Yaping Liu - Publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Epigenomics, Computational Biology

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li Y, Liu Y, Liang J, Wang T, Sun M, Zhang Z. Gymnemic Acid Ameliorate Hyperglycemia Through PI3K/AKT and AMPK Mediated Signaling Pathway in T2DM Rats. Journal of Agricultural and Food Chemistry. PMID 31609623 DOI: 10.1021/acs.jafc.9b04931  0.36
2019 Li G, Liu Y, Zhang Y, Kubo N, Yu M, Fang R, Kellis M, Ren B. Joint profiling of DNA methylation and chromatin architecture in single cells. Nature Methods. PMID 31384045 DOI: 10.1038/s41592-019-0502-z  0.48
2019 Li Y, Guo D, Ren M, Zhao Y, Wang X, Chen Y, Liu Y, Lu G, He S. Long non-coding RNA SNAI3-AS1 promotes the proliferation and metastasis of hepatocellular carcinoma by regulating the UPF1/Smad7 signalling pathway. Journal of Cellular and Molecular Medicine. PMID 31264769 DOI: 10.1111/jcmm.14513  0.36
2019 Li L, Shao J, Wang J, Liu Y, Zhang Y, Zhang M, Zhang J, Ren X, Su S, Li Y, Cao J, Zang W. MiR-30b-5p attenuates oxaliplatin-induced peripheral neuropathic pain through the voltage-gated sodium channel Na1.6 in rats. Neuropharmacology. PMID 31054938 DOI: 10.1016/j.neuropharm.2019.04.024  0.36
2019 Li Y, Sun M, Liu Y, Liang J, Wang T, Zhang Z. Gymnemic acid alleviates type 2 diabetes mellitus and suppresses endoplasmic reticulum stress in vivo and in vitro. Journal of Agricultural and Food Chemistry. PMID 30864442 DOI: 10.1021/acs.jafc.9b00431  0.36
2019 Liu Y, Zhang J, Lam SP, Yu MWM, Li SX, Zhou J, Chan NY, Wang J, Feng H, Chan A, Mok V, Wing YK. Electromyography activity level in rapid eye movement sleep predicts neurodegenerative diseases in idiopathic rapid eye movement sleep behavior disorder: a 5-year longitudinal study. Sleep Medicine. PMID 30852128 DOI: 10.1016/j.sleep.2019.01.018  0.36
2018 Chen L, Luo C, Liu S, Chen W, Liu Y, Li Y, Du Y, Zou H, Pan J. Excessive daytime sleepiness in general hospital nurses: prevalence, correlates, and its association with adverse events. Sleep & Breathing = Schlaf & Atmung. PMID 30117085 DOI: 10.1007/s11325-018-1684-9  0.36
2018 Huang H, Shen Y, Gu W, Wang W, Wang Y, Qi M, Shen J, Qiu Z, Yu S, Zhou Z, Chen B, Chen L, Chen Y, Cui H, Du J, ... ... Liu Y, et al. [Discussion on the standard of clinical genetic testing report and the consensus of gene testing industry]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi = Zhonghua Yixue Yichuanxue Zazhi = Chinese Journal of Medical Genetics. 35: 1-8. PMID 29419850 DOI: 10.3760/cma.j.issn.1003-9406.2018.01.001  0.36
2017 Liu Y, Wang T, He X, Li Y, Wang T. Cerebrospinal fluid CD4(+) T lymphocyte-derived miRNA-let-7b can enhances the diagnostic performance of Alzheimer's disease biomarkers. Biochemical and Biophysical Research Communications. PMID 29170128 DOI: 10.1016/j.bbrc.2017.11.122  0.36
2017 Luo H, Xi Y, Li W, Li J, Li Y, Dong S, Peng L, Liu Y, Yu W. Cell identity bookmarking through heterogeneous chromatin landscape maintenance during the cell cycle. Human Molecular Genetics. 26: 4231-4243. PMID 29088426 DOI: 10.1093/hmg/ddx312  0.36
2017 Liu Y, Sarkar A, Kheradpour P, Ernst J, Kellis M. Evidence of reduced recombination rate in human regulatory domains. Genome Biology. 18: 193. PMID 29058599 DOI: 10.1186/s13059-017-1308-x  0.48
2017 Li Y, Zhao Y, Zhou X, Ni W, Dai Z, Yang D, Hao J, Luo L, Liu Y, Luo X, Zhao X. Cytotoxic Indole Alkaloid 3α-Acetonyltabersonine Induces Glioblastoma Apoptosis via Inhibition of DNA Damage Repair. Toxins. 9. PMID 28452946 DOI: 10.3390/toxins9050150  0.36
2017 Li S, Cong Y, Liu Y, Wang T, Shuai Q, Chen N, Gai J, Li Y. Optimization of Agrobacterium-Mediated Transformation in Soybean. Frontiers in Plant Science. 8: 246. PMID 28286512 DOI: 10.3389/fpls.2017.00246  0.36
2017 Gao M, Liu Y, Ma X, Shuai Q, Gai J, Li Y. Evaluation of Reference Genes for Normalization of Gene Expression Using Quantitative RT-PCR under Aluminum, Cadmium, and Heat Stresses in Soybean. Plos One. 12: e0168965. PMID 28046130 DOI: 10.1371/journal.pone.0168965  0.36
2016 Wang J, Huo S, Zhang Y, Liu Y, Fan W. Effect of different pre-fermentation treatments on polyphenols, color, and volatile compounds of three wine varieties. Food Science and Biotechnology. 25: 735-743. PMID 30263331 DOI: 10.1007/s10068-016-0127-2  0.36
2016 Dong F, Liu Y, Zhang Z, Guo R, Ma L, Qu X, Yu H, Fan H, Yao R. Postnatal alteration of monocarboxylate transporter 1 expression in the rat corpus callosum. Physiological Research. PMID 27982679  0.36
