Robert Cedergren - Publications

Affiliations: 
Université de Montréal, Montréal, Canada 
Area:
Molecular Biology

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2002 Vazquez-Tello A, Castán P, Moreno R, Smith JM, Berenguer J, Cedergren R. Efficient trans-cleavage by the Schistosoma mansoni SMalpha1 hammerhead ribozyme in the extreme thermophile Thermus thermophilus. Nucleic Acids Research. 30: 1606-12. PMID 11917021 DOI: 10.1093/Nar/30.7.1606  0.423
2001 Bourdeau V, Paquin B, Cedergren R, Delihas N. Cleavage of mitochondria-like transfer RNAs expressed in Escherichia coli Febs Letters. 497: 90-94. PMID 11377419 DOI: 10.1016/S0014-5793(01)02443-7  0.418
2001 Li J, Maga JA, Cermakian N, Cedergren R, Feagin JE. Identification and characterization of a Plasmodium falciparum RNA polymerase gene with similarity to mitochondrial RNA polymerases Molecular and Biochemical Parasitology. 113: 261-269. PMID 11295180 DOI: 10.1016/S0166-6851(01)00223-7  0.419
2000 Rojas AA, Vazquez-Tello A, Ferbeyre G, Venanzetti F, Bachmann L, Paquin B, Sbordoni V, Cedergren R. Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets. Nucleic Acids Research. 28: 4037-43. PMID 11024185 DOI: 10.1093/Nar/28.20.4037  0.335
2000 Ferbeyre G, Bourdeau V, Pageau M, Miramontes P, Cedergren R. Distribution of hammerhead and hammerhead-like RNA motifs through the GenBank Genome Research. 10: 1011-1019. PMID 10899150 DOI: 10.1101/Gr.10.7.1011  0.401
2000 Leclerc F, Llorente B, Cedergren R. [27] Structure-function relationships of RNA: A modeling approach Methods in Enzymology. 317: 457-470. PMID 10829295 DOI: 10.1016/S0076-6879(00)17029-6  0.434
1999 Bourdeau V, Ferbeyre G, Pageau M, Paquin B, Cedergren R. The distribution of RNA motifs in natural sequences Nucleic Acids Research. 27: 4457-4467. PMID 10536156 DOI: 10.1093/Nar/27.22.4457  0.447
1999 Blancafort P, Steinberg SV, Paquin B, Klinck R, Scott JK, Cedergren R. The recognition of a noncanonical RNA base pair by a zinc finger protein. Chemistry & Biology. 6: 585-97. PMID 10421761 DOI: 10.1016/S1074-5521(99)80091-X  0.37
1999 Samarsky DA, Ferbeyre G, Bertrand E, Singer RH, Cedergren R, Fournier MJ. A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency. Proceedings of the National Academy of Sciences of the United States of America. 96: 6609-14. PMID 10359759 DOI: 10.1073/Pnas.96.12.6609  0.407
1998 Lemieux S, Chartrand P, Cedergren R, Major F. Modeling active RNA structures using the intersection of conformational space: application to the lead-activated ribozyme. Rna (New York, N.Y.). 4: 739-49. PMID 9671048 DOI: 10.1017/S1355838298971266  0.717
1998 Ferbeyre G, Smith JM, Cedergren R. Schistosome satellite DNA encodes active hammerhead ribozymes Molecular and Cellular Biology. 18: 3880-3888. PMID 9632772 DOI: 10.1128/Mcb.18.7.3880  0.428
1998 Bourdeau V, Steinberg SV, Ferbeyre G, Emond R, Cermakian N, Cedergren R. Amber suppression in Escherichia coli by unusual mitochondria-like transfer RNAs Proceedings of the National Academy of Sciences of the United States of America. 95: 1375-1380. PMID 9465022 DOI: 10.1073/Pnas.95.4.1375  0.378
