| Year |
Citation |
Score |
| 2022 |
Cooper BJ, Moore MJ, Douglas NA, Wagner WL, Johnson MG, Overson RP, Kinosian SP, McDonnell AJ, Levin RA, Raguso RA, Flores Olvera H, Ochoterena H, Fant JB, Skogen KA, Wickett NJ. Target enrichment and extensive population sampling help untangle the recent, rapid radiation of Oenothera sect. Calylophus. Systematic Biology. PMID 35583314 DOI: 10.1093/sysbio/syac032 |
0.37 |
|
| 2022 |
Bechen LL, Johnson MG, Broadhead GT, Levin RA, Overson RP, Jogesh T, Fant JB, Raguso RA, Skogen KA, Wickett NJ. Differential gene expression associated with a floral scent polymorphism in the evening primrose Oenothera harringtonii (Onagraceae). Bmc Genomics. 23: 124. PMID 35151274 DOI: 10.1186/s12864-022-08370-6 |
0.301 |
|
| 2021 |
Baker WJ, Bailey P, Barber V, Barker A, Bellot S, Bishop D, Botigué LR, Brewer G, Carruthers T, Clarkson JJ, Cook J, Cowan RS, Dodsworth S, Epitawalage N, Françoso E, ... ... Wickett NJ, et al. A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life. Systematic Biology. PMID 33983440 DOI: 10.1093/sysbio/syab035 |
0.391 |
|
| 2020 |
Gardner EM, Johnson MG, Pereira JT, Puad ASA, Arifiani D, Wickett NJ, Zerega NJC. Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae). Systematic Biology. PMID 32970819 DOI: 10.1093/sysbio/syaa073 |
0.411 |
|
| 2020 |
Ribeiro CL, Conde D, Balmant KM, Dervinis C, Johnson MG, McGrath AP, Szewczyk P, Unda F, Finegan CA, Schmidt HW, Miles B, Drost DR, Novaes E, Gonzalez-Benecke CA, Peter GF, ... ... Wickett NJ, et al. The uncharacterized gene contributes to vessel element dimensions in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32041869 DOI: 10.1073/Pnas.1912434117 |
0.412 |
|
| 2019 |
Wong GK, Soltis DE, Leebens-Mack J, Wickett NJ, Barker MS, de Peer YV, Graham SW, Melkonian M. Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants. Annual Review of Plant Biology. PMID 31851546 DOI: 10.1146/Annurev-Arplant-042916-041040 |
0.554 |
|
| 2019 |
Carpenter EJ, Matasci N, Ayyampalayam S, Wu S, Sun J, Yu J, Jimenez Vieira FR, Bowler C, Dorrell RG, Gitzendanner MA, Li L, Du W, K Ullrich K, Wickett NJ, Barkmann TJ, et al. Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP). Gigascience. 8. PMID 31644802 DOI: 10.1093/Gigascience/Giz126 |
0.419 |
|
| 2019 |
Dodsworth S, Pokorny L, Johnson MG, Kim JT, Maurin O, Wickett NJ, Forest F, Baker WJ. Hyb-Seq for Flowering Plant Systematics. Trends in Plant Science. PMID 31477409 DOI: 10.1016/J.Tplants.2019.07.011 |
0.426 |
|
| 2019 |
Bruzzese DJ, Wagner DL, Harrison T, Jogesh T, Overson RP, Wickett NJ, Raguso RA, Skogen KA. Phylogeny, host use, and diversification in the moth family Momphidae (Lepidoptera: Gelechioidea). Plos One. 14: e0207833. PMID 31170152 DOI: 10.1371/Journal.Pone.0207833 |
0.482 |
|
| 2019 |
Liu Y, Johnson MG, Cox CJ, Medina R, Devos N, Vanderpoorten A, Hedenäs L, Bell NE, Shevock JR, Aguero B, Quandt D, Wickett NJ, Shaw AJ, Goffinet B. Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes. Nature Communications. 10: 1485. PMID 30940807 DOI: 10.1038/S41467-019-09454-W |
0.695 |
|
| 2019 |
Medina R, Johnson MG, Liu Y, Wickett NJ, Shaw AJ, Goffinet B. Phylogenomic delineation of
Physcomitrium
(Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of
Physcomitrella
,
Physcomitridium
and
Aphanorrhegma Journal of Systematics and Evolution. 57: 404-417. DOI: 10.1111/Jse.12516 |
0.638 |
|
| 2018 |