2016 Ma H, Zhang J, Zhang Z, Liu Y, Fang J. A fast response and red emission probe for mammalian thioredoxin reductase. Chemical Communications (Cambridge, England). 52: 12060-12063. PMID 27709154 DOI: 10.1039/c6cc04984b  0.36
2016 Zhang Q, Wang R, Liu Y, Zhang Y, Wang S, Cao Y, Zhao Y, Liu X, Wang J, Deng X, Gao F, Yang Z, Zhao M, Ge P, Ma Y, et al. Clinical features and long-term outcomes of unilateral moyamoya disease. World Neurosurgery. PMID 27647029 DOI: 10.1016/j.wneu.2016.09.018  0.36
2016 Smith JG, Felix JF, Morrison AC, Kalogeropoulos A, Trompet S, Wilk JB, Gidlöf O, Wang X, Morley M, Mendelson M, Joehanes R, Ligthart S, Shan X, Bis JC, Wang YA, ... ... Liu Y, et al. Discovery of Genetic Variation on Chromosome 5q22 Associated with Mortality in Heart Failure. Plos Genetics. 12: e1006034. PMID 27149122 DOI: 10.1371/journal.pgen.1006034  0.48
2016 Wang N, Liu Y, Cong Y, Wang T, Zhong X, Yang S, Li Y, Gai J. Genome-wide Identification of Soybean U-box E3 Ubiquitin Ligases and Roles of GmPUB8 in Negative Regulation of Drought Stress Response in Arabidopsis. Plant & Cell Physiology. PMID 27057003 DOI: 10.1093/pcp/pcw068  0.36
2016 O'Neil J, Benita Y, Feldman I, Chenard M, Roberts B, Liu Y, Li J, Kral A, Lejnine S, Loboda A, Arthur W, Cristescu R, Haines BB, Winter C, Zhang T, et al. An unbiased oncology compound screen to identify novel combination strategies. Molecular Cancer Therapeutics. PMID 26983881 DOI: 10.1158/1535-7163.MCT-15-0843  1
2015 Lay FD, Liu Y, Kelly TK, Witt H, Farnham PJ, Jones PA, Berman BP. The role of DNA methylation in directing the functional organization of the cancer epigenome. Genome Research. 25: 467-77. PMID 25747664 DOI: 10.1101/gr.183368.114  1
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Liu Y, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/nature14248  0.48
2013 Kasowski M, Kyriazopoulou-Panagiotopoulou S, Grubert F, Zaugg JB, Kundaje A, Liu Y, Boyle AP, Zhang QC, Zakharia F, Spacek DV, Li J, Xie D, Olarerin-George A, Steinmetz LM, Hogenesch JB, et al. Extensive variation in chromatin states across humans. Science (New York, N.Y.). 342: 750-2. PMID 24136358 DOI: 10.1126/science.1242510  0.48
2013 Guertin AD, Li J, Liu Y, Hurd MS, Schuller AG, Long B, Hirsch HA, Feldman I, Benita Y, Toniatti C, Zawel L, Fawell SE, Gilliland DG, Shumway SD. Preclinical evaluation of the WEE1 inhibitor MK-1775 as single-agent anticancer therapy. Molecular Cancer Therapeutics. 12: 1442-52. PMID 23699655 DOI: 10.1158/1535-7163.MCT-13-0025  1
2012 Guertin AD, Martin MM, Roberts B, Hurd M, Qu X, Miselis NR, Liu Y, Li J, Feldman I, Benita Y, Bloecher A, Toniatti C, Shumway SD. Unique functions of CHK1 and WEE1 underlie synergistic anti-tumor activity upon pharmacologic inhibition. Cancer Cell International. 12: 45. PMID 23148684 DOI: 10.1186/1475-2867-12-45  1
2012 Kelly TK, Liu Y, Lay FD, Liang G, Berman BP, Jones PA. Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules. Genome Research. 22: 2497-506. PMID 22960375 DOI: 10.1101/gr.143008.112  1
2012 Liu Y, Siegmund KD, Laird PW, Berman BP. Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data. Genome Biology. 13: R61. PMID 22784381 DOI: 10.1186/gb-2012-13-7-r61  1
2012 Wiggs JL, Yaspan BL, Hauser MA, Kang JH, Allingham RR, Olson LM, Abdrabou W, Fan BJ, Wang DY, Brodeur W, Budenz DL, Caprioli J, Crenshaw A, Crooks K, Delbono E, ... ... Liu Y, et al. Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma. Plos Genetics. 8: e1002654. PMID 22570617 DOI: 10.1371/journal.pgen.1002654  0.48
2012 Wang J, Li Y, Han Z, Zhu Y, Xie Z, Wang J, Liu Y, Li X. Molecular characterization of a ryanodine receptor gene in the rice leaffolder, Cnaphalocrocis medinalis (Guenée). Plos One. 7: e36623. PMID 22567170 DOI: 10.1371/journal.pone.0036623  0.36
2012 Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CP, van Dijk CM, Tollenaar RA, Van Den Berg D, Laird PW. Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains. Nature Genetics. 44: 40-6. PMID 22120008 DOI: 10.1038/ng.969  1
2009 Chen X, Li Q, Wang J, Guo X, Jiang X, Ren Z, Weng C, Sun G, Wang X, Liu Y, Ma L, Chen JY, Wang J, Zen K, Zhang J, et al. Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biology. 10: R78. PMID 19615057 DOI: 10.1186/gb-2009-10-7-r78  0.36
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