| Year |
Citation |
Score |
| 2023 |
Du Z, Shi K, Brown JS, He T, Wu WS, Zhang Y, Lee HC, Zhang D. Condensate cooperativity underlies transgenerational gene silencing. Cell Reports. 42: 112859. PMID 37505984 DOI: 10.1016/j.celrep.2023.112859 |
0.457 |
|
| 2023 |
Esser SP, Rahlff J, Zhao W, Predl M, Plewka J, Sures K, Wimmer F, Lee J, Adam PS, McGonigle J, Turzynski V, Banas I, Schwank K, Krupovic M, Bornemann TLV, ... ... Zhang Y, et al. A predicted CRISPR-mediated symbiosis between uncultivated archaea. Nature Microbiology. PMID 37500801 DOI: 10.1038/s41564-023-01439-2 |
0.506 |
|
| 2022 |
Zhang L, Zhang Y, Jia Y, Ding F, Wang F, Yu G, Wu Y. Characterization of the complete chloroplast genome of subsp. (Actinidiaceae). Mitochondrial Dna. Part B, Resources. 7: 1548-1549. PMID 36081829 DOI: 10.1080/23802359.2022.2110532 |
0.301 |
|
| 2022 |
Liu B, Fang J, Chen H, Sun Y, Yang S, Gao Q, Zhang Y, Chen C. GcvB Regulon Revealed by Transcriptomic and Proteomic Analysis in . International Journal of Molecular Sciences. 23. PMID 36012664 DOI: 10.3390/ijms23169399 |
0.479 |
|
| 2022 |
Yang G, Zhang Y, Wei X, Cui L, Nie X. Genetic Diversity of Transcription Factor Genes in and Mining for Promising Haplotypes for Beneficial Agronomic Traits. Frontiers in Plant Science. 13: 899292. PMID 35873966 DOI: 10.3389/fpls.2022.899292 |
0.319 |
|
| 2021 |
Wang S, Bao X, Feng K, Deng Y, Zhou W, Shao P, Zheng T, Yao F, Yang S, Liu S, Shi R, Bai Z, Xie H, Yu J, Zhang Y, ... Zhang Y, ... ... Zhang Y, et al. Warming-driven migration of core microbiota indicates soil property changes at continental scale. Science Bulletin. 66: 2025-2035. PMID 36654172 DOI: 10.1016/j.scib.2021.01.021 |
0.381 |
|
| 2021 |
Liu B, Gao Q, Zhang X, Chen H, Zhang Y, Sun Y, Yang S, Chen C. CsrA Regulates Swarming Motility and Carbohydrate and Amino Acid Metabolism in . Microorganisms. 9. PMID 34835507 DOI: 10.3390/microorganisms9112383 |
0.445 |
|
| 2021 |
Xiao L, Yu M, Zhang Y, Hu J, Zhang R, Wang J, Guo H, Zhang H, Guo X, Deng T, Lv S, Li X, Huang J, Fan G. Chromosome-scale assembly reveals asymmetric paleo-subgenome evolution and targets for the acceleration of fungal resistance breeding in the nut crop, pecan. Plant Communications. 2: 100247. PMID 34778752 DOI: 10.1016/j.xplc.2021.100247 |
0.312 |
|
| 2021 |
Ding F, Zhang L, Wang Y, Wu Y, Wang F, Zhao Y, Zhang Y. The complete chloroplast genome sequence of var. Mitochondrial Dna. Part B, Resources. 6: 413-414. PMID 33659696 DOI: 10.1080/23802359.2020.1870884 |
0.301 |
|
| 2021 |
Singh NP, De Kumar B, Paulson A, Parrish ME, Scott C, Zhang Y, Florens L, Krumlauf R. Genome-Wide Binding Analyses of HOXB1 Revealed a Novel DNA Binding Motif Associated with Gene Repression. Journal of Developmental Biology. 9. PMID 33546292 DOI: 10.3390/jdb9010006 |
0.334 |
|
| 2020 |
Zhang Y, Chen Y, Zhou Y, Zhang J, Bai H, Zheng C. Comparative Transcriptome Reveals the Genes' Adaption to Herkogamy of (Jack) Voigt. Frontiers in Genetics. 11: 584817. PMID 33363568 DOI: 10.3389/fgene.2020.584817 |
0.301 |
|
| 2020 |
Zhao L, Xie L, Zhang Q, Ouyang W, Deng L, Guan P, Ma M, Li Y, Zhang Y, Xiao Q, Zhang J, Li H, Wang S, Man J, Cao Z, et al. Integrative analysis of reference epigenomes in 20 rice varieties. Nature Communications. 11: 2658. PMID 32461553 DOI: 10.1038/S41467-020-16457-5 |
0.33 |
|
| 2019 |