1998 Gray MW, Lang BF, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage E, Littlejohn TG, Plante I, Rioux P, Saint-Louis D, Zhu Y, Burger G. Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Research. 26: 865-78. PMID 9461442 DOI: 10.1093/Nar/26.4.865  0.322
1998 Leclerc F, Cedergren R. Modeling RNA-ligand interactions: the Rev-binding element RNA-aminoglycoside complex. Journal of Medicinal Chemistry. 41: 175-182. PMID 9457241 DOI: 10.1021/Jm970372R  0.384
1998 Cedergren R, Major F. Modeling the Tertiary Structure of RNA Cold Spring Harbor Monograph Archive. 35: 37-75. DOI: 10.1101/087969509.35.37  0.666
1997 Cousineau B, Leclerc F, Cedergren R. On the Origin of Protein Synthesis Factors: A Gene Duplication/Fusion Model Journal of Molecular Evolution. 45: 661-670. PMID 9419243 DOI: 10.1007/Pl00006270  0.386
1997 Blancafort P, Ferbeyre G, Sariol C, Cedergren R. PolI-driven integrative expression vectors for yeast. Journal of Biotechnology. 56: 41-7. PMID 9246790 DOI: 10.1016/S0168-1656(97)00078-3  0.382
1997 Lang BF, Burger G, O'Kelly CJ, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Gray MW. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature. 387: 493-7. PMID 9168110 DOI: 10.1038/387493A0  0.319
1997 Leclerc F, Srinivasan J, Cedergren R. Predicting RNA structures: the model of the RNA element binding Rev meets the NMR structure. Folding and Design. 2: 141-147. PMID 9135987 DOI: 10.1016/S1359-0278(97)00019-9  0.478
1997 Chen H, Ferbeyre G, Cedergren R. Efficient Hammerhead Ribozyme and Antisense RNA Targeting In A Slow Ribosome Escherichia Coli Mutant Nature Biotechnology. 15: 432-435. PMID 9131620 DOI: 10.1038/Nbt0597-432  0.381
1997 Chartrand P, Usman N, Cedergren R. Effect of Structural Modifications on the Activity of the Leadzyme Biochemistry. 36: 3145-3150. PMID 9115990 DOI: 10.1021/Bi962219P  0.333
1997 Steinberg S, Leclerc F, Cedergren R. Structural rules and conformational compensations in the tRNA L-form. Journal of Molecular Biology. 266: 269-282. PMID 9047362 DOI: 10.1006/Jmbi.1996.0803  0.386
1996 Srinivasan J, Leclerc F, Xu W, Ellington AD, Cedergren R. A docking and modelling strategy for peptide–RNA complexes: applications to BIV Tat–TAR and HIV Rev–RBE Folding and Design. 1: 463-472. PMID 9080192 DOI: 10.1016/S1359-0278(96)00062-4  0.366
1996 Ellington AD, Leclerc F, Cedergren R. An RNA groove Nature Structural & Molecular Biology. 3: 981-984. PMID 8946846 DOI: 10.1038/Nsb1296-981  0.407
1996 Bratty J, Ferbeyre G, Molinaro C, Cedergren R. Stimulation of mitotic recombination upon transcription from the yeast GAL1 promoter but not from other RNA polymerase I, II and III promoters. Current Genetics. 30: 381-8. PMID 8929389 DOI: 10.1007/S002940050146  0.607
1996 Ferbeyre G, Bratty J, Chen H, Cedergren R. Cell cycle arrest promotes trans-hammerhead ribozyme action in yeast Journal of Biological Chemistry. 271: 19318-19323. PMID 8702616 DOI: 10.1074/Jbc.271.32.19318  0.354
1996 Llorente B, Leclerc F, Cedergren R. Using SAR and QSAR analysis to model the activity and structure of the quinolone-DNA complex. Bioorganic & Medicinal Chemistry. 4: 61-71. PMID 8689241 DOI: 10.1016/0968-0896(96)83749-7  0.333
1996 Cermakian N, Ikeda TM, Cedergren R, Gray MW. Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage. Nucleic Acids Research. 24: 648-54. PMID 8604305 DOI: 10.1093/Nar/24.4.648  0.369