Johnson MG, Pokorny L, Dodsworth S, Botigué LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT, Leebens-Mack JH, Leitch IJ, Maurin O, Soltis DE, Soltis PS, ... ... Wickett NJ, et al. A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering. Systematic Biology. PMID 30535394 DOI: 10.1093/Sysbio/Syy086 |
0.503 |
|
| 2018 |
Villaverde T, Pokorny L, Olsson S, Rincón-Barrado M, Johnson MG, Gardner EM, Wickett NJ, Molero J, Riina R, Sanmartín I. Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above. The New Phytologist. PMID 30016546 DOI: 10.1111/Nph.15312 |
0.5 |
|
| 2018 |
Laricchia KM, Johnson MG, Ragone D, Williams EW, Zerega NJC, Wickett NJ. A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.). American Journal of Botany. PMID 29882953 DOI: 10.1002/Ajb2.1095 |
0.325 |
|
| 2018 |
Guillory WX, Onyshchenko A, Ruck EC, Parks M, Nakov T, Wickett NJ, Alverson AJ. Recurrent loss, horizontal transfer, and the obscure origins of mitochondrial introns in diatoms (Bacillariophyta). Genome Biology and Evolution. PMID 29850800 DOI: 10.1093/Gbe/Evy103 |
0.488 |
|
| 2018 |
Kates HR, Johnson MG, Gardner EM, Zerega NJC, Wickett NJ. Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus. American Journal of Botany. PMID 29729187 DOI: 10.1002/Ajb2.1068 |
0.426 |
|
| 2018 |
Parks MB, Nakov T, Ruck EC, Wickett NJ, Alverson AJ. Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. PMID 29665021 DOI: 10.1002/Ajb2.1056 |
0.496 |
|
| 2018 |
Gitzendanner MA, Yang Y, Wickett NJ, McKain M, Beaulieu JM. Methods for exploring the plant tree of life Applications in Plant Sciences. 6: e1039. DOI: 10.1002/Aps3.1039 |
0.313 |
|
| 2017 |
Medina R, Johnson M, Liu Y, Wilding N, Hedderson TA, Wickett N, Goffinet B. Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae. Molecular Phylogenetics and Evolution. PMID 29222063 DOI: 10.1016/J.Ympev.2017.12.002 |
0.681 |
|
| 2017 |
Parks MB, Wickett NJ, Alverson AJ. Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta). Molecular Biology and Evolution. PMID 29040712 DOI: 10.1093/Molbev/Msx268 |
0.514 |
|
| 2017 |
BRISCOE LRE, ZEREGA NJC, LUMBSCH HT, STECH M, KRAICHAK E, KONRAT MJV, ENGEL JJ, WICKETT NJ. Molecular, morphological, and biogeographic perspectives on the classification of Acrobolboideae (Acrobolbaceae, Marchantiophyta) Phytotaxa. 319: 56. DOI: 10.11646/Phytotaxa.319.1.2 |
0.372 |
|
| 2016 |
Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJ, Wickett NJ. HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment. Applications in Plant Sciences. 4. PMID 27437175 DOI: 10.3732/Apps.1600016 |
0.652 |
|
| 2016 |
Gardner EM, Johnson MG, Ragone D, Wickett NJ, Zerega NJ. Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery. Applications in Plant Sciences. 4. PMID 27437173 DOI: 10.3732/Apps.1600017 |
0.513 |
|
| 2016 |
Johnson MG, Malley C, Goffinet B, Jonathan Shaw A, Wickett NJ. A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta). Molecular Phylogenetics and Evolution. PMID 26811877 DOI: 10.1016/J.Ympev.2016.01.008 |
0.705 |
|
| 2016 |
Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Pires JC, Leebens-Mack JH, dePamphilis CW. Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome. Plos One. 11: e0146062. PMID 26731733 DOI: 10.1371/Journal.Pone.0146062 |
0.396 |
|
| 2015 |
Wilson AW, Wickett NJ, Grabowski P, Fant J, Borevitz J, Mueller GM. Examining the efficacy of a genotyping-by-sequencing technique for population genetic analysis of the mushroom Laccaria bicolor and evaluating whether a reference genome is necessary to assess homology. Mycologia. 107: 217-26. PMID 25361831 DOI: 10.3852/13-278 |
0.376 |
|
| 2015 |