Zhang Y, Chen S, Wang R. The complete chloroplast genome of (Rubiaceae): an endemic shrub in Himalaya-Hengduan Mountains. Mitochondrial Dna. Part B, Resources. 5: 169-170. PMID 33366471 DOI: 10.1080/23802359.2019.1698371 |
0.308 |
|
| 2019 |
Yang Y, Zhang Y, Chen Y, Gul J, Zhang J, Liu Q, Chen Q. Complete chloroplast genome sequence of the mangrove species and comparative analyses with related species. Peerj. 7: e7713. PMID 31579601 DOI: 10.7717/peerj.7713 |
0.3 |
|
| 2019 |
Lugena AB, Zhang Y, Menet JS, Merlin C. Genome-wide discovery of the daily transcriptome, DNA regulatory elements and transcription factor occupancy in the monarch butterfly brain. Plos Genetics. 15: e1008265. PMID 31335862 DOI: 10.1371/journal.pgen.1008265 |
0.315 |
|
| 2019 |
Olarte RA, Menke J, Zhang Y, Sullivan S, Slot JC, Huang Y, Badalamenti JP, Quandt AC, Spatafora JW, Bushley KE. Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum. Bmc Genomics. 20: 120. PMID 30732559 DOI: 10.1186/S12864-018-5399-X |
0.343 |
|
| 2018 |
Zhang Y, Zhang JW, Jin YH, Li DL, Diao XP. Complete chloroplast genome of an Endangered mangrove plant (C. Presl) Kubitzki (Hernandiaceae). Mitochondrial Dna. Part B, Resources. 3: 231-232. PMID 33474126 DOI: 10.1080/23802359.2018.1437830 |
0.313 |
|
| 2018 |
Zhang Y, Hu L, Osei-Adjei G, Zhang Y, Yang W, Yin Z, Lu R, Sheng X, Yang R, Huang X, Zhou D. Autoregulation of ToxR and Its Regulatory Actions on Major Virulence Gene Loci in . Frontiers in Cellular and Infection Microbiology. 8: 291. PMID 30234024 DOI: 10.3389/fcimb.2018.00291 |
0.332 |
|
| 2017 |
Zhang Y, Zhang J, Yang Y, Liu Q. Complete chloroplast genome of (L.) Less. (Asteraceae) and its phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 2: 918-919. PMID 33474035 DOI: 10.1080/23802359.2017.1413299 |
0.312 |
|
| 2017 |
Arriola MB, Velmurugan N, Zhang Y, Plunkett MH, Hondzo H, Barney BM. Genome Sequences of Chlorella sorokiniana UTEX 1602 and Micractinium conductrix SAG 241.80: Implications to Maltose Excretion by a Green Alga. The Plant Journal : For Cell and Molecular Biology. PMID 29178410 DOI: 10.1111/Tpj.13789 |
0.354 |
|
| 2017 |
Osei-Adjei G, Gao H, Zhang Y, Zhang L, Yang W, Yang H, Yin Z, Huang X, Zhang Y, Zhou D. Regulatory actions of ToxR and CalR on their own genes and type III secretion system 1 in Vibrio parahaemolyticus. Oncotarget. 8: 65809-65822. PMID 29029474 DOI: 10.18632/oncotarget.19498 |
0.31 |
|
| 2017 |
Osei-Adjei G, Gao H, Zhang Y, Zhang L, Yang W, Yang H, Yin Z, Huang X, Zhang Y, Zhou D. Regulatory actions of ToxR and CalR on their own genes and type III secretion system 1 in Vibrio parahaemolyticus. Oncotarget. PMID 28779057 DOI: 10.18632/oncotarget.19498 |
0.31 |
|
| 2016 |
Feng G, Tong M, Xia B, Luo GZ, Wang M, Xie D, Wan H, Zhang Y, Zhou Q, Wang XJ. Ubiquitously expressed genes participate in cell-specific functions via alternative promoter usage. Embo Reports. PMID 27466324 DOI: 10.15252/Embr.201541476 |
0.304 |
|
| 2016 |
Zhang Y, An L, Yue F, Hardison RC. Jointly characterizing epigenetic dynamics across multiple human cell types. Nucleic Acids Research. PMID 27095202 DOI: 10.1093/Nar/Gkw278 |
0.513 |
|
| 2016 |
Than BL, Linnekamp JF, Starr TK, Largaespada DA, Rod A, Zhang Y, Bruner V, Abrahante J, Schumann A, Luczak T, Niemczyk A, O'Sullivan MG, Medema JP, Fijneman RJ, Meijer GA, et al. CFTR is a tumor suppressor gene in murine and human intestinal cancer. Oncogene. PMID 26751771 DOI: 10.1038/Onc.2015.483 |