1996 Cedergren R, Miramontes P. The puzzling origin of the genetic code Trends in Biochemical Sciences. 21: 199-200. DOI: 10.1016/S0968-0004(96)80014-4  0.337
1995 Miramontes P, Medrano L, Cerpa C, Cedergren R, Ferbeyre G, Cocho G. Structural and thermodynamic properties of DNA uncover different evolutionary histories Journal of Molecular Evolution. 40: 698-704. PMID 7643419 DOI: 10.1007/Bf00160519  0.312
1995 Chartrand P, Harvey SC, Ferbeyre G, Usman N, Cedergren R. An oligodeoxyribonucleotide that supports catalytic activity in the hammerhead ribozyme domain. Nucleic Acids Research. 23: 4092-6. PMID 7479070 DOI: 10.1093/Nar/23.20.4092  0.413
1994 Yang J, Cedergren R, Nadal-Ginard B. Catalytic activity of an RNA domain derived from the U6-U4 RNA complex Science. 263: 77-81. PMID 8272868 DOI: 10.1126/Science.8272868  0.427
1994 Steinberg S, Gautheret D, Cedergren R. Fitting the structurally diverse animal mitochondrial tRNAsSer to common three-dimensional constraitns Journal of Molecular Biology. 236: 982-989. PMID 8120906 DOI: 10.1016/0022-2836(94)90004-3  0.373
1994 Steinberg S, Cedergren R. Structural compensation in atypical mitochondrial tRNAs Nature Structural & Molecular Biology. 1: 507-510. PMID 7664076 DOI: 10.1038/Nsb0894-507  0.304
1994 Leclerc F, Cedergren R, Ellington AD. A three-dimensional model of the Rev-binding element of HIV-1 derived from analyses of aptamers. Nature Structural & Molecular Biology. 1: 293-300. PMID 7664035 DOI: 10.1038/Nsb0594-293  0.38
1994 Laferrière A, Gautheret D, Cedergren R. An RNA pattern matching program with enhanced performance and portability. Bioinformatics. 10: 211-212. PMID 7517334 DOI: 10.1093/Bioinformatics/10.2.211  0.388
1993 Major F, Gautheret D, Cedergren R. Reproducing the three-dimensional structure of a tRNA molecule from structural constraints Proceedings of the National Academy of Sciences of the United States of America. 90: 9408-9412. PMID 8415714 DOI: 10.1073/Pnas.90.20.9408  0.637
1993 Gautheret D, Major F, Cedergren R. Modeling the Three-dimensional Structure of RNA Using Discrete Nucleotide Conformational Sets Journal of Molecular Biology. 229: 1049-1064. PMID 7680379 DOI: 10.1006/Jmbi.1993.1104  0.653
1993 Gautheret D, Cedergren R. Modeling the three-dimensional structure of RNA. The Faseb Journal. 7: 97-105. PMID 7678567 DOI: 10.1096/Fasebj.7.1.7678567  0.477
1993 Gray MW, Cedergren R. The new age of RNA. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 7: 4-6. PMID 7678565 DOI: 10.1096/Fasebj.7.1.7678565  0.357
1993 Bratty J, Chartrand P, Ferbeyre G, Cedergren R. The hammerhead RNA domain, a model ribozyme Bba - Gene Structure and Expression. 1216: 345-359. PMID 7505618 DOI: 10.1016/0167-4781(93)90001-T  0.396
1992 Yang JH, Usman N, Chartrand P, Cedergren R. Minimum ribonucleotide requirement for catalysis by the RNA hammerhead domain. Biochemistry. 31: 5005-5009. PMID 1599926 DOI: 10.1021/Bi00136A013  0.405
1992 Cousineau B, Cerpa C, Lefebvre J, Cedergren R. The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms. Gene. 120: 33-41. PMID 1398121 DOI: 10.1016/0378-1119(92)90006-B  0.316
