Atsushi Mochizuki, PhD - Publications

Affiliations: 
RIKEN 
Area:
Theoretical Biology, systems Biology

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Kurosawa G, Fujioka A, Koinuma S, Mochizuki A, Shigeyoshi Y. Temperature-amplitude coupling for stable biological rhythms at different temperatures. Plos Computational Biology. 13: e1005501. PMID 28594845 DOI: 10.1371/journal.pcbi.1005501  0.6
2015 Ishihara J, Tachikawa M, Iwasaki H, Mochizuki A. Mathematical study of pattern formation accompanied by heterocyst differentiation in multicellular cyanobacterium. Journal of Theoretical Biology. 371: 9-23. PMID 25665721 DOI: 10.1016/j.jtbi.2015.01.034  1
2015 Mochizuki A, Fiedler B. Sensitivity of chemical reaction networks: a structural approach. 1. Examples and the carbon metabolic network. Journal of Theoretical Biology. 367: 189-202. PMID 25451520 DOI: 10.1016/j.jtbi.2014.10.025  1
2015 Hayakawa Y, Tachikawa M, Mochizuki A. Mathematical study for the mechanism of vascular and spot patterns by auxin and pin dynamics in plant development. Journal of Theoretical Biology. 365: 12-22. PMID 25303888 DOI: 10.1016/j.jtbi.2014.09.039  1
2014 Ichikawa T, Nakazato K, Keller PJ, Kajiura-Kobayashi H, Stelzer EH, Mochizuki A, Nonaka S. Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools. Nature Protocols. 9: 575-85. PMID 24525751 DOI: 10.1038/nprot.2014.035  1
2013 Nonomura K, Yamaguchi Y, Hamachi M, Koike M, Uchiyama Y, Nakazato K, Mochizuki A, Sakaue-Sawano A, Miyawaki A, Yoshida H, Kuida K, Miura M. Local apoptosis modulates early mammalian brain development through the elimination of morphogen-producing cells. Developmental Cell. 27: 621-34. PMID 24369835 DOI: 10.1016/j.devcel.2013.11.015  1
2013 Ichikawa T, Nakazato K, Keller PJ, Kajiura-Kobayashi H, Stelzer EH, Mochizuki A, Nonaka S. Live imaging of whole mouse embryos during gastrulation: migration analyses of epiblast and mesodermal cells. Plos One. 8: e64506. PMID 23861733 DOI: 10.1371/journal.pone.0064506  1
2013 Mochizuki A, Fiedler B, Kurosawa G, Saito D. Dynamics and control at feedback vertex sets. II: a faithful monitor to determine the diversity of molecular activities in regulatory networks. Journal of Theoretical Biology. 335: 130-46. PMID 23774067 DOI: 10.1016/j.jtbi.2013.06.009  1
2013 Suzuki K, Sakamoto H, Shinozaki Y, Tabata J, Watanabe T, Mochizuki A, Koitabashi M, Fujii T, Tsushima S, Kitamoto HK. Affinity purification and characterization of a biodegradable plastic-degrading enzyme from a yeast isolated from the larval midgut of a stag beetle, Aegus laevicollis. Applied Microbiology and Biotechnology. 97: 7679-88. PMID 23224497 DOI: 10.1007/s00253-012-4595-x  0.32
2013 Ishihara J, Tachikawa M, Mochizuki A, Sako Y, Iwasaki H, Morita S. Raman imaging of the diverse states of the filamentous cyanobacteria Proceedings of Spie - the International Society For Optical Engineering. 8879. DOI: 10.1117/12.2018694  1
2013 Fiedler B, Mochizuki A, Kurosawa G, Saito D. Dynamics and Control at Feedback Vertex Sets. I: Informative and Determining Nodes in Regulatory Networks Journal of Dynamics and Differential Equations. 25: 563-604. DOI: 10.1007/s10884-013-9312-7  1
2012 Nakamura T, Saito D, Kawasumi A, Shinohara K, Asai Y, Takaoka K, Dong F, Takamatsu A, Belo JA, Mochizuki A, Hamada H. Fluid flow and interlinked feedback loops establish left-right asymmetric decay of Cerl2 mRNA. Nature Communications. 3: 1322. PMID 23271656 DOI: 10.1038/ncomms2319  1
2012 Takasu NN, Kurosawa G, Tokuda IT, Mochizuki A, Todo T, Nakamura W. Circadian regulation of food-anticipatory activity in molecular clock-deficient mice. Plos One. 7: e48892. PMID 23145013 DOI: 10.1371/journal.pone.0048892  1