0.304 |
|
| 2015 |
Park J, Zhang Y, Chen C, Dudley EG, Harvill ET. Diversity of secretion systems associated with virulence characteristics of the classical bordetellae. Microbiology (Reading, England). 161: 2328-40. PMID 26459829 DOI: 10.1099/Mic.0.000197 |
0.334 |
|
| 2014 |
Lee Y, Ghosh D, Hardison RC, Zhang Y. MRHMMs: multivariate regression hidden Markov models and the variantS. Bioinformatics (Oxford, England). 30: 1755-6. PMID 24558116 DOI: 10.1093/Bioinformatics/Btu070 |
0.545 |
|
| 2014 |
Zhu L, Zhang Y, Guo W, Xu XJ, Wang Q. De novo assembly and characterization of Sophora japonica transcriptome using RNA-seq. Biomed Research International. 2014: 750961. PMID 24516854 DOI: 10.1155/2014/750961 |
0.303 |
|
| 2014 |
Than BL, Goos JA, Sarver AL, O'Sullivan MG, Rod A, Starr TK, Fijneman RJ, Meijer GA, Zhao L, Zhang Y, Largaespada DA, Scott PM, Cormier RT. The role of KCNQ1 in mouse and human gastrointestinal cancers. Oncogene. 33: 3861-8. PMID 23975432 DOI: 10.1038/Onc.2013.350 |
0.327 |
|
| 2012 |
Park J, Zhang Y, Buboltz AM, Zhang X, Schuster SC, Ahuja U, Liu M, Miller JF, Sebaihia M, Bentley SD, Parkhill J, Harvill ET. Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens. Bmc Genomics. 13: 545. PMID 23051057 DOI: 10.1186/1471-2164-13-545 |
0.39 |
|
| 2012 |
Song G, Riemer C, Dickins B, Kim HL, Zhang L, Zhang Y, Hsu CH, Hardison RC, Nisc Comparative Sequencing Program, Green ED, Miller W. Revealing mammalian evolutionary relationships by comparative analysis of gene clusters. Genome Biology and Evolution. 4: 586-601. PMID 22454131 DOI: 10.1093/Gbe/Evs032 |
0.75 |
|
| 2012 |
Herz HM, Mohan M, Garrett AS, Miller C, Casto D, Zhang Y, Seidel C, Haug JS, Florens L, Washburn MP, Yamaguchi M, Shiekhattar R, Shilatifard A. Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila. Molecular and Cellular Biology. 32: 1683-93. PMID 22354997 DOI: 10.1128/Mcb.06503-11 |
0.328 |
|
| 2012 |
Zhang Y, Mager DL. Gene properties and chromatin state influence the accumulation of transposable elements in genes. Plos One. 7: e30158. PMID 22272293 DOI: 10.1371/journal.pone.0030158 |
0.353 |
|
| 2011 |
Song G, Hsu CH, Riemer C, Zhang Y, Kim HL, Hoffmann F, Zhang L, Hardison RC, Green ED, Miller W. Conversion events in gene clusters. Bmc Evolutionary Biology. 11: 226. PMID 21798034 DOI: 10.1186/1471-2148-11-226 |
0.735 |
|
| 2011 |
Wu W, Cheng Y, Keller CA, Ernst J, Kumar SA, Mishra T, Morrissey C, Dorman CM, Chen KB, Drautz D, Giardine B, Shibata Y, Song L, Pimkin M, Crawford GE, ... ... Zhang Y, et al. Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. Genome Research. 21: 1659-71. PMID 21795386 DOI: 10.1101/Gr.125088.111 |
0.749 |
|
| 2010 |
Hsu CH, Zhang Y, Hardison RC, Green ED, Miller W. An effective method for detecting gene conversion events in whole genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1281-97. PMID 20874409 DOI: 10.1089/Cmb.2010.0103 |
0.564 |
|
| 2010 |
Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, ... ... Zhang Y, et al. Complete Khoisan and Bantu genomes from southern Africa. Nature. 463: 943-7. PMID 20164927 DOI: 10.1038/Nature08795 |
0.744 |
|
| 2009 |
Cheng Y, Wu W, Kumar SA, Yu D, Deng W, Tripic T, King DC, Chen KB, Zhang Y, Drautz D, Giardine B, Schuster SC, Miller W, Chiaromonte F, Zhang Y, et al. Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Genome Research. 19: 2172-84. PMID 19887574 DOI: 10.1101/Gr.098921.109 |
