Peter Donnelly - Publications

Affiliations: 
Exercise Sciences University of Toronto, Toronto, ON, Canada 
Area:
Physical Education, Asian Studies, Gender Studies, Ethnic and Racial Studies

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bycroft C, Fernandez-Rozadilla C, Ruiz-Ponte C, Quintela I, Carracedo Á, Donnelly P, Myers S. Patterns of genetic differentiation and the footprints of historical migrations in the Iberian Peninsula. Nature Communications. 10: 551. PMID 30710075 DOI: 10.1038/S41467-018-08272-W  0.316
2018 Young AI, Wauthier FL, Donnelly P. Identifying loci affecting trait variability and detecting interactions in genome-wide association studies. Nature Genetics. PMID 30323177 DOI: 10.1038/S41588-018-0225-6  0.303
2018 Bycroft C, Freeman C, Petkova D, Band G, Elliott LT, Sharp K, Motyer A, Vukcevic D, Delaneau O, O'Connell J, Cortes A, Welsh S, Young A, Effingham M, McVean G, ... Donnelly P, et al. The UK Biobank resource with deep phenotyping and genomic data. Nature. 562: 203-209. PMID 30305743 DOI: 10.1038/S41586-018-0579-Z  0.343
2018 Martin HC, Batty EM, Hussin J, Westall P, Daish T, Kolomyjec S, Piazza P, Bowden R, Hawkins M, Grant T, Moritz C, Grutzner F, Gongora J, Donnelly P. Insights into Platypus Population Structure and History from Whole-Genome Sequencing. Molecular Biology and Evolution. 35: 1238-1252. PMID 29688544 DOI: 10.1093/Molbev/Msy041  0.329
2017 Jason F, Fuchsberger C, Mahajan A, Teslovich TM, Agarwala V, Gaulton KJ, Caulkins L, Koesterer R, Ma C, Moutsianas L, McCarthy DJ, Rivas MA, Perry JRB, Sim X, Blackwell TW, ... Donnelly P, et al. Sequence data and association statistics from 12,940 type 2 diabetes cases and controls. Scientific Data. 4: 170179. PMID 29257133 DOI: 10.1038/Sdata.2017.179  0.307
2017 Cortes A, Dendrou CA, Motyer A, Jostins L, Vukcevic D, Dilthey A, Donnelly P, Leslie S, Fugger L, McVean G. Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank. Nature Genetics. PMID 28759005 DOI: 10.1038/Ng.3926  0.319
2016 Fuchsberger C, Flannick J, Teslovich TM, Mahajan A, Agarwala V, Gaulton KJ, Ma C, Fontanillas P, Moutsianas L, McCarthy DJ, Rivas MA, Perry JR, Sim X, Blackwell TW, Robertson NR, ... Donnelly P, et al. The genetic architecture of type 2 diabetes. Nature. PMID 27398621 DOI: 10.1038/Nature18642  0.305
2016 Rautanen A, Pirinen M, Mills TC, Rockett KA, Strange A, Ndungu AW, Naranbhai V, Gilchrist JJ, Bellenguez C, Freeman C, Band G, Bumpstead SJ, Edkins S, ... Donnelly P, et al. Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children. American Journal of Human Genetics. PMID 27236921 DOI: 10.1016/J.Ajhg.2016.03.025  0.31
2015 Price AL, Spencer CC, Donnelly P. Progress and promise in understanding the genetic basis of common diseases. Proceedings. Biological Sciences / the Royal Society. 282: 20151684. PMID 26702037 DOI: 10.1098/Rspb.2015.1684  0.338
2015 Rivas MA, Pirinen M, Conrad DF, Lek M, Tsang EK, Karczewski KJ, Maller JB, Kukurba KR, DeLuca DS, Fromer M, Ferreira PG, Smith KS, Zhang R, Zhao F, Banks E, ... Donnelly P, et al. Human genomics. Effect of predicted protein-truncating genetic variants on the human transcriptome. Science (New York, N.Y.). 348: 666-9. PMID 25954003 DOI: 10.1126/Science.1261877  0.305