Das M, Fernández-Aparicio M, Yang Z, Huang K, Wickett NJ, Alford S, Wafula EK, dePamphilis C, Bouwmeester H, Timko MP, Yoder JI, Westwood JH. Parasitic Plants <i>Striga</i> and <i>Phelipanche</i> Dependent upon Exogenous Strigolactones for Germination Have Retained Genes for Strigolactone Biosynthesis American Journal of Plant Sciences. 6: 1151-1166. DOI: 10.4236/Ajps.2015.68120 |
0.479 |
|
| 2014 |
Kessenich CR, Ruck EC, Schurko AM, Wickett NJ, Alverson AJ. Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms. Journal of Phycology. 50: 977-83. PMID 26988780 DOI: 10.1111/Jpy.12222 |
0.348 |
|
| 2014 |
Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17 |
0.383 |
|
| 2014 |
Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111 |
0.495 |
|
| 2014 |
Cox CJ, Goffinet B, Wickett NJ, Boles SB, Shaw AJ. Moss diversity: A molecular phylogenetic analysis of genera Phytotaxa. 9: 175. DOI: 10.11646/Phytotaxa.9.1.10 |
0.664 |
|
| 2013 |
Wicke S, Müller KF, de Pamphilis CW, Quandt D, Wickett NJ, Zhang Y, Renner SS, Schneeweiss GM. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. The Plant Cell. 25: 3711-25. PMID 24143802 DOI: 10.1105/Tpc.113.113373 |
0.575 |
|
| 2013 |
Zhang Y, Fernandez-Aparicio M, Wafula EK, Das M, Jiao Y, Wickett NJ, Honaas LA, Ralph PE, Wojciechowski MF, Timko MP, Yoder JI, Westwood JH, Depamphilis CW. Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species. Bmc Evolutionary Biology. 13: 48. PMID 23425243 DOI: 10.1186/1471-2148-13-48 |
0.411 |
|
| 2013 |
Villarreal JC, Forrest LL, Wickett N, Goffinet B. The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain. American Journal of Botany. 100: 467-77. PMID 23416362 DOI: 10.3732/Ajb.1200429 |
0.715 |
|
| 2013 |
Bliss BJ, Wanke S, Barakat A, Ayyampalayam S, Wickett N, Wall PK, Jiao Y, Landherr L, Ralph PE, Hu Y, Neinhuis C, Leebens-Mack J, Arumuganathan K, Clifton SW, Maximova SN, et al. Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies. Bmc Plant Biology. 13: 13. PMID 23347749 DOI: 10.1186/1471-2229-13-13 |
0.371 |
|
| 2013 |
Honaas LA, Wafula EK, Yang Z, Der JP, Wickett NJ, Altman NS, Taylor CG, Yoder JI, Timko MP, Westwood JH, dePamphilis CW. Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression. Bmc Plant Biology. 13: 9. PMID 23302495 DOI: 10.1186/1471-2229-13-9 |
0.362 |
|
| 2013 |
Fernández-Aparicio M, Huang K, Wafula EK, Honaas LA, Wickett NJ, Timko MP, Depamphilis CW, Yoder JI, Westwood JH. Application of qRT-PCR and RNA-Seq analysis for the identification of housekeeping genes useful for normalization of gene expression values during Striga hermonthica development Molecular Biology Reports. 40: 3395-3407. PMID 23271128 DOI: 10.1007/S11033-012-2417-Y |
0.471 |
|
| 2012 |
McKain MR, Wickett N, Zhang Y, Ayyampalayam S, McCombie WR, Chase MW, Pires JC, dePamphilis CW, Leebens-Mack J. Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). American Journal of Botany. 99: 397-406. PMID 22301890 DOI: 10.3732/Ajb.1100537 |
0.392 |
|
| 2012 |
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, et al. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13: R3. PMID 22280555 DOI: 10.1186/Gb-2012-13-1-R3 |
0.373 |
|
| 2012 |
Bandaranayake PC, Tomilov A, Tomilova NB, Ngo QA, Wickett N, dePamphilis CW, Yoder JI. The TvPirin gene is necessary for haustorium development in the parasitic plant Triphysaria versicolor. Plant Physiology. 158: 1046-53. PMID 22128136 DOI: 10.1104/Pp.111.186858 |
0.391 |
|
| 2012 |
