| Year |
Citation |
Score |
| 2014 |
Horn H, Schoof EM, Kim J, Robin X, Miller ML, Diella F, Palma A, Cesareni G, Jensen LJ, Linding R. KinomeXplorer: an integrated platform for kinome biology studies. Nature Methods. 11: 603-4. PMID 24874572 DOI: 10.1038/nmeth.2968 |
0.32 |
|
| 2014 |
Pasculescu A, Schoof EM, Creixell P, Zheng Y, Olhovsky M, Tian R, So J, Vanderlaan RD, Pawson T, Linding R, Colwill K. CoreFlow: a computational platform for integration, analysis and modeling of complex biological data. Journal of Proteomics. 100: 167-73. PMID 24503186 DOI: 10.1016/j.jprot.2014.01.023 |
1 |
|
| 2013 |
Robin X, Creixell P, Radetskaya O, Santini CC, Longden J, Linding R. Personalized network-based treatments in oncology. Clinical Pharmacology and Therapeutics. 94: 646-50. PMID 23995267 DOI: 10.1038/clpt.2013.171 |
1 |
|
| 2013 |
Martin SF, Falkenberg H, Dyrlund TF, Khoudoli GA, Mageean CJ, Linding R. PROTEINCHALLENGE: crowd sourcing in proteomics analysis and software development. Journal of Proteomics. 88: 41-6. PMID 23220569 DOI: 10.1016/j.jprot.2012.11.014 |
1 |
|
| 2012 |
Creixell P, Schoof EM, Erler JT, Linding R. Navigating cancer network attractors for tumor-specific therapy. Nature Biotechnology. 30: 842-8. PMID 22965061 DOI: 10.1038/nbt.2345 |
1 |
|
| 2012 |
Creixell P, Schoof EM, Tan CS, Linding R. Mutational properties of amino acid residues: implications for evolvability of phosphorylatable residues. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 2584-93. PMID 22889909 DOI: 10.1098/rstb.2012.0076 |
1 |
|
| 2012 |
Creixell P, Linding R. Cells, shared memory and breaking the PTM code. Molecular Systems Biology. 8: 598. PMID 22866336 DOI: 10.1038/msb.2012.33 |
1 |
|
| 2012 |
Erler JT, Linding R. Network medicine strikes a blow against breast cancer. Cell. 149: 731-3. PMID 22579276 DOI: 10.1016/j.cell.2012.04.014 |
1 |
|
| 2011 |
Meyer P, Alexopoulos LG, Bonk T, Califano A, Cho CR, de la Fuente A, de Graaf D, Hartemink AJ, Hoeng J, Ivanov NV, Koeppl H, Linding R, Marbach D, Norel R, Peitsch MC, et al. Verification of systems biology research in the age of collaborative competition. Nature Biotechnology. 29: 811-5. PMID 21904331 DOI: 10.1038/nbt.1968 |
1 |
|
| 2011 |
Olhovsky M, Williton K, Dai AY, Pasculescu A, Lee JP, Goudreault M, Wells CD, Park JG, Gingras AC, Linding R, Pawson T, Colwill K. OpenFreezer: a reagent information management software system. Nature Methods. 8: 612-3. PMID 21799493 DOI: 10.1038/nmeth.1658 |
1 |
|
| 2011 |
Tan CSH, Schoof EM, Creixell P, Pasculescu A, Lim WA, Pawson T, Bader GD, Linding R. Response to comment on "positive selection of tyrosine loss in metazoan evolution" Science. 332: 917-b. DOI: 10.1126/science.1188535 |
1 |
|
| 2010 |
Reinhardt HC, Hasskamp P, Schmedding I, Morandell S, van Vugt MA, Wang X, Linding R, Ong SE, Weaver D, Carr SA, Yaffe MB. DNA damage activates a spatially distinct late cytoplasmic cell-cycle checkpoint network controlled by MK2-mediated RNA stabilization. Molecular Cell. 40: 34-49. PMID 20932473 DOI: 10.1016/j.molcel.2010.09.018 |
1 |
|
| 2010 |
Linding R. (R)evolution of complex regulatory systems. Science Signaling. 3: eg4. PMID 20571125 DOI: 10.1126/scisignal.3127eg4 |
1 |
|
| 2010 |
Linding R. Multivariate signal integration. Nature Reviews. Molecular Cell Biology. 11: 391. PMID 20445545 DOI: 10.1038/nrm2906 |
1 |
|
| 2010 |