2015 Leslie S, Winney B, Hellenthal G, Davison D, Boumertit A, Day T, Hutnik K, Royrvik EC, Cunliffe B, Lawson DJ, Falush D, Freeman C, Pirinen M, ... Donnelly P, et al. The fine-scale genetic structure of the British population. Nature. 519: 309-14. PMID 25788095 DOI: 10.1038/Nature14230  0.334
2014 Hinch AG, Altemose N, Noor N, Donnelly P, Myers SR. Recombination in the human Pseudoautosomal region PAR1. Plos Genetics. 10: e1004503. PMID 25033397 DOI: 10.1371/Journal.Pgen.1004503  0.308
2013 Lappalainen T, Sammeth M, Friedländer MR, 't Hoen PA, Monlong J, Rivas MA, Gonzàlez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlöf J, ... Donnelly P, et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature. 501: 506-11. PMID 24037378 DOI: 10.1038/Nature12531  0.317
2013 Rivas MA, Pirinen M, Neville MJ, Gaulton KJ, Moutsianas L, Lindgren CM, Karpe F, McCarthy MI, Donnelly P. Assessing association between protein truncating variants and quantitative traits. Bioinformatics (Oxford, England). 29: 2419-26. PMID 23860716 DOI: 10.1093/Bioinformatics/Btt409  0.313
2013 Cortes A, Hadler J, Pointon JP, Robinson PC, Karaderi T, Leo P, Cremin K, Pryce K, Harris J, Lee S, Joo KB, Shim SC, Weisman M, Ward M, ... Donnelly P, et al. Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci. Nature Genetics. 45: 730-8. PMID 23749187 DOI: 10.1038/Ng.2667  0.307
2013 Leffler EM, Gao Z, Pfeifer S, Ségurel L, Auton A, Venn O, Bowden R, Bontrop R, Wall JD, Sella G, Donnelly P, McVean G, Przeworski M. Multiple instances of ancient balancing selection shared between humans and chimpanzees. Science (New York, N.Y.). 339: 1578-82. PMID 23413192 DOI: 10.1126/Science.1234070  0.317
2013 Pirinen M, Donnelly P, Spencer CCA. Efficient computation with a linear mixed model on large-scale data sets with applications to genetic studies Annals of Applied Statistics. 7: 369-390. DOI: 10.1214/12-Aoas586  0.309
2012 Pirinen M, Donnelly P, Spencer CC. Including known covariates can reduce power to detect genetic effects in case-control studies. Nature Genetics. 44: 848-51. PMID 22820511 DOI: 10.1038/Ng.2346  0.309
2012 Bowden R, MacFie TS, Myers S, Hellenthal G, Nerrienet E, Bontrop RE, Freeman C, Donnelly P, Mundy NI. Genomic tools for evolution and conservation in the chimpanzee: Pan troglodytes ellioti is a genetically distinct population. Plos Genetics. 8: e1002504. PMID 22396655 DOI: 10.1371/Journal.Pgen.1002504  0.35
2012 Bhopal R, Smith C, Smith J, Craig P, Sans S, Littlejohn C, Donnelly P, Gruer L, Crombie I, Dunbar JK. World Congress of Epidemiology 2011: Themes and highlights Public Health. 126: 179-184. PMID 22317946 DOI: 10.1016/J.Puhe.2011.12.014  0.312
2012 Bellenguez C, Strange A, Freeman C, Donnelly P, Spencer CC. A robust clustering algorithm for identifying problematic samples in genome-wide association studies. Bioinformatics (Oxford, England). 28: 134-5. PMID 22057162 DOI: 10.1093/Bioinformatics/Btr599  0.321
2012 Winney B, Boumertit A, Day T, Davison D, Echeta C, Evseeva I, Hutnik K, Leslie S, Nicodemus K, Royrvik EC, Tonks S, Yang X, Cheshire J, Longley P, Mateos P, ... Donnelly P, et al. People of the British Isles: preliminary analysis of genotypes and surnames in a UK-control population. European Journal of Human Genetics : Ejhg. 20: 203-10. PMID 21829225 DOI: 10.1038/Ejhg.2011.127  0.317