0.813 |
|
| 2009 |
Zhang Y, Wu W, Cheng Y, King DC, Harris RS, Taylor J, Chiaromonte F, Hardison RC. Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1. Nucleic Acids Research. 37: 7024-38. PMID 19767611 DOI: 10.1093/Nar/Gkp747 |
0.772 |
|
| 2009 |
Maksakova IA, Zhang Y, Mager DL. Preferential epigenetic suppression of the autonomous MusD over the nonautonomous ETn mouse retrotransposons. Molecular and Cellular Biology. 29: 2456-68. PMID 19273603 DOI: 10.1128/MCB.01383-08 |
0.322 |
|
| 2009 |
Tripic T, Deng W, Cheng Y, Zhang Y, Vakoc CR, Gregory GD, Hardison RC, Blobel GA. SCL and associated proteins distinguish active from repressive GATA transcription factor complexes. Blood. 113: 2191-201. PMID 19011221 DOI: 10.1182/Blood-2008-07-169417 |
0.647 |
|
| 2008 |
Cheng Y, King DC, Dore LC, Zhang X, Zhou Y, Zhang Y, Dorman C, Abebe D, Kumar SA, Chiaromonte F, Miller W, Green RD, Weiss MJ, Hardison RC. Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. Genome Research. 18: 1896-905. PMID 18818370 DOI: 10.1101/Gr.083089.108 |
0.706 |
|
| 2008 |
Lu J, Luo L, Zhang Y. Distance conservation of transcription regulatory motifs in human promoters. Computational Biology and Chemistry. 32: 433-7. PMID 18722813 DOI: 10.1016/j.compbiolchem.2008.07.001 |
0.343 |
|
| 2007 |
Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Research. 17: 960-4. PMID 17568012 DOI: 10.1101/Gr.5578007 |
0.552 |
|
| 2007 |
King DC, Taylor J, Zhang Y, Cheng Y, Lawson HA, Martin J, Chiaromonte F, Miller W, Hardison RC. Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data. Genome Research. 17: 775-86. PMID 17567996 DOI: 10.1101/Gr.5592107 |
0.762 |
|
| 2007 |
Zhou Y, Cheng Y, Wang H, Zhang Y, King DC, Taylor J, Chiaromonte F, Dorman C, Miller W, Dore LC, Weiss MJ, Hardison RC. Validation of predicted erythroid cis-regulatory modules Blood Cells, Molecules, and Diseases. 38: 190. DOI: 10.1016/J.Bcmd.2006.10.158 |
0.731 |
|
| 2006 |
Wang H, Zhang Y, Cheng Y, Zhou Y, King DC, Taylor J, Chiaromonte F, Kasturi J, Petrykowska H, Gibb B, Dorman C, Miller W, Dore LC, Welch J, Weiss MJ, et al. Experimental validation of predicted mammalian erythroid cis-regulatory modules. Genome Research. 16: 1480-92. PMID 17038566 DOI: 10.1101/Gr.5353806 |
0.808 |
|
| 2005 |
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Galaxy: a platform for interactive large-scale genome analysis. Genome Research. 15: 1451-5. PMID 16169926 DOI: 10.1101/Gr.4086505 |
0.754 |
|
| 2005 |
Elnitski L, Giardine B, Shah P, Zhang Y, Riemer C, Weirauch M, Burhans R, Miller W, Hardison RC. Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Research. 33: D466-70. PMID 15608239 DOI: 10.1093/Nar/Gki045 |
0.79 |
|
| 2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Zhang Y, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.766 |
|
| 2003 |
Hardison RC, Chiaromonte F, Kolbe D, Wang H, Petrykowska H, Elnitski L, Yang S, Giardine B, Zhang Y, Riemer C, Schwartz S, Haussler D, Roskin KM, Weber RJ, Diekhans M, et al. Global predictions and tests of erythroid regulatory regions. Cold Spring Harbor Symposia On Quantitative Biology. 68: 335-44. PMID 15338635 DOI: 10.1101/Sqb.2003.68.335 |
0.732 |
|
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