2012 Fujishima K, Horie R, Mochizuki A, Kengaku M. Principles of branch dynamics governing shape characteristics of cerebellar Purkinje cell dendrites. Development (Cambridge, England). 139: 3442-55. PMID 22912417 DOI: 10.1242/dev.081315  1
2011 Kubota Y, Karube F, Nomura M, Gulledge AT, Mochizuki A, Schertel A, Kawaguchi Y. Conserved properties of dendritic trees in four cortical interneuron subtypes. Scientific Reports. 1: 89. PMID 22355608 DOI: 10.1038/srep00089  1
2010 Mochizuki A, Saito D. Analyzing steady states of dynamics of bio-molecules from the structure of regulatory networks. Journal of Theoretical Biology. 266: 323-35. PMID 20553943 DOI: 10.1016/j.jtbi.2010.06.007  1
2010 Takahashi J, Ohbayashi A, Oginuma M, Saito D, Mochizuki A, Saga Y, Takada S. Analysis of Ripply1/2-deficient mouse embryos reveals a mechanism underlying the rostro-caudal patterning within a somite. Developmental Biology. 342: 134-45. PMID 20346937 DOI: 10.1016/j.ydbio.2010.03.015  1
2010 Shimono K, Sugimura K, Kengaku M, Uemura T, Mochizuki A. Computational modeling of dendritic tiling by diffusible extracellular suppressor. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 15: 137-49. PMID 20070856 DOI: 10.1111/j.1365-2443.2009.01367.x  1
2009 Nakazato K, Mochizuki A. Steepness of thermal gradient is essential to obtain a unified view of thermotaxis in C. elegans. Journal of Theoretical Biology. 260: 56-65. PMID 19501104 DOI: 10.1016/j.jtbi.2009.05.027  1
2008 Ayabe Y, Tuda M, Mochizuki A. Benefits of repeated mine trackings by a parasitoid when the host leafminer has a tortuous feeding pattern Animal Behaviour. 76: 1795-1803. DOI: 10.1016/j.anbehav.2008.07.026  1
2007 Otsuji M, Ishihara S, Co C, Kaibuchi K, Mochizuki A, Kuroda S. A mass conserved reaction-diffusion system captures properties of cell polarity. Plos Computational Biology. 3: e108. PMID 17559299 DOI: 10.1371/journal.pcbi.0030108  1
2007 Ishihara S, Otsuji M, Mochizuki A. Transient and steady state of mass-conserved reaction-diffusion systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 015203. PMID 17358214 DOI: 10.1103/PhysRevE.75.015203  1
2006 Nakamura T, Mine N, Nakaguchi E, Mochizuki A, Yamamoto M, Yashiro K, Meno C, Hamada H. Generation of robust left-right asymmetry in the mouse embryo requires a self-enhancement and lateral-inhibition system. Developmental Cell. 11: 495-504. PMID 17011489 DOI: 10.1016/j.devcel.2006.08.002  1
2006 Takigawa-Imamura H, Mochizuki A. Predicting regulation of the phosphorylation cycle of KaiC clock protein using mathematical analysis. Journal of Biological Rhythms. 21: 405-16. PMID 16998160 DOI: 10.1177/0748730406291329  1
2006 Fujita H, Mochizuki A. The origin of the diversity of leaf venation pattern. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 235: 2710-21. PMID 16894601 DOI: 10.1002/dvdy.20908  1
2006 Fujita H, Mochizuki A. Pattern formation of leaf veins by the positive feedback regulation between auxin flow and auxin efflux carrier. Journal of Theoretical Biology. 241: 541-51. PMID 16510156 DOI: 10.1016/j.jtbi.2005.12.016  1
2006 Takigawa-Imamura H, Mochizuki A. Transcriptional autoregulation by phosphorylated and non-phosphorylated KaiC in cyanobacterial circadian rhythms. Journal of Theoretical Biology. 241: 178-92. PMID 16387328 DOI: 10.1016/j.jtbi.2005.11.013  1
2006 Mochizuki A, Yahara K, Kobayashi I, Iwasa Y. Genetic addiction: selfish gene's strategy for symbiosis in the genome. Genetics. 172: 1309-23. PMID 16299387 DOI: 10.1534/genetics.105.042895  1