Tan CS, Jørgensen C, Linding R. Roles of “junk phosphorylation” in modulating biomolecular association of phosphorylated proteins? Cell Cycle (Georgetown, Tex.). 9: 1276-80. PMID 20234177 |
1 |
|
| 2010 |
van Vugt MA, Gardino AK, Linding R, Ostheimer GJ, Reinhardt HC, Ong SE, Tan CS, Miao H, Keezer SM, Li J, Pawson T, Lewis TA, Carr SA, Smerdon SJ, Brummelkamp TR, et al. A mitotic phosphorylation feedback network connects Cdk1, Plk1, 53BP1, and Chk2 to inactivate the G(2)/M DNA damage checkpoint. Plos Biology. 8: e1000287. PMID 20126263 DOI: 10.1371/journal.pbio.1000287 |
1 |
|
| 2010 |
Jørgensen C, Linding R. Simplistic pathways or complex networks? Current Opinion in Genetics & Development. 20: 15-22. PMID 20096559 DOI: 10.1016/j.gde.2009.12.003 |
1 |
|
| 2010 |
Erler JT, Linding R. Network-based drugs and biomarkers. The Journal of Pathology. 220: 290-6. PMID 19921715 DOI: 10.1002/path.2646 |
1 |
|
| 2010 |
Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, ... ... Linding R, et al. ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research. 38: D167-80. PMID 19920119 DOI: 10.1093/nar/gkp1016 |
1 |
|
| 2009 |
Jørgensen C, Sherman A, Chen GI, Pasculescu A, Poliakov A, Hsiung M, Larsen B, Wilkinson DG, Linding R, Pawson T. Cell-specific information processing in segregating populations of Eph receptor ephrin-expressing cells. Science (New York, N.Y.). 326: 1502-9. PMID 20007894 DOI: 10.1126/science.1176615 |
1 |
|
| 2009 |
Jin J, Xie X, Chen C, Park JG, Stark C, James DA, Olhovsky M, Linding R, Mao Y, Pawson T. Eukaryotic protein domains as functional units of cellular evolution. Science Signaling. 2: ra76. PMID 19934434 DOI: 10.1126/scisignal.2000546 |
1 |
|
| 2009 |
Tan CS, Linding R. Experimental and computational tools useful for (re)construction of dynamic kinase-substrate networks. Proteomics. 9: 5233-42. PMID 19834900 DOI: 10.1002/pmic.200900266 |
1 |
|
| 2009 |
Van Hoof D, Muñoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell. 5: 214-26. PMID 19664995 DOI: 10.1016/j.stem.2009.05.021 |
1 |
|
| 2009 |
Tan CS, Bodenmiller B, Pasculescu A, Jovanovic M, Hengartner MO, Jørgensen C, Bader GD, Aebersold R, Pawson T, Linding R. Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases. Science Signaling. 2: ra39. PMID 19638616 DOI: 10.1126/scisignal.2000316 |
1 |
|
| 2009 |
Tan CS, Pasculescu A, Lim WA, Pawson T, Bader GD, Linding R. Positive selection of tyrosine loss in metazoan evolution. Science (New York, N.Y.). 325: 1686-8. PMID 19589966 DOI: 10.1126/science.1174301 |
1 |
|
| 2009 |
Wang K, Alvarez MJ, Bisikirska BC, Linding R, Basso K, Dalla Favera R, Califano A. Dissecting the interface between signaling and transcriptional regulation in human B cells. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 264-75. PMID 19209707 |
1 |
|
| 2009 |
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL. Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nature Biotechnology. 27: 199-204. PMID 19182785 DOI: 10.1038/nbt.1522 |
1 |
|
| 2008 |
Bakal C, Linding R, Llense F, Heffern E, Martin-Blanco E, Pawson T, Perrimon N. Phosphorylation networks regulating JNK activity in diverse genetic backgrounds. Science (New York, N.Y.). 322: 453-6. PMID 18927396 DOI: 10.1126/science.1158739 |
1 |
|
| 2008 |
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, ... ... Linding R, et al. Linear motif atlas for phosphorylation-dependent signaling. Science Signaling. 1: ra2. PMID 18765831 DOI: 10.1126/scisignal.1159433 |
1 |
|
| 2008 |
