Ruben Abagyan - Publications

Affiliations: 
Skaggs School of Pharmacy and Pharmaceutical Sciences University of California, San Diego, La Jolla, CA 

106 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 He X, Feng J, Yan S, Zhang Y, Zhong C, Liu Y, Shi D, Abagyan R, Xiang T, Zhang J. Biomimetic microbioreactor-supramolecular nanovesicles improve enzyme therapy of hepatic cancer. Nanomedicine : Nanotechnology, Biology, and Medicine. 102311. PMID 33011392 DOI: 10.1016/j.nano.2020.102311  0.36
2020 Hahn HJ, Abagyan R, Podust LM, Roy S, Ali I, Debnath A. HMG-CoA Reductase Inhibitors as Drug Leads against Naegleria fowleri. Acs Chemical Neuroscience. PMID 32881478 DOI: 10.1021/acschemneuro.0c00428  0.52
2020 Yang L, Zhang Y, Xie J, Zhong C, He D, Wang T, Li K, Li Y, Shi D, Abagyan R, Yang L, Zhang J. Biomimetic polysaccharide-cloaked lipidic nanovesicles/microassemblies for improving the enzymatic activity and prolonging the action time for hyperuricemia treatment. Nanoscale. PMID 32639489 DOI: 10.1039/d0nr02651d  0.36
2020 Gu J, Huang Y, Yan Z, He D, Zhang Y, Xu J, Li Y, Xie X, Xie J, Shi D, Abagyan R, Zhang J, Tan Q. Biomimetic Membrane-Structured Nanovesicles Carrying a Supramolecular Enzyme to Cure Lung Cancer. Acs Applied Materials & Interfaces. PMID 32544316 DOI: 10.1021/acsami.0c06207  0.36
2020 Huang Y, Gu J, Yan Z, Hu X, He D, Zhang Y, Li Y, Zhong C, Yang J, Shi D, Abagyan R, Tan Q, Zhang J. Cytomembrane-mimicking nanocarriers with a scaffold consisting of a CD44-targeted endogenous component for effective asparaginase supramolecule delivery. Nanoscale. PMID 32478361 DOI: 10.1039/d0nr02588g  0.36
2019 Meewan I, Zhang X, Roy S, Ballatore C, O'Donoghue AJ, Schooley RT, Abagyan R. Discovery of New Inhibitors of Hepatitis C Virus NS3/4A Protease and Its D168A Mutant. Acs Omega. 4: 16999-17008. PMID 31646247 DOI: 10.1021/acsomega.9b02491  0.52
2019 Zhang Y, Shi D, Abagyan R, Dai W, Dong M. Population Scale Retrospective Analysis Reveals Potential Risk of Cholestasis in Pregnant Women Taking Omeprazole, Lansoprazole, and Amoxicillin. Interdisciplinary Sciences, Computational Life Sciences. PMID 31106388 DOI: 10.1007/s12539-019-00335-w  0.36
2017 Sun N, Lu YJ, Chan FY, Du RL, Zheng YY, Zhang K, So LY, Abagyan R, Zhuo C, Leung YC, Wong KY. A Thiazole Orange Derivative Targeting the Bacterial Protein FtsZ Shows Potent Antibacterial Activity. Frontiers in Microbiology. 8: 855. PMID 28553278 DOI: 10.3389/fmicb.2017.00855  0.32
2016 Liu HC, Goldenberg A, Chen Y, Lun C, Wu W, Bush KT, Balac N, Rodriguez P, Abagyan R, Nigam SK. Analysis of Molecular Properties of Drugs Interacting with SLC22 Transporters OAT1, OAT3, OCT1, and OCT2: A Machine-Learning Approach. The Journal of Pharmacology and Experimental Therapeutics. PMID 27488918 DOI: 10.1124/jpet.116.232660  0.32
2016 Liu HC, Jamshidi N, Chen Y, Eraly SA, Cho SY, Bhatnagar V, Wu W, Bush KT, Abagyan R, Palsson BO, Nigam SK. Construction and Evaluation of an Organic Anion Transporter 1 (OAT1)-Centered Metabolic Network. The Journal of Biological Chemistry. PMID 27440044 DOI: 10.1074/jbc.M116.745216  0.32