2005 Feugier FG, Mochizuki A, Iwasa Y. Self-organization of the vascular system in plant leaves: inter-dependent dynamics of auxin flux and carrier proteins. Journal of Theoretical Biology. 236: 366-75. PMID 15899502 DOI: 10.1016/j.jtbi.2005.03.017  1
2005 Mochizuki A. An analytical study of the number of steady states in gene regulatory networks. Journal of Theoretical Biology. 236: 291-310. PMID 15885706 DOI: 10.1016/j.jtbi.2005.03.015  1
2003 Takano R, Mochizuki A, Iwasa Y. Possibility of tissue separation caused by cell adhesion. Journal of Theoretical Biology. 221: 459-74. PMID 12713934 DOI: 10.1006/jtbi.2003.3193  1
2003 Shoji H, Mochizuki A, Iwasa Y, Hirata M, Watanabe T, Hioki S, Kondo S. Origin of directionality in the fish stripe pattern. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 226: 627-33. PMID 12666200 DOI: 10.1002/dvdy.10277  1
2003 Tohya S, Mochizuki A, Iwasa Y. Difference in the retinal cone mosaic pattern between zebrafish and medaka: cell-rearrangement model. Journal of Theoretical Biology. 221: 289-300. PMID 12628235 DOI: 10.1006/jtbi.2003.3192  1
2002 Kurosawa G, Mochizuki A, Iwasa Y. Comparative study of circadian clock models, in search of processes promoting oscillation. Journal of Theoretical Biology. 216: 193-208. PMID 12079371 DOI: 10.1006/jtbi.2002.2546  1
2002 Mochizuki A. Pattern formation of the cone mosaic in the zebrafish retina: a cell rearrangement model. Journal of Theoretical Biology. 215: 345-61. PMID 12054842 DOI: 10.1006/jtbi.2001.2508  1
2002 Shoji H, Iwasa Y, Mochizuki A, Kondo S. Directionality of stripes formed by anisotropic reaction-diffusion models. Journal of Theoretical Biology. 214: 549-61. PMID 11851367 DOI: 10.1006/jtbi.2001.2480  1
2002 Honda H, Mochizuki A. Formation and maintenance of distinctive cell patterns by coexpression of membrane-bound ligands and their receptors. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 223: 180-92. PMID 11836783 DOI: 10.1002/dvdy.10042  1
1999 Tohya S, Mochizuki A, Iwasa Y. Formation of cone mosaic of zebrafish retina. Journal of Theoretical Biology. 200: 231-44. PMID 10504288 DOI: 10.1006/jtbi.1999.0990  1
1999 Iwasa Y, Mochizuki A, Takeda Y. The evolution of genomic imprinting: Abortion and overshoot explain aberrations Evolutionary Ecology Research. 1: 129-148.  1
1998 Takesue A, Mochizuki A, Iwasa Y. Cell-differentiation rules that generate regular mosaic patterns: modelling motivated by cone mosaic formation in fish retina. Journal of Theoretical Biology. 194: 575-86. PMID 9790831 DOI: 10.1006/jtbi.1998.0777  1
1998 Tohya S, Mochizuki A, Imayama S, Iwasa Y. On rugged shape of skin tumor (basal cell carcinoma). Journal of Theoretical Biology. 194: 65-78. PMID 9778425 DOI: 10.1006/jtbi.1998.0743  1
1998 Mochizuki A, Wada N, Ide H, Iwasa Y. Cell-cell adhesion in limb-formation, estimated from photographs of cell sorting experiments based on a spatial stochastic model. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 211: 204-14. PMID 9520108 DOI: 10.1002/(SICI)1097-0177(199803)211:3<204::AID-AJA2>3.0.CO;2-L  1
1997 Kawasaki K, Mochizuki A, Matsushita M, Umeda T, Shigesada N. Modeling spatio-temporal patterns generated by Bacillus subtilis. Journal of Theoretical Biology. 188: 177-85. PMID 9379672 DOI: 10.1006/jtbi.1997.0462  1
1996 Mochizuki A, Takeda Y, Iwasa Y. The evolution of genomic imprinting. Genetics. 144: 1283-95. PMID 8913768  1
1996 Mochizuki A, Iwasa Y, Takeda Y. A stochastic model for cell sorting and measuring cell-cell adhesion Journal of Theoretical Biology. 179: 129-146. DOI: 10.1006/jtbi.1996.0054  1
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