate carboxylase/oxygenase. Basic Life Sciences. 11: 271-81. PMID 747602 DOI: 10.1007/978-1-4684-8106-8_17 |
0.699 |
|
| 1978 |
Frank J, Goldfarb W, Eisenberg D, Baker TS. Reconstruction of glutamine synthetase using computer averaging. Ultramicroscopy. 3: 283-90. PMID 32653 DOI: 10.1016/S0304-3991(78)80038-2 |
0.481 |
|
| 1978 |
Heidner EG, Frey TG, Held U, Weissman LJ, Fenna RE, Lei M, Harel M, Kabsch H, Sweet RM, Eisenberg D. New crystal forms of glutamine synthetase and implications for the molecular structure. Journal of Molecular Biology. 122: 163-73. PMID 28418 DOI: 10.1016/0022-2836(78)90033-5 |
0.325 |
|
| 1977 |
Baker TS, Eisenberg D, Eiserling F. Ribulose bisphosphate carboxylase: a two-layered, square-shaped molecule of symmetry 422. Science (New York, N.Y.). 196: 293-5. PMID 17756097 DOI: 10.1126/Science.196.4287.293 |
0.529 |
|
| 1977 |
Baker TS, Suh SW, Eisenberg D. Structure of ribulose-1,5-bisphosphate carboxylase-oxygenase: Form III crystals. Proceedings of the National Academy of Sciences of the United States of America. 74: 1037-41. PMID 16592389 DOI: 10.1073/Pnas.74.3.1037 |
0.705 |
|
| 1976 |
Frey TG, Eisenberg D, Eiserling FA. Glutamine synthetase forms three- and seven-stranded helical cables. Proceedings of the National Academy of Sciences of the United States of America. 72: 3402-6. PMID 242004 DOI: 10.1073/Pnas.72.9.3402 |
0.307 |
|
| 1976 |
Kabsch W, Kabsch H, Eisenberg D. Packing in a new crystalline form of glutamine synthetase from Escherichia coli. Journal of Molecular Biology. 100: 283-291. PMID 3654 DOI: 10.1016/S0022-2836(76)80064-2 |
0.301 |
|
| 1975 |
Scanlon WJ, Eisenberg D. Solvation of crystalline proteins: theory and its application to available data. Journal of Molecular Biology. 98: 485-502. PMID 1195396 DOI: 10.1016/S0022-2836(75)80082-9 |
0.348 |
|
| 1975 |
Baker TS, Eisenberg D, Eiserling FA, Weissman L. The structure of form I crystals of D-ribulose-1,5-diphosphate carboxylase. Journal of Molecular Biology. 91: 391-9. PMID 1152035 DOI: 10.1016/0022-2836(75)90267-3 |
0.541 |
|
| 1971 |
Dickerson RE, Takano T, Eisenberg D, Kallai OB, Samson L, Cooper A, Margoliash E. Ferricytochrome c. I. General features of the horse and bonito proteins at 2.8 A resolution. The Journal of Biological Chemistry. 246: 1511-35. PMID 5545094 |
0.652 |
|
| 1971 |
Heidner EG, Weber BH, Eisenberg D. Subunit Structure of Aldolase Science. 171: 677-680. PMID 5099718 DOI: 10.1126/Science.171.3972.677 |
0.345 |
|
| 1969 |
Dickerson RE, Eisenberg D, Varnum J, Kopka ML. PtCl24-: a methionine-specific label for protein crystallography. Journal of Molecular Biology. 45: 77-84. PMID 5387946 |
0.665 |
|
| 1969 |
Weinzierl JE, Eisenberg D, Dickerson RE. Refinement of protein phases with the Karle–Hauptman tangent formula Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry. 25: 380-387. DOI: 10.1107/S0567740869002275 |
0.672 |
|
| 1967 |
Dickerson RE, Kopka ML, Weinzierl J, Varnum J, Eisenberg D, Margoliash E. Location of the heme in horse heart ferricytochrome c by x-ray diffraction. The Journal of Biological Chemistry. 242: 3015-8. PMID 6027262 |
0.606 |
|
| 1963 |
EISENBERG DS, EDSALL JT. SPECTROPHOTOMETRIC TITRATIONS OF HUMAN SERUM ALBUMIN AND REDUCED CARBOXYMETHYLATED ALBUMIN. Science (New York, N.Y.). 142: 50-1. PMID 14057350 DOI: 10.1126/Science.142.3588.50 |
0.478 |
|
| 1963 |
Eisenberg D, Coulson CA. Energy of formation of d-defects in ice Nature. 199: 368-369. DOI: 10.1038/199368B0 |
0.463 |
|
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