2011 Nicholson G, Rantalainen M, Li JV, Maher AD, Malmodin D, Ahmadi KR, Faber JH, Barrett A, Min JL, Rayner NW, Toft H, Krestyaninova M, Viksna J, Neogi SG, Dumas ME, ... Donnelly P, et al. A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection. Plos Genetics. 7: e1002270. PMID 21931564 DOI: 10.1371/Journal.Pgen.1002270  0.325
2011 Sawcer S, Hellenthal G, Pirinen M, Spencer CC, Patsopoulos NA, Moutsianas L, Dilthey A, Su Z, Freeman C, Hunt SE, Edkins S, Gray E, Booth DR, ... Donnelly P, et al. Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. Nature. 476: 214-9. PMID 21833088 DOI: 10.1038/Nature10251  0.335
2011 Didelot X, Bowden R, Street T, Golubchik T, Spencer C, McVean G, Sangal V, Anjum MF, Achtman M, Falush D, Donnelly P. Recombination and population structure in Salmonella enterica. Plos Genetics. 7: e1002191. PMID 21829375 DOI: 10.1371/Journal.Pgen.1002191  0.313
2011 Cardin N, Holmes C, Donnelly P, Marchini J. Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array. Genetic Epidemiology. 35: 536-48. PMID 21769931 DOI: 10.1002/Gepi.20604  0.307
2011 Spencer C, Hechter E, Vukcevic D, Donnelly P. Quantifying the underestimation of relative risks from genome-wide association studies. Plos Genetics. 7. PMID 21437273 DOI: 10.1371/Journal.Pgen.1001337  0.319
2011 Peden JF, Hopewell JC, Saleheen D, Chambers JC, Hager J, Soranzo N, Collins R, Danesh J, Elliott P, Farrall M, Stirrups K, Zhang W, Hamsten A, Parish S, Lathrop M, ... Donnelly P, et al. A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease Nature Genetics. 43: 339-346. PMID 21378988 DOI: 10.1038/Ng.782  0.311
2011 Donnelly P. Making Sense of the Data Science. 331: 1024-1025. PMID 21350160 DOI: 10.1126/Science.1204089  0.328
2010 Strange A, Capon F, Spencer CC, Knight J, Weale ME, Allen MH, Barton A, Band G, Bellenguez C, Bergboer JG, Blackwell JM, Bramon E, Bumpstead SJ, Casas JP, ... Donnelly P, et al. A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1. Nature Genetics. 42: 985-90. PMID 20953190 DOI: 10.1038/Ng.694  0.308
2010 Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, ... Donnelly P, et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature. 464: 713-20. PMID 20360734 DOI: 10.1038/Nature08979  0.332
2009 Howie BN, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. Plos Genetics. 5: e1000529. PMID 19543373 DOI: 10.1371/Journal.Pgen.1000529  0.317
2009 Spencer CCA, Su Z, Donnelly P, Marchini J. Designing genome-wide association studies: Sample size, power, imputation, and the choice of genotyping chip Plos Genetics. 5. PMID 19492015 DOI: 10.1371/Journal.Pgen.1000477  0.319
2009 Jallow M, Teo YY, Small KS, Rockett KA, Deloukas P, Clark TG, Kivinen K, Bojang KA, Conway DJ, Pinder M, Sirugo G, Sisay-Joof F, Usen S, Auburn S, Bumpstead SJ, ... Donnelly P, et al. Genome-wide and fine-resolution association analysis of malaria in West Africa. Nature Genetics. 41: 657-65. PMID 19465909 DOI: 10.1038/Ng.388  0.324
2009 Myers S, Freeman C, Auton A, Donnelly P, McVean G. A common sequence motif associated with recombination hot spots and genome instability in humans. Nature Genetics. 40: 1124-9. PMID 19165926 DOI: 10.1038/Ng.213  0.302