1992 Usman N, Cedergren R. Exploiting the chemical synthesis of RNA. Trends in Biochemical Sciences. 17: 334-339. PMID 1384179 DOI: 10.1016/0968-0004(92)90306-T  0.436
1991 Major F, Turcotte M, Gautheret D, Lapalme G, Fillion E, Cedergren R. The combination of symbolic and numerical computation for three-dimensional modeling of RNA Science. 253: 1255-1260. PMID 1716375 DOI: 10.1126/Science.1716375  0.785
1991 Major F, Lapalme G, Cedergren R. Domain generating functions for solving constraint satisfaction problems Journal of Functional Programming. 1: 213-227. DOI: 10.1017/S0956796800020050  0.685
1991 Major F, Lapalme G, Gautheret D, Cedergren R. Toward a unified information system for macromolecular folding and conformational prediction Journal of Molecular Graphics. 9: 56. DOI: 10.1016/0263-7855(91)80063-6  0.673
1990 Ftouhi N, Cedergren R. The nucleotide sequence of a small metT tRNA operon from Photobacterium leiognathi. Nucleic Acids Research. 18: 3662-3662. PMID 2362826 DOI: 10.1093/Nar/18.12.3662  0.319
1990 Paquette J, Nicoghosian K, Qi G, Beauchemin N, Cedergren R. The conformation of single-stranded nucleic acids tDNA versus tRNA. Febs Journal. 189: 259-265. PMID 2338076 DOI: 10.1111/J.1432-1033.1990.Tb15485.X  0.415
1990 Perreault JP, Wu TF, Cousineau B, Ogilvie KK, Cedergren R. Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity. Nature. 344: 565-7. PMID 2181322 DOI: 10.1038/344565A0  0.454
1990 Bratty J, Wu TF, Nicoghosian K, Ogilvie KK, Perreault JP, Keith G, Cedergren R. Characterization of a chemically synthesized RNA having the sequence of the yeast initiator tRNA(Met). Febs Letters. 269: 60-4. PMID 2117559 DOI: 10.1016/0014-5793(90)81118-8  0.435
1990 Gautheret D, Major F, Cedergren R. Pattern searching/alignment with RNA primary and secondary structures: An effective descriptor for tRNA Bioinformatics. 6: 325-331. PMID 1701686 DOI: 10.1093/Bioinformatics/6.4.325  0.639
1990 Gautheret D, Major F, Cedergren R. Computer modeling and display of RNA secondary and tertiary structures Methods in Enzymology. 183: 318-330. PMID 1690337 DOI: 10.1016/0076-6879(90)83021-Z  0.68
1990 Cedergren R. RNA--the catalyst. Biochemistry and Cell Biology. 68: 903-906. DOI: 10.1139/O90-134  0.419
1990 Major F, Lapalme G, Gautheret D, Cedergren R. RNA structure prediction using experimental data in constraint-satisfaction problem solving algorithms Journal of Molecular Graphics. 8: 239. DOI: 10.1016/0263-7855(90)80038-H  0.723
1990 Turcotte M, Major F, Lapalme G, Gautheret D, Cedergren R. Using functional and logic programming in molecular graphics applications Journal of Molecular Graphics. 8: 229. DOI: 10.1016/0263-7855(90)80011-4  0.721
1989 Perreault JP, Pon RT, Jiang MY, Usman N, Pika J, Ogilvie KK, Cedergren R. The synthesis and functional evaluation of RNA and DNA polymers having the sequence of Escherichia coli tRNA(fMet). European Journal of Biochemistry / Febs. 186: 87-93. PMID 2480897 DOI: 10.1111/J.1432-1033.1989.Tb15181.X  0.401
1989 Major F, Lapalme G, Gautheret D, Cedergren R. Using functional languages to study the relationships between nucleic acid primary, secondary and tertiary structure elements Journal of Molecular Graphics. 7: 182. DOI: 10.1016/0263-7855(89)80046-3  0.694
