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Sriganesh Srihari, PhD - Publications

Affiliations: 
Computer Science National University of Singapore, Singapore, Singapore 
Area:
Computational Biology, Bioinformatics
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kennedy SA, Jarboui MA, Srihari S, Raso C, Bryan K, Dernayka L, Charitou T, Bernal-Llinares M, Herrera-Montavez C, Krstic A, Matallanas D, Kotlyar M, Jurisica I, Curak J, Wong V, et al. Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS. Nature Communications. 11: 499. PMID 31980649 DOI: 10.1038/S41467-019-14224-9  0.321
2019 Nones K, Johnson J, Newell F, Patch AM, Thorne H, Kazakoff SH, de Luca XM, Parsons MT, Ferguson K, Reid L, Reed AEM, Srihari S, Lakis V, Davidson AL, Mukhopadhyay P, et al. Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers. Annals of Oncology : Official Journal of the European Society For Medical Oncology. PMID 31090900 DOI: 10.1093/Annonc/Mdz132  0.571
2019 Duijf PHG, Nanayakkara D, Nones K, Srihari S, Kalimutho M, Khanna KK. Mechanisms of Genomic Instability in Breast Cancer. Trends in Molecular Medicine. PMID 31078431 DOI: 10.1016/J.Molmed.2019.04.004  0.385
2019 Kalimutho M, Sinha D, Mittal D, Srihari S, Nanayakkara D, Shafique S, Raninga P, Nag P, Parsons K, Khanna KK. Blockade of PDGFRβ circumvents resistance to MEK-JAK inhibition via intratumoral CD8 T-cells infiltration in triple-negative breast cancer. Journal of Experimental & Clinical Cancer Research : Cr. 38: 85. PMID 30777101 DOI: 10.1186/S13046-019-1075-5  0.301
2019 Kalimutho M, Nones K, Srihari S, Duijf PHG, Waddell N, Khanna KK. Patterns of Genomic Instability in Breast Cancer. Trends in Pharmacological Sciences. PMID 30736983 DOI: 10.1016/J.Tips.2019.01.005  0.395
2019 Simpson P, Nones K, Johnson J, Newell F, Patch A, Thorne H, Kazakoff S, Luca XD, Parsons M, Ferguson K, Reid L, Reed AM, Srihari S, Lakis V, Davidson A, et al. Abstract P5-10-01: Using whole genome sequencing and somatic mutation signatures to unravel insight into familial breast cancer aetiology Cancer Research. 79. DOI: 10.1158/1538-7445.Sabcs18-P5-10-01  0.56
2018 Ivazeh A, Zahiri J, Rahgozar M, Srihari S. Performance evaluation measures for protein complex prediction. Genomics. PMID 30312661 DOI: 10.1016/J.Ygeno.2018.10.003  0.41
2018 Kalimutho M, Sinha D, Jeffery J, Nones K, Srihari S, Fernando WC, Duijf PH, Vennin C, Raninga P, Nanayakkara D, Mittal D, Saunus JM, Lakhani SR, López JA, Spring KJ, et al. CEP55 is a determinant of cell fate during perturbed mitosis in breast cancer. Embo Molecular Medicine. PMID 30108112 DOI: 10.15252/Emmm.201708566  0.385
2017 Kalimutho M, Bain AL, Mukherjee B, Nag P, Nanayakkara DM, Harten SK, Harris JL, Subramanian GN, Sinha D, Shirasawa S, Srihari S, Burma S, Khanna KK. Enhanced dependency of KRAS mutant colorectal cancer cells on RAD51-dependent homologous recombination repair identified from genetic interactions in Saccharomyces cerevisiae. Molecular Oncology. PMID 28173629 DOI: 10.1002/1878-0261.12040  0.338
2016 Fard AT, Srihari S, Mar JC, Ragan MA. Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks. Npj Systems Biology and Applications. 2: 16001. PMID 28725466 DOI: 10.1038/npjsba.2016.1  0.542
2016 Srihari S, Kalimutho M, Lal S, Singla J, Patel D, Simpson PT, Khanna KK, Ragan MA. Understanding the functional impact of copy number alterations in breast cancer using a network modeling approach. Molecular Biosystems. PMID 26805938 DOI: 10.1039/C5Mb00655D  0.601