2009 Su Z, Cardin N, Donnelly P, Marchini J. A Bayesian Method for Detecting and Characterizing Allelic Heterogeneity and Boosting Signals in Genome-Wide Association Studies Statistical Science. 24: 430-450. DOI: 10.1214/09-Sts311  0.311
2008 Donnelly P. Progress and Challenges in Genome-Wide Association Studies in Humans Nature. 456: 728-731. PMID 19079049 DOI: 10.1038/Nature07631  0.321
2008 Chaix R, Cao C, Donnelly P. Is Mate Choice in Humans MHC-Dependent? Plos Genetics. 4. PMID 18787687 DOI: 10.1371/Journal.Pgen.1000184  0.305
2007 Burton PR, Clayton DG, Cardon LR, Craddock N, Deloukas P, Duncanson A, Kwiatkowski DP, McCarthy MI, Ouwehand WH, Samani NJ, Todd JA, Donnelly P, Barrett JC, et al. Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nature Genetics. 39: 1329-37. PMID 17952073 DOI: 10.1038/Ng.2007.17  0.302
2007 Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, Frazer KA, Ballinger DG, ... ... Donnelly P, et al. Genome-wide detection and characterization of positive selection in human populations. Nature. 449: 913-8. PMID 17943131 DOI: 10.1038/Nature06250  0.33
2007 Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, ... ... Donnelly P, et al. A second generation human haplotype map of over 3.1 million SNPs. Nature. 449: 851-61. PMID 17943122 DOI: 10.1038/Nature06258  0.335
2007 Manolio TA, Rodriguez LL, Brooks L, Abecasis G, Ballinger D, Daly M, Donnelly P, Faraone SV, Frazer K, Gabriel S, Gejman P, et al. New models of collaboration in genome-wide association studies: the Genetic Association Information Network. Nature Genetics. 39: 1045-51. PMID 17728769 DOI: 10.1038/Ng2127  0.316
2007 Marchini J, Howie B, Myers S, McVean G, Donnelly P. A new multipoint method for genome-wide association studies by imputation of genotypes. Nature Genetics. 39: 906-13. PMID 17572673 DOI: 10.1038/Ng2088  0.323
2007 Burton PR, Clayton DG, Cardon LR, Craddock N, Deloukas P, Duncanson A, Kwiatkowski DP, McCarthy MI, Ouwehand WH, Samani NJ, Todd JA, Donnelly P, Barrett JC, Davison D, Easton D, et al. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls Nature. 447: 661-678. PMID 17554300 DOI: 10.1038/Nature05911  0.351
2007 Eyheramendy S, Marchini J, McVean G, Myers S, Donnelly P. A model-based approach to capture genetic variation for future association studies. Genome Research. 17: 88-95. PMID 17095708 DOI: 10.1101/Gr.5675406  0.332
2006 Spencer CC, Deloukas P, Hunt S, Mullikin J, Myers S, Silverman B, Donnelly P, Bentley D, McVean G. The influence of recombination on human genetic diversity. Plos Genetics. 2: e148. PMID 17044736 DOI: 10.1371/Journal.Pgen.0020148  0.308
2006 Myers S, Spencer CCA, Auton A, Bottolo L, Freeman C, Donnelly P, McVean G. The distribution and causes of meiotic recombination in the human genome Biochemical Society Transactions. 34: 526-530. PMID 16856851 DOI: 10.1042/Bst0340526  0.314
2006 Bowden R, Sakaoka H, Ward R, Donnelly P. Patterns of Eurasian HSV-1 molecular diversity and inferences of human migrations. Infection, Genetics and Evolution. 6: 63-74. PMID 16376841 DOI: 10.1016/J.Meegid.2005.01.004  0.301
2005 Myers S, Bottolo L, Freeman C, McVean G, Donnelly P. A fine-scale map of recombination rates and hotspots across the human genome. Science (New York, N.Y.). 310: 321-4. PMID 16224025 DOI: 10.1126/Science.1117196  0.305