1988 Cedergren R, Gautheret D, Lapalme G, Major F. A secondary and tertiary structure editor for nucleic acids Bioinformatics. 4: 143-146. PMID 3382988 DOI: 10.1093/Bioinformatics/4.1.143  0.721
1988 Major F, Feldmann R, Lapalme G, Cedergren R. FUS: A system to simulate conformational changes in biological macromolecules Bioinformatics. 4: 445-451. PMID 3208178 DOI: 10.1093/Bioinformatics/4.4.445  0.718
1988 Giroux S, Cedergren R. Tandemly repeated tRNA pseudogenes in photobacterium. Proceedings of the National Academy of Sciences of the United States of America. 85: 9101-5. PMID 3194413 DOI: 10.1073/Pnas.85.23.9101  0.326
1988 Cedergren R, Gray MW, Abel Y, Sankoff D. The evolutionary relationships among known life forms. Journal of Molecular Evolution. 28: 98-112. PMID 3148747 DOI: 10.1007/Bf02143501  0.364
1988 Cedergren R, Lang BF, Gravel D. The relationship between RNA catalytic processes. Origins of Life and Evolution of Biospheres. 18: 299-305. PMID 2465524 DOI: 10.1007/Bf01804676  0.42
1988 Lang BF, Cedergren R, Gray MW. The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations. European Journal of Biochemistry. 169: 527-37. PMID 2446871 DOI: 10.1111/J.1432-1033.1987.Tb13641.X  0.341
1988 Major F, Cedergren R, Feldmann RJ. FUS: A rule-based system for the rapid evaluation of folding and unfolding strategies Journal of Molecular Graphics. 6: 213. DOI: 10.1016/S0263-7855(98)80016-7  0.542
1987 Grosjean H, Henau SD, Doi TT, Yamane AA, Ohtsuka EE, Ikehara MM, Beauchemin NN, Nicoghosian KK, Cedergren R. The in vivo stability, maturation and aminoacylation of anticodon-substituted Escherichia coli initiator methionine tRNAs Febs Journal. 166: 325-332. PMID 3301339 DOI: 10.1111/J.1432-1033.1987.Tb13518.X  0.38
1987 Nicoghosian K, Bigras M, Sankoff D, Cedergren R. Archetypical features in tRNA families Journal of Molecular Evolution. 26: 341-346. PMID 3131535 DOI: 10.1007/Bf02101153  0.338
1987 Cedergren R, Grosjean H. RNA design by in vitro RNA recombination and synthesis. Biochemistry and Cell Biology. 65: 677-692. PMID 2449230 DOI: 10.1139/O87-090  0.418
1987 Cedergren R, Lang BF, Gravel D. A mechanism for the RNA-catalyzed formation of 5'-phosphates. The origin of nucleases. Febs Letters. 226: 63-66. PMID 2446927 DOI: 10.1016/0014-5793(87)80551-3  0.327
1987 Cedergren R, Grosjean H. On the primacy of primordial RNA Biosystems. 20: 175-180. PMID 2440500 DOI: 10.1016/0303-2647(87)90043-8  0.465
1987 Beauchemin N, Paquette J, Cedergren R. Site-directed protection of RNA during nuclease digestion. Biochemistry and Cell Biology. 65: 43-49. PMID 2436641 DOI: 10.1139/O87-006  0.416
1986 Cedergren R, Grosjean H, Larue B. Primordial reading of genetic information Biosystems. 19: 259-266. PMID 3801600 DOI: 10.1016/0303-2647(86)90002-X  0.331
1986 Wong JT, Cedergren R. Natural selection versus primitive gene structure as determinant of codon usage. European Journal of Biochemistry / Febs. 159: 175-80. PMID 3091367 DOI: 10.1111/J.1432-1033.1986.Tb09849.X  0.335
1986 Beauchemin N, Grosjean H, Cedergren R. Construction, aminoacylation and 80 S ribosomal complex formation with a yeast initiator tRNA having an arginine CCU anticodon Febs Letters. 202: 12-18. DOI: 10.1016/0014-5793(86)80639-1  0.364