Westwood JH, Depamphilis CW, Das M, Fernndez-Aparicio M, Honaas LA, Timko MP, Wafula EK, Wickett NJ, Yoder JI. The parasitic plant genome project: New tools for understanding the biology of Orobanche and Striga Weed Science. 60: 295-306. DOI: 10.1614/Ws-D-11-00113.1 |
0.481 |
|
| 2011 |
Wickett NJ, Honaas LA, Wafula EK, Das M, Huang K, Wu B, Landherr L, Timko MP, Yoder J, Westwood JH, dePamphilis CW. Transcriptomes of the parasitic plant family Orobanchaceae reveal surprising conservation of chlorophyll synthesis. Current Biology : Cb. 21: 2098-104. PMID 22169535 DOI: 10.1016/J.Cub.2011.11.011 |
0.513 |
|
| 2011 |
Wickett NJ, Forrest LL, Budke JM, Shaw B, Goffinet B. Frequent pseudogenization and loss of the plastid-encoded sulfate-transport gene cysA throughout the evolution of liverworts. American Journal of Botany. 98: 1263-75. PMID 21821590 DOI: 10.3732/Ajb.1100010 |
0.739 |
|
| 2011 |
Hsu CY, Adams JP, Kim H, No K, Ma C, Strauss SH, Drnevich J, Vandervelde L, Ellis JD, Rice BM, Wickett N, Gunter LE, Tuskan GA, Brunner AM, Page GP, et al. FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proceedings of the National Academy of Sciences of the United States of America. 108: 10756-61. PMID 21653885 DOI: 10.1073/Pnas.1104713108 |
0.374 |
|
| 2011 |
Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, Soltis DE, Clifton SW, Schlarbaum SE, Schuster SC, Ma H, et al. Ancestral polyploidy in seed plants and angiosperms. Nature. 473: 97-100. PMID 21478875 DOI: 10.1038/Nature09916 |
0.586 |
|
| 2011 |
Der JP, Barker MS, Wickett NJ, dePamphilis CW, Wolf PG. De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum. Bmc Genomics. 12: 99. PMID 21303537 DOI: 10.1186/1471-2164-12-99 |
0.592 |
|
| 2011 |
Forrest LL, Wickett NJ, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure Plant Ecology and Evolution. 144: 29-43. DOI: 10.5091/Plecevo.2011.535 |
0.657 |
|
| 2011 |
Liang H, Ayyampalayam S, Wickett N, Barakat A, Xu Y, Landherr L, Ralph PE, Jiao Y, Xu T, Schlarbaum SE, Ma H, Leebens-Mack JH, dePamphilis CW. Generation of a large-scale genomic resource for functional and comparative genomics in Liriodendron tulipifera L Tree Genetics and Genomes. 7: 941-954. DOI: 10.1007/S11295-011-0386-2 |
0.547 |
|
| 2010 |
Preußing M, Olsson S, Schäfer-Verwimp A, Wickett NJ, Wicke S, Quandt D, Nebel M. New insights in the evolution of the liverwort family Aneuraceae (Metzgeriales, Marchantiophyta), with emphasis on the genus Lobatiriccardia Taxon. 59: 1424-1440. DOI: 10.1002/Tax.595009 |
0.405 |
|
| 2008 |
Wickett NJ, Fan Y, Lewis PO, Goffinet B. Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida). Journal of Molecular Evolution. 67: 111-22. PMID 18594897 DOI: 10.1007/S00239-008-9133-1 |
0.679 |
|
| 2008 |
Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, DePamphilis CW, Boore JL, Goffinet B. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Molecular Biology and Evolution. 25: 393-401. PMID 18056074 DOI: 10.1093/Molbev/Msm267 |
0.723 |
|
| 2008 |
WICKETT NJ, GOFFINET B. Origin and relationships of the myco-heterotrophic liverwort Cryptothallus mirabilis Malmb. (Metzgeriales, Marchantiophyta) Botanical Journal of the Linnean Society. 156: 1-12. DOI: 10.1111/J.1095-8339.2007.00743.X |
0.633 |
|
| 2007 |
Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta). Annals of Botany. 99: 747-53. PMID 17337480 DOI: 10.1093/Aob/Mcm010 |
0.679 |
|
| 2005 |
Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the
rpoA
loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363 |
0.62 |
|
| 2005 |
Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363 |
0.713 |
|
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