2016 Srihari S, Kalimutho M, Singla J, Davidson A, Wong L, Simpson P, Khanna KK, Ragan M. Identifying genetic vulnerabilities in cancers driven by defects in DNA-damage response F1000research. 5. DOI: 10.7490/F1000Research.1111789.1  0.542
2016 Srihari S, Srihari S. Microbes and cancer: Coming a full circle Peerj. DOI: 10.7287/Peerj.Preprints.2448V1  0.353
2016 Srihari S, Singla J, Wong L, Simpson P, Khanna K, Ragan M. Abstract PD6-05: Identifying genetic vulnerabilities in cancers driven by defects in DNA-damage response Cancer Research. 76. DOI: 10.1158/1538-7445.Sabcs15-Pd6-05  0.43
2015 Nguyen NN, Srihari S, Leong HW, Chong KF. EnzDP: Improved enzyme annotation for metabolic network reconstruction based on domain composition profiles. Journal of Bioinformatics and Computational Biology. 13: 1543003. PMID 26542446 DOI: 10.1142/S0219720015430039  0.629
2015 Kalimutho M, Parsons K, Mittal D, López JA, Srihari S, Khanna KK. Targeted Therapies for Triple-Negative Breast Cancer: Combating a Stubborn Disease. Trends in Pharmacological Sciences. PMID 26538316 DOI: 10.1016/J.Tips.2015.08.009  0.336
2015 Liu C, Srihari S, Lal S, Gautier B, Simpson PT, Khanna KK, Ragan MA, Lê Cao KA. Personalised pathway analysis reveals association between DNA repair pathway dysregulation and chromosomal instability in sporadic breast cancer. Molecular Oncology. PMID 26456802 DOI: 10.1016/J.Molonc.2015.09.007  0.592
2015 Srihari S, Singla J, Wong L, Ragan MA. Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer. Biology Direct. 10: 57. PMID 26427375 DOI: 10.1186/S13062-015-0086-1  0.616
2015 Jeffery J, Sinha D, Srihari S, Kalimutho M, Khanna KK. Beyond cytokinesis: the emerging roles of CEP55 in tumorigenesis. Oncogene. PMID 25915844 DOI: 10.1038/Onc.2015.128  0.364
2015 Srihari S, Yong CH, Patil A, Wong L. Methods for protein complex prediction and their contributions towards understanding the organisation, function and dynamics of complexes. Febs Letters. PMID 25913176 DOI: 10.1016/J.Febslet.2015.04.026  0.449
2015 Taherian-Fard A, Srihari S, Ragan MA. Breast cancer classification: linking molecular mechanisms to disease prognosis. Briefings in Bioinformatics. 16: 461-74. PMID 24950687 DOI: 10.1093/Bib/Bbu020  0.584
2015 Fard AT, Srihari S, Mar JC, Ragan MA. Modeling the landscape of cellular development using the Hopfield network F1000research. 6. DOI: 10.7490/F1000Research.1097980.1  0.561
2015 Srihari S, Yong CH, Patil A, Wong L. Computational methods for protein complex prediction from protein interaction networks F1000research. 6. DOI: 10.7490/F1000Research.1097916.1  0.404
2015 Kalimutho M, Waddell N, Jeffry J, Srihari S, Khanna KK. Abstract 3008: CEP55 is a determinant of genomic instability in aneuploid breast cancer cells and facilitates anti-mitotic drugs resistance by interacting directly with HSF1 Cancer Research. 75: 3008-3008. DOI: 10.1158/1538-7445.Am2015-3008  0.41
2014 Srihari S, Raman V, Hon Wai Leong, Ragan MA. Evolution and Controllability of Cancer Networks: A Boolean Perspective. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 83-94. PMID 26355510 DOI: 10.1109/Tcbb.2013.128  0.633
2014 Srihari S, Madhamshettiwar PB, Song S, Liu C, Simpson PT, Khanna KK, Ragan MA. Complex-based analysis of dysregulated cellular processes in cancer. Bmc Systems Biology. 8: S1. PMID 25521701 DOI: 10.1186/1752-0509-8-S4-S1  0.764