1985 Grosjean H, Nicoghosian K, Haumont E, Söll D, Cedergren R. Nucleotide sequences of two serine tRNAs with a GGA anticodon: the structure-function relationships in the serine family of E. coli tRNAs Nucleic Acids Research. 13: 5697-5706. PMID 3898020 DOI: 10.1093/Nar/13.15.5697  0.342
1985 Nicoghosian K, Gu X, Cedergren R. Halobacterium cutirubrum tRNA sequences Febs Letters. 193: 255-260. DOI: 10.1016/0014-5793(85)80164-2  0.37
1983 Xian-Rong G, Nicoghosian K, Cedergren RJ. 5S RNA sequence from the Philosamia silkworm: evidence for variable evolutionary rates in insect 5S RNA. Nucleic Acids Research. 10: 5711-6. PMID 7145713 DOI: 10.1093/NAR/10.18.5711  0.335
1982 Lapalme G, Cedergren RJ, Sankoff D. An algorithm for the display of nucleic acid secondary structure Nucleic Acids Research. 10: 8351-8356. PMID 7162994 DOI: 10.1093/Nar/10.24.8351  0.661
1982 Newhouse N, Nicoghosian K, Cedergren RJ. The nucleotide sequence of phenylalanine tRNA and 5S RNA from Rhodospirillum rubrum. Canadian Journal of Biochemistry. 59: 921-32. PMID 6174192 DOI: 10.1139/O81-130  0.33
1981 Cedergren RJ, Sankoff D, LaRue B, Grosjean H. The evolving tRNA molecule Crc Critical Reviews in Biochemistry. 11: 35-104. PMID 7030617 DOI: 10.3109/10409238109108699  0.304
1980 Cedergren RJ, LaRue B, Sankoff D, Lapalme G, Grosjean H. Convergence and minimal mutation criteria for evaluating early events in tRNA evolution Proceedings of the National Academy of Sciences of the United States of America. 77: 2791-2795. PMID 6930666 DOI: 10.1073/Pnas.77.5.2791  0.606
1978 Sankoff D, Morin AM, Cedergren RJ. The evolution of 5S RNA secondary structures Canadian Journal of Biochemistry. 56: 440-443. PMID 667690 DOI: 10.1139/O78-068  0.375
1978 Grosjean H, Sankoff D, Jou WM, Fiers W, Cedergren RJ. Bacteriophage MS2 RNA: A correlation between the stability of the codon: Anticodon interaction and the choice of code words Journal of Molecular Evolution. 12: 113-119. PMID 368346 DOI: 10.1007/Bf01733262  0.404
1976 Cedergren RJ, Sankoff D. Evolutionary origin of 5.8S ribosomal RNA Nature. 260: 74-75. PMID 772443 DOI: 10.1038/260074A0  0.31
1976 Sankoff D, Cedergren RJ, Lapalme G. Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA Journal of Molecular Evolution. 7: 133-149. PMID 772222 DOI: 10.1007/Bf01732471  0.626
1974 Bollen A, Cedergren RJ, Sankoff D, Lapalme G. Spatial configuration of ribosomal proteins: A computer-generated model of the 30S subunit Biochemical and Biophysical Research Communications. 59: 1069-1078. PMID 4415849 DOI: 10.1016/S0006-291X(74)80088-4  0.563
1974 Ecarot B, Cedergren RJ. Structure-function correlations of formylmethionine transfer RNA. Biochemical and Biophysical Research Communications. 59: 400-5. PMID 4366961 DOI: 10.1016/S0006-291X(74)80220-2  0.307
1968 Blomquist AT, Cedergren RJ. Deuterated amino acids. IV. The synthesis of L-phenyl d5-alanine-2,3,3-d3 Canadian Journal of Chemistry. 46: 1053-1056. DOI: 10.1139/V68-178  0.51
1966 Blomquist AT, Cedergren RJ, Hiscock BF, Tripp SL, Harpp DN. Synthesis of highly deuterated amino acids. Proceedings of the National Academy of Sciences of the United States of America. 55: 453-6. PMID 5221231 DOI: 10.1073/Pnas.55.3.453  0.626
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