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Karsten Borgwardt - Publications

Affiliations: 
Eidgenössische Technische Hochschule Zürich, Zürich, ZH, Switzerland 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Muzio G, O'Bray L, Meng-Papaxanthos L, Klatt J, Fischer K, Borgwardt K. networkGWAS: a network-based approach to discover genetic associations. Bioinformatics (Oxford, England). 39. PMID 37285313 DOI: 10.1093/bioinformatics/btad370  0.306
2020 Höllerer S, Papaxanthos L, Gumpinger AC, Fischer K, Beisel C, Borgwardt K, Benenson Y, Jeschek M. Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping. Nature Communications. 11: 3551. PMID 32669542 DOI: 10.1038/S41467-020-17222-4  0.341
2020 Gumpinger AC, Rieck B, Grimm DG, Borgwardt K. Network-guided search for genetic heterogeneity between gene pairs. Bioinformatics (Oxford, England). PMID 32573681 DOI: 10.1093/Bioinformatics/Btaa581  0.376
2019 Togninalli M, Seren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research. PMID 31642487 DOI: 10.1093/Nar/Gkz925  0.581
2018 Gumpinger AC, Roqueiro D, Grimm DG, Borgwardt KM. Methods and Tools in Genome-wide Association Studies. Methods in Molecular Biology (Clifton, N.J.). 1819: 93-136. PMID 30421401 DOI: 10.1007/978-1-4939-8618-7_5  0.369
2017 Togninalli M, Seren Ü, Meng D, Fitz J, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research. PMID 29059333 DOI: 10.1093/Nar/Gkx954  0.56
2017 Llinares-López F, Papaxanthos L, Bodenham D, Roqueiro D, Investigators C, Borgwardt K. Genome-wide genetic heterogeneity discovery with categorical covariates. Bioinformatics (Oxford, England). PMID 28200033 DOI: 10.1093/bioinformatics/btx071  0.332
2016 Grimm DG, Roqueiro D, Salome P, Kleeberger S, Greshake B, Zhu W, Liu C, Lippert C, Stegle O, Schölkopf B, Weigel D, Borgwardt K. easyGWAS: A Cloud-based Platform for Comparing the Results of Genome-wide Association Studies. The Plant Cell. PMID 27986896 DOI: 10.1105/Tpc.16.00551  0.505
2016 Seren Ü, Grimm D, Fitz J, Weigel D, Nordborg M, Borgwardt K, Korte A. AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research. PMID 27924043 DOI: 10.1093/Nar/Gkw986  0.531
2016 Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D. Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27803326 DOI: 10.1073/Pnas.1615268113  0.491
2016 McGaughran A, Rödelsperger C, Grimm DG, Meyer JM, Moreno E, Morgan K, Leaver M, Serobyan V, Rakitsch B, Borgwardt KM, Sommer RJ. Genomic profiles of diversification and genotype-phenotype association in island nematode lineages. Molecular Biology and Evolution. PMID 27189551 DOI: 10.1093/Molbev/Msw093  0.355
2015 Llinares-López F, Grimm DG, Bodenham DA, Gieraths U, Sugiyama M, Rowan B, Borgwardt K. Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. Bioinformatics (Oxford, England). 31: i240-i249. PMID 26072488 DOI: 10.1093/Bioinformatics/Btv263  0.436
2015 Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. Plos Genetics. 11: e1004920. PMID 25569172 DOI: 10.1371/Journal.Pgen.1004920  0.55
2015 Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Epigenetic variation in a nearly isogenic population. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004920.G002  0.445
2013 Azencott CA, Grimm D, Sugiyama M, Kawahara Y, Borgwardt KM. Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics (Oxford, England). 29: i171-9. PMID 23812981 DOI: 10.1093/Bioinformatics/Btt238  0.307
2013 Drewe P, Stegle O, Hartmann L, Kahles A, Bohnert R, Wachter A, Borgwardt K, Rätsch G. Accurate detection of differential RNA processing. Nucleic Acids Research. 41: 5189-98. PMID 23585274 DOI: 10.1093/Nar/Gkt211  0.305
2013 Fusi N, Lippert C, Borgwardt K, Lawrence ND, Stegle O. Detecting regulatory gene-environment interactions with unmeasured environmental factors. Bioinformatics (Oxford, England). 29: 1382-9. PMID 23559640 DOI: 10.1093/Bioinformatics/Btt148  0.375
2013 Grimm D, Hagmann J, Koenig D, Weigel D, Borgwardt K. Accurate indel prediction using paired-end short reads. Bmc Genomics. 14: 132. PMID 23442375 DOI: 10.1186/1471-2164-14-132  0.487
2013 Rakitsch B, Lippert C, Stegle O, Borgwardt K. A Lasso multi-marker mixed model for association mapping with population structure correction. Bioinformatics (Oxford, England). 29: 206-14. PMID 23175758 DOI: 10.1093/Bioinformatics/Bts669  0.404
2011 Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D. Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature. 480: 245-9. PMID 22057020 DOI: 10.1038/Nature10555  0.442
2011 Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics. 43: 956-63. PMID 21874002 DOI: 10.1038/Ng.911  0.488
2011 Kam-Thong T, Pütz B, Karbalai N, Müller-Myhsok B, Borgwardt K. Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs. Bioinformatics (Oxford, England). 27: i214-21. PMID 21685073 DOI: 10.1093/bioinformatics/btr218  0.322
2011 Grimm DG, Hagmann J, Koenig D, Weigel D, Borgwardt K. Support vector machines for finding deletions and short insertions using paired-end short reads F1000research. 2. DOI: 10.7490/F1000Research.2126.1  0.409
2011 Klotzbücher K, Kobayashi Y, Shervashidze N, Stegle O, Müller-Myhsok B, Weigel D, Borgwardt K. Efficient branch-and-bound techniques for two-locus association mapping Bmc Bioinformatics. 12. DOI: 10.1186/1471-2105-12-S11-A3  0.414
2010 Lippert C, Stegle O, Nickisch H, Borgwardt K, Weigel D. Experimental design for genome-wide association studies F1000research. 1. DOI: 10.7490/F1000Research.324.1  0.488
2010 Stegle O, Drewe P, Bohnert R, Borgwardt K, Rätsch G. Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts Nature Precedings. 2010: 1-11. DOI: 10.1038/Npre.2010.4437.1  0.306
2008 Pain A, Böhme U, Berry AE, Mungall K, Finn RD, Jackson AP, Mourier T, Mistry J, Pasini EM, Aslett MA, Balasubrammaniam S, Borgwardt K, Brooks K, Carret C, Carver TJ, et al. The genome of the simian and human malaria parasite Plasmodium knowlesi. Nature. 455: 799-803. PMID 18843368 DOI: 10.1038/Nature07306  0.325
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