2005 Jeffreys AJ, Neumann R, Panayi M, Myers S, Donnelly P. Human recombination hot spots hidden in regions of strong marker association. Nature Genetics. 37: 601-6. PMID 15880103 DOI: 10.1038/Ng1565  0.307
2005 Marchini J, Donnelly P, Cardon LR. Genome-wide strategies for detecting multiple loci that influence complex diseases. Nature Genetics. 37: 413-7. PMID 15793588 DOI: 10.1038/Ng1537  0.333
2004 Fearnhead P, Harding RM, Schneider JA, Myers S, Donnelly P. Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots. Genetics. 167: 2067-81. PMID 15342541 DOI: 10.1534/Genetics.103.021584  0.316
2004 McVean GA, Myers SR, Hunt S, Deloukas P, Bentley DR, Donnelly P. The fine-scale structure of recombination rate variation in the human genome. Science (New York, N.Y.). 304: 581-4. PMID 15105499 DOI: 10.1126/Science.1092500  0.323
2004 Marchini J, Cardon LR, Phillips MS, Donnelly P. The effects of human population structure on large genetic association studies Nature Genetics. 36: 512-517. PMID 15052271 DOI: 10.1038/Ng1337  0.33
2003 Helgason A, Nicholson G, Stefánsson K, Donnelly P. A reassessment of genetic diversity in Icelanders: strong evidence from multiple loci for relative homogeneity caused by genetic drift. Annals of Human Genetics. 67: 281-297. PMID 12914564 DOI: 10.1046/J.1469-1809.2003.00046.X  0.34
2003 Stephens M, Donnelly P. Ancestral Inference in Population Genetics Models with Selection (with Discussion) Australian & New Zealand Journal of Statistics. 45: 395-430. DOI: 10.1111/1467-842X.00295  0.315
2003 Belmont JW, Hardenbol P, Willis TD, Yu F, Yang H, Ch'Ang LY, Huang W, Liu B, Shen Y, Tam PKH, Tsui LC, Waye MMY, Wong JTF, Zeng C, Zhang Q, ... Donnelly P, et al. The international HapMap project Nature. 426: 789-796. DOI: 10.1038/Nature02168  0.313
2002 Nicholson G, Smith AV, Jonsson F, Gustafsson O, Stefansson K, Donnelly P. Assessing population differentiation and isolation from single-nucleotide polymorphism data Journal of the Royal Statistical Society: Series B (Statistical Methodology). 64: 695-715. DOI: 10.1111/1467-9868.00357  0.311
2002 Fearnhead P, Donnelly P. Approximate likelihood methods for estimating local recombination rates Journal of the Royal Statistical Society Series B-Statistical Methodology. 64: 657-680. DOI: 10.1111/1467-9868.00355  0.328
2001 Pritchard JK, Donnelly P. Case-control studies of association in structured or admixed populations. Theoretical Population Biology. 60: 227-37. PMID 11855957 DOI: 10.1006/Tpbi.2001.1543  0.315
2000 Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. Association mapping in structured populations. American Journal of Human Genetics. 67: 170-81. PMID 10827107 DOI: 10.1086/302959  0.332
1996 Donnelly P, Tavaré S. Coalescents and genealogical structure under neutrality. Annual Review of Genetics. 29: 401-21. PMID 8825481 DOI: 10.1146/Annurev.Ge.29.120195.002153  0.322
1995 Balding DJ, Donnelly P. Inferring identify from DNA profile evidence Proceedings of the National Academy of Sciences of the United States of America. 92: 11741-11745. PMID 8524840 DOI: 10.1073/Pnas.92.25.11741  0.304
1995 Donnelly P. Nonindependence of matches at different loci in DNA profiles: quantifying the effect of close relatives on the match probability. Heredity. 75: 26-34. PMID 7649755 DOI: 10.1038/Hdy.1995.100  0.312
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