2014 Liu C, Srihari S, Cao KA, Chenevix-Trench G, Simpson PT, Ragan MA, Khanna KK. A fine-scale dissection of the DNA double-strand break repair machinery and its implications for breast cancer therapy. Nucleic Acids Research. 42: 6106-27. PMID 24792170 DOI: 10.1093/Nar/Gku284  0.578
2014 Srihari S, Raman V, Wai Leong H, Ragan MA. Evolution and controllability of cancernetworks: A boolean perspective Ieee/Acm Transactions On Computational Biology and Bioinformatics. 11: 83-94. DOI: 10.1109/TCBB.2013.128  0.412
2013 Nguyen PV, Srihari S, Leong HW. Identifying conserved protein complexes between species by constructing interolog networks. Bmc Bioinformatics. 14: S8. PMID 24564762 DOI: 10.1186/1471-2105-14-S16-S8  0.691
2013 Srihari S, Raman V, Leong HW, Ragan MA. Evolution and Controllability of Cancer Networks: A Boolean Perspective. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 24166654 DOI: 10.7490/F1000Research.1094485.1  0.732
2013 Srihari S, Ragan MA. Systematic tracking of dysregulated modules identifies novel genes in cancer. Bioinformatics (Oxford, England). 29: 1553-61. PMID 23613489 DOI: 10.1093/Bioinformatics/Btt191  0.6
2013 Srihari S, Leong HW. A survey of computational methods for protein complex prediction from protein interaction networks. Journal of Bioinformatics and Computational Biology. 11: 1230002. PMID 23600810 DOI: 10.1142/S021972001230002X  0.691
2013 Srihari S, Liu C, Taherian-Fard A, Simpson PT, Khanna KK, Ragan MA. Harnessing DNA-damage response pathways for breast cancer therapy: a synthetic lethality paradigm F1000research. 4. DOI: 10.7490/F1000Research.1094535.1  0.567
2012 Srihari S, Leong HW. Temporal dynamics of protein complexes in PPI networks: a case study using yeast cell cycle dynamics. Bmc Bioinformatics. 13: S16. PMID 23282200 DOI: 10.1186/1471-2105-13-S17-S16  0.669
2012 Srihari S, Leong HW. Employing functional interactions for characterisation and detection of sparse complexes from yeast PPI networks. International Journal of Bioinformatics Research and Applications. 8: 286-304. PMID 22961456 DOI: 10.1504/Ijbra.2012.048962  0.692
2012 Srihari S. Controllability of cancer networks: a Boolean perspective F1000research. 3. DOI: 10.7490/F1000Research.1092821.1  0.414
2012 Srihari S, Leong HW. Extending the MCL-CA algorithm for protein complex detection from weighted PPI networks F1000research. 3. DOI: 10.7490/F1000Research.1092784.1  0.422
2012 Srihari S, Leong HW. Temporal "reusability" of 'static' protein complex components during the yeast cell cycle F1000research. 3. DOI: 10.7490/F1000Research.1092769.1  0.351
2010 Ning K, Ng HK, Srihari S, Leong HW, Nesvizhskii AI. Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology. Bmc Bioinformatics. 11: 505. PMID 20939873 DOI: 10.1186/1471-2105-11-505  0.704
2010 Srihari S, Ning K, Leong HW. MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure. Bmc Bioinformatics. 11: 504. PMID 20939868 DOI: 10.1186/1471-2105-11-504  0.728
2009 Srihari S, Ning K, Leong HW. Refining Markov Clustering for protein complex prediction by incorporating core-attachment structure. Genome Informatics. International Conference On Genome Informatics. 23: 159-68. PMID 20180271  0.691
2008 Srihari S, Ng HK, Ning K, Leong HW. Detecting hubs and quasi cliques in scale-free networks Proceedings - International Conference On Pattern Recognition.  0.659
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