Pawson T, Linding R. Network medicine. Febs Letters. 582: 1266-70. PMID 18282479 DOI: 10.1016/j.febslet.2008.02.011 |
1 |
|
| 2008 |
Jørgensen C, Linding R. Directional and quantitative phosphorylation networks. Briefings in Functional Genomics & Proteomics. 7: 17-26. PMID 18270216 DOI: 10.1093/bfgp/eln001 |
1 |
|
| 2008 |
Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, Pawson T. NetworKIN: a resource for exploring cellular phosphorylation networks. Nucleic Acids Research. 36: D695-9. PMID 17981841 DOI: 10.1093/nar/gkm902 |
1 |
|
| 2008 |
Linding R, VanHook AM. Science signaling podcast: 28 October 2008 Science Signaling. 1. DOI: 10.1126/scisignal.143pc10 |
1 |
|
| 2007 |
Linding R, Jensen LJ, Ostheimer GJ, van Vugt MA, Jørgensen C, Miron IM, Diella F, Colwill K, Taylor L, Elder K, Metalnikov P, Nguyen V, Pasculescu A, Jin J, Park JG, et al. Systematic discovery of in vivo phosphorylation networks. Cell. 129: 1415-26. PMID 17570479 DOI: 10.1016/j.cell.2007.05.052 |
1 |
|
| 2005 |
Neduva V, Linding R, Su-Angrand I, Stark A, de Masi F, Gibson TJ, Lewis J, Serrano L, Russell RB. Systematic discovery of new recognition peptides mediating protein interaction networks. Plos Biology. 3: e405. PMID 16279839 DOI: 10.1371/journal.pbio.0030405 |
1 |
|
| 2005 |
Ingham RJ, Colwill K, Howard C, Dettwiler S, Lim CS, Yu J, Hersi K, Raaijmakers J, Gish G, Mbamalu G, Taylor L, Yeung B, Vassilovski G, Amin M, Chen F, ... ... Linding R, et al. WW domains provide a platform for the assembly of multiprotein networks. Molecular and Cellular Biology. 25: 7092-106. PMID 16055720 DOI: 10.1128/MCB.25.16.7092-7106.2005 |
1 |
|
| 2005 |
Pawson T, Linding R. Synthetic modular systems--reverse engineering of signal transduction. Febs Letters. 579: 1808-14. PMID 15763556 DOI: 10.1016/j.febslet.2005.02.013 |
1 |
|
| 2004 |
Linding R, Schymkowitz J, Rousseau F, Diella F, Serrano L. A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins. Journal of Molecular Biology. 342: 345-53. PMID 15313629 DOI: 10.1016/j.jmb.2004.06.088 |
1 |
|
| 2004 |
Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ. Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. Bmc Bioinformatics. 5: 79. PMID 15212693 DOI: 10.1186/1471-2105-5-79 |
1 |
|
| 2003 |
Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. Protein disorder prediction: implications for structural proteomics. Structure (London, England : 1993). 11: 1453-9. PMID 14604535 DOI: 10.1016/j.str.2003.10.002 |
1 |
|
| 2003 |
Bimpikis K, Budd A, Linding R, Gibson TJ. BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases. Nucleic Acids Research. 31: 3792-4. PMID 12824420 DOI: 10.1093/nar/gkg535 |
1 |
|
| 2003 |
Linding R, Russell RB, Neduva V, Gibson TJ. GlobPlot: Exploring protein sequences for globularity and disorder. Nucleic Acids Research. 31: 3701-8. PMID 12824398 DOI: 10.1093/nar/gkg519 |
1 |
|
| 2003 |
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, et al. ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research. 31: 3625-30. PMID 12824381 DOI: 10.1093/nar/gkg545 |
1 |
|
| 2002 |
Aasland R, Abrams C, Ampe C, Ball LJ, Bedford MT, Cesareni G, Gimona M, Hurley JH, Jarchau T, Lehto VP, Lemmon MA, Linding R, Mayer BJ, Nagai M, Sudol M, et al. Normalization of nomenclature for peptide motifs as ligands of modular protein domains. Febs Letters. 513: 141-4. PMID 11911894 DOI: 10.1016/S0014-5793(01)03295-1 |
1 |
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