2016 Quinti L, Casale M, Moniot S, Pais TF, Van Kanegan MJ, Kaltenbach LS, Pallos J, Lim RG, Naidu SD, Runne H, Meisel L, Rauf NA, Leyfer D, Maxwell MM, Saiah E, ... ... Abagyan R, et al. SIRT2- and NRF2-Targeting Thiazole-Containing Compound with Therapeutic Activity in Huntington's Disease Models. Cell Chemical Biology. PMID 27427231 DOI: 10.1016/j.chembiol.2016.05.015  0.32
2016 Wammer KH, Anderson KC, Erickson PR, Kliegman S, Moffatt ME, Berg SM, Heitzman JA, Pflug N, McNeill K, Martinovic-Weigelt D, Abagyan R, Cwiertny DM, Kolodziej EP. Environmental Photochemistry of Altrenogest: Photoisomerization to a Bioactive Product with Increased Environmental Persistence via Reversible Photohydration. Environmental Science & Technology. PMID 27356268 DOI: 10.1021/acs.est.6b02608  0.56
2016 Leach K, Gregory KJ, Kufareva I, Khajehali E, Cook AE, Abagyan R, Conigrave AD, Sexton PM, Christopoulos A. Towards a structural understanding of allosteric drugs at the human calcium-sensing receptor. Cell Research. PMID 27002221 DOI: 10.1038/cr.2016.36  0.32
2016 Ngo T, Kufareva I, Coleman JL, Graham RM, Abagyan R, Smith NJ. Identifying ligands at orphan GPCRs: current status using structure-based approaches. British Journal of Pharmacology. PMID 26837045 DOI: 10.1111/bph.13452  0.32
2016 Bennett BC, Purdy MD, Baker KA, Acharya C, McIntire WE, Stevens RC, Zhang Q, Harris AL, Abagyan R, Yeager M. An electrostatic mechanism for Ca(2+)-mediated regulation of gap junction channels. Nature Communications. 7: 8770. PMID 26753910 DOI: 10.1038/ncomms9770  0.32
2016 Dong M, Lam PCH, Orry A, Sexton PM, Christopoulos A, Abagyan R, Miller LJ. Use of cysteine trapping to map spatial approximations between residues contributing to the helix N-capping motif of secretin and distinct residues within each of the extracellular loops of its receptor Journal of Biological Chemistry. 291: 5172-5184. DOI: 10.1074/jbc.M115.706010  0.32
2015 Desai AJ, Lam PC, Orry A, Abagyan R, Christopoulos A, Sexton PM, Miller LJ. Molecular Mechanism of Action of Triazolobenzodiazepinone Agonists of the Type 1 Cholecystokinin Receptor. Possible Cooperativity across the Receptor Homodimeric Complex. Journal of Medicinal Chemistry. PMID 26654202 DOI: 10.1021/acs.jmedchem.5b01110  0.32
2015 Skowronska-Krawczyk D, Zhao L, Zhu J, Weinreb RN, Cao G, Luo J, Flagg K, Patel S, Wen C, Krupa M, Luo H, Ouyang H, Lin D, Wang W, Li G, ... ... Abagyan R, et al. P16INK4a Upregulation Mediated by SIX6 Defines Retinal Ganglion Cell Pathogenesis in Glaucoma. Molecular Cell. PMID 26365380 DOI: 10.1016/j.molcel.2015.07.027  0.32
2015 Wu W, Bush KT, Liu HC, Zhu C, Abagyan R, Nigam SK. Shared Ligands between Organic Anion Transporters (Oat1 and Oat6) and Odorant Receptors. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 26358290 DOI: 10.1124/dmd.115.065250  0.32
2015 Zhao L, Chen XJ, Zhu J, Xi YB, Yang X, Hu LD, Ouyang H, Patel SH, Jin X, Lin D, Wu F, Flagg K, Cai H, Li G, Cao G, ... ... Abagyan R, et al. Corrigendum: Lanosterol reverses protein aggregation in cataracts. Nature. PMID 26308894 DOI: 10.1038/nature15253  0.48
2015 Kufareva I, Handel TM, Abagyan R. Experiment-Guided Molecular Modeling of Protein-Protein Complexes Involving GPCRs. Methods in Molecular Biology (Clifton, N.J.). 1335: 295-311. PMID 26260608 DOI: 10.1007/978-1-4939-2914-6_19  0.32
2015 Zhao L, Chen XJ, Zhu J, Xi YB, Yang X, Hu LD, Ouyang H, Patel SH, Jin X, Lin D, Wu F, Flagg K, Cai H, Li G, Cao G, ... ... Abagyan R, et al. Lanosterol reverses protein aggregation in cataracts. Nature. PMID 26200341 DOI: 10.1038/nature14650  0.32
2015 Lo IC, Gupta V, Midde KK, Taupin V, Lopez-Sanchez I, Kufareva I, Abagyan R, Randazzo PA, Farquhar MG, Ghosh P. Activation of Gαi at the Golgi by GIV/Girdin imposes finiteness in Arf1 signaling. Developmental Cell. 33: 189-203. PMID 25865347 DOI: 10.1016/j.devcel.2015.02.009  0.32
2015 Qin L, Kufareva I, Holden LG, Wang C, Zheng Y, Zhao C, Fenalti G, Wu H, Han GW, Cherezov V, Abagyan R, Stevens RC, Handel TM. Structural biology. Crystal structure of the chemokine receptor CXCR4 in complex with a viral chemokine. Science (New York, N.Y.). 347: 1117-22. PMID 25612609 DOI: 10.1126/science.1261064  0.32
2015 Mayevu NM, Choe H, Abagyan R, Seong JY, Millar RP, Katz AA, Flanagan CA. Histidine(7.36(305)) in the conserved peptide receptor activation domain of the gonadotropin releasing hormone receptor couples peptide binding and receptor activation. Molecular and Cellular Endocrinology. 402: 95-106. PMID 25583361 DOI: 10.1016/j.mce.2015.01.008  0.32
2015 Dong M, Vattelana AM, Lam PC, Orry AJ, Abagyan R, Christopoulos A, Sexton PM, Haines DR, Miller LJ. Development of a highly selective allosteric antagonist radioligand for the type 1 cholecystokinin receptor and elucidation of its molecular basis of binding. Molecular Pharmacology. 87: 130-40. PMID 25319540 DOI: 10.1124/mol.114.095430  0.32
2015 Kufareva I, Abagyan R, Handel TM. Role of 3D structures in understanding, predicting, and designing molecular interactions in the chemokine receptor family Topics in Medicinal Chemistry. 14: 41-86. DOI: 10.1007/7355_2014_77  0.32
2014 Kufareva I, Stephens BS, Holden LG, Qin L, Zhao C, Kawamura T, Abagyan R, Handel TM. Stoichiometry and geometry of the CXC chemokine receptor 4 complex with CXC ligand 12: molecular modeling and experimental validation. Proceedings of the National Academy of Sciences of the United States of America. 111: E5363-72. PMID 25468967 DOI: 10.1073/pnas.1417037111  0.32
2014 Lin C, Ear J, Midde K, Lopez-Sanchez I, Aznar N, Garcia-Marcos M, Kufareva I, Abagyan R, Ghosh P. Structural basis for activation of trimeric Gi proteins by multiple growth factor receptors via GIV/Girdin. Molecular Biology of the Cell. 25: 3654-71. PMID 25187647 DOI: 10.1091/mbc.E14-05-0978  0.32
2014 Shmelkov E, Grigoryan A, Krachmarov C, Abagyan R, Cardozo T. Sequence-conserved and antibody-accessible sites in the V1V2 domain of HIV-1 gp120 envelope protein. Aids Research and Human Retroviruses. 30: 927-31. PMID 25051095 DOI: 10.1089/AID.2014.0034  0.32
2014 Wang Y, Chan FY, Sun N, Lui HK, So PK, Yan SC, Chan KF, Chiou J, Chen S, Abagyan R, Leung YC, Wong KY. Structure-based design, synthesis, and biological evaluation of isatin derivatives as potential glycosyltransferase inhibitors. Chemical Biology & Drug Design. 84: 685-96. PMID 24890564 DOI: 10.1111/cbdd.12361  0.32
2014 Sun N, Chan FY, Lu YJ, Neves MA, Lui HK, Wang Y, Chow KY, Chan KF, Yan SC, Leung YC, Abagyan R, Chan TH, Wong KY. Rational design of berberine-based FtsZ inhibitors with broad-spectrum antibacterial activity. Plos One. 9: e97514. PMID 24824618 DOI: 10.1371/journal.pone.0097514  0.56
2014 Gabrielsen M, Kurczab R, Siwek A, Wolak M, Ravna AW, Kristiansen K, Kufareva I, Abagyan R, Nowak G, Chilmonczyk Z, Sylte I, Bojarski AJ. Identification of novel serotonin transporter compounds by virtual screening. Journal of Chemical Information and Modeling. 54: 933-43. PMID 24521202 DOI: 10.1021/ci400742s  0.56
2014 Kawamura T, Stephens B, Qin L, Yin X, Dores MR, Smith TH, Grimsey N, Abagyan R, Trejo J, Kufareva I, Fuster MM, Salanga CL, Handel TM. A general method for site specific fluorescent labeling of recombinant chemokines. Plos One. 9: e81454. PMID 24489642 DOI: 10.1371/journal.pone.0081454  0.56
2014 Matos KS, da Cunha EF, Abagyan R, Ramalho TC. Computational evidence for the reactivation process of human acetylcholinesterase inhibited by carbamates. Combinatorial Chemistry & High Throughput Screening. 17: 554-64. PMID 24344993  0.56
2014 Kennedy DP, McRobb FM, Leonhardt SA, Purdy M, Figler H, Marshall MA, Chordia M, Figler R, Linden J, Abagyan R, Yeager M. The second extracellular loop of the adenosine A1 receptor mediates activity of allosteric enhancers. Molecular Pharmacology. 85: 301-9. PMID 24217444 DOI: 10.1124/mol.113.088682  0.32
2013 Schug TT, Abagyan R, Blumberg B, Collins TJ, Crews D, DeFur PL, Dickerson SM, Edwards TM, Gore AC, Guillette LJ, Hayes T, Heindel JJ, Moores A, Patisaul HB, Tal TL, et al. Designing Endocrine Disruption Out of the Next Generation of Chemicals. Green Chemistry : An International Journal and Green Chemistry Resource : Gc. 15: 181-198. PMID 25110461 DOI: 10.1039/C2GC35055F  0.56
2013 Chan FY, Sun N, Neves MA, Lam PC, Chung WH, Wong LK, Chow HY, Ma DL, Chan PH, Leung YC, Chan TH, Abagyan R, Wong KY. Identification of a new class of FtsZ inhibitors by structure-based design and in vitro screening. Journal of Chemical Information and Modeling. 53: 2131-40. PMID 23848971 DOI: 10.1021/ci400203f  0.56
2013 Harikumar KG, Cawston EE, Lam PC, Patil A, Orry A, Henke BR, Abagyan R, Christopoulos A, Sexton PM, Miller LJ. Molecular basis for benzodiazepine agonist action at the type 1 cholecystokinin receptor. The Journal of Biological Chemistry. 288: 21082-95. PMID 23754289 DOI: 10.1074/jbc.M113.480715  0.56
2013 Kufareva I, Stephens B, Gilliland CT, Wu B, Fenalti G, Hamel D, Stevens RC, Abagyan R, Handel TM. A novel approach to quantify G-protein-coupled receptor dimerization equilibrium using bioluminescence resonance energy transfer. Methods in Molecular Biology (Clifton, N.J.). 1013: 93-127. PMID 23625495 DOI: 10.1007/978-1-62703-426-5_7  0.56
2013 Gabrielsen M, WoÅ‚osewicz K, Zawadzka A, Kossakowski J, Nowak G, Wolak M, Stachowicz K, Siwek A, Ravna AW, Kufareva I, Kozerski L, Bednarek E, Sitkowski J, Bocian W, Abagyan R, et al. Synthesis, antidepressant evaluation and docking studies of long-chain alkylnitroquipazines as serotonin transporter inhibitors. Chemical Biology & Drug Design. 81: 695-706. PMID 23574807 DOI: 10.1111/cbdd.12116  0.56
2013 Katiyar S, Kufareva I, Behera R, Thomas SM, Ogata Y, Pollastri M, Abagyan R, Mensa-Wilmot K. Lapatinib-binding protein kinases in the African trypanosome: identification of cellular targets for kinase-directed chemical scaffolds. Plos One. 8: e56150. PMID 23437089 DOI: 10.1371/journal.pone.0056150  0.56
2012 Dong M, Xu X, Ball AM, Makhoul JA, Lam PC, Pinon DI, Orry A, Sexton PM, Abagyan R, Miller LJ. Mapping spatial approximations between the amino terminus of secretin and each of the extracellular loops of its receptor using cysteine trapping. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 5092-105. PMID 22964305 DOI: 10.1096/fj.12-212399  0.56
2012 Wein AN, Williams BN, Liu S, Ermolinsky B, Provenzano D, Abagyan R, Orry A, Leppla SH, Peredelchuk M. Small molecule inhibitors of Bacillus anthracis protective antigen proteolytic activation and oligomerization Journal of Medicinal Chemistry. 55: 7998-8006. PMID 22954387 DOI: 10.1021/jm300804e  0.56
2012 Leung CH, Zhong HJ, Yang H, Cheng Z, Chan DS, Ma VP, Abagyan R, Wong CY, Ma DL. A metal-based inhibitor of tumor necrosis factor-α. Angewandte Chemie (International Ed. in English). 51: 9010-4. PMID 22807261 DOI: 10.1002/anie.201202937  0.56
2012 Chan FY, Neves MA, Sun N, Tsang MW, Leung YC, Chan TH, Abagyan R, Wong KY. Validation of the AmpC β-lactamase binding site and identification of inhibitors with novel scaffolds. Journal of Chemical Information and Modeling. 52: 1367-75. PMID 22559726 DOI: 10.1021/ci300068m  0.56
2012 Tosh DK, Phan K, Gao ZG, Gakh AA, Xu F, Deflorian F, Abagyan R, Stevens RC, Jacobson KA, Katritch V. Optimization of adenosine 5'-carboxamide derivatives as adenosine receptor agonists using structure-based ligand design and fragment screening. Journal of Medicinal Chemistry. 55: 4297-308. PMID 22486652 DOI: 10.1021/jm300095s  0.56
2012 Cawston EE, Lam PC, Harikumar KG, Dong M, Ball AM, Augustine ML, Akgün E, Portoghese PS, Orry A, Abagyan R, Sexton PM, Miller LJ. Molecular basis for binding and subtype selectivity of 1,4-benzodiazepine antagonist ligands of the cholecystokinin receptor. The Journal of Biological Chemistry. 287: 18618-35. PMID 22467877 DOI: 10.1074/jbc.M111.335646  0.56
2012 JaroÅ„czyk M, WoÅ‚osewicz K, Gabrielsen M, Nowak G, Kufareva I, Mazurek AP, Ravna AW, Abagyan R, Bojarski AJ, Sylte I, Chilmonczyk Z. Synthesis, in vitro binding studies and docking of long-chain arylpiperazine nitroquipazine analogues, as potential serotonin transporter inhibitors. European Journal of Medicinal Chemistry. 49: 200-10. PMID 22309909 DOI: 10.1016/j.ejmech.2012.01.012  0.56
2011 Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R. Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment. Structure (London, England : 1993). 19: 1108-26. PMID 21827947 DOI: 10.1016/j.str.2011.05.012  0.56
2011 Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (London, England : 1993). 19: 930-44. PMID 21742260 DOI: 10.1016/j.str.2011.05.002  0.32
2011 Shimamura T, Shiroishi M, Weyand S, Tsujimoto H, Winter G, Katritch V, Abagyan R, Cherezov V, Liu W, Han GW, Kobayashi T, Stevens RC, Iwata S. Structure of the human histamine H1 receptor complex with doxepin. Nature. 475: 65-70. PMID 21697825 DOI: 10.1038/nature10236  0.56
2011 Dong M, Lam PC, Pinon DI, Hosohata K, Orry A, Sexton PM, Abagyan R, Miller LJ. Molecular basis of secretin docking to its intact receptor using multiple photolabile probes distributed throughout the pharmacophore. The Journal of Biological Chemistry. 286: 23888-99. PMID 21566140 DOI: 10.1074/jbc.M111.245969  0.56
2011 Miller LJ, Chen Q, Lam PC, Pinon DI, Sexton PM, Abagyan R, Dong M. Refinement of glucagon-like peptide 1 docking to its intact receptor using mid-region photolabile probes and molecular modeling. The Journal of Biological Chemistry. 286: 15895-907. PMID 21454562 DOI: 10.1074/jbc.M110.217901  0.56
2011 Leung CH, Chan DS, Yang H, Abagyan R, Lee SM, Zhu GY, Fong WF, Ma DL. A natural product-like inhibitor of NEDD8-activating enzyme. Chemical Communications (Cambridge, England). 47: 2511-3. PMID 21240405 DOI: 10.1039/c0cc04927a  0.56
2011 Totrov M, Jiang X, Kong XP, Cohen S, Krachmarov C, Salomon A, Williams C, Seaman MS, Abagyan R, Cardozo T, Gorny MK, Wang S, Lu S, Pinter A, Zolla-Pazner S. Corrigendum to Structure-guided design and immunological characterization of immunogens presenting the HIV-1 gp120 V3 loop on a CTB scaffold" [Virology 351 (2010) 513-523] Virology. 409: 360. DOI: 10.1016/j.virol.2010.11.003  0.32
2010 Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC. Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science (New York, N.Y.). 330: 1066-71. PMID 20929726 DOI: 10.1126/science.1194396  0.56
2010 Wacker D, Fenalti G, Brown MA, Katritch V, Abagyan R, Cherezov V, Stevens RC. Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography. Journal of the American Chemical Society. 132: 11443-5. PMID 20669948 DOI: 10.1021/ja105108q  0.56
2010 Odell LR, Howan D, Gordon CP, Robertson MJ, Chau N, Mariana A, Whiting AE, Abagyan R, Daniel JA, Gorgani NN, Robinson PJ, McCluskey A. The pthaladyns: GTP competitive inhibitors of dynamin I and II GTPase derived from virtual screening. Journal of Medicinal Chemistry. 53: 5267-80. PMID 20575553 DOI: 10.1021/jm100442u  0.32
2010 Bowers EM, Yan G, Mukherjee C, Orry A, Wang L, Holbert MA, Crump NT, Hazzalin CA, Liszczak G, Yuan H, Larocca C, Saldanha SA, Abagyan R, Sun Y, Meyers DJ, et al. Virtual ligand screening of the p300/CBP histone acetyltransferase: identification of a selective small molecule inhibitor. Chemistry & Biology. 17: 471-82. PMID 20534345 DOI: 10.1016/j.chembiol.2010.03.006  0.56
2010 Cheltsov AV, Aoyagi M, Aleshin A, Yu EC, Gilliland T, Zhai D, Bobkov AA, Reed JC, Liddington RC, Abagyan R. Vaccinia virus virulence factor N1L is a novel promising target for antiviral therapeutic intervention. Journal of Medicinal Chemistry. 53: 3899-906. PMID 20441222 DOI: 10.1021/jm901446n  0.56
2010 Chan DS, Lee HM, Yang F, Che CM, Wong CC, Abagyan R, Leung CH, Ma DL. Structure-based discovery of natural-product-like TNF-α inhibitors. Angewandte Chemie (International Ed. in English). 49: 2860-4. PMID 20235259 DOI: 10.1002/anie.200907360  0.56
2010 Dong M, Lam PC, Pinon DI, Orry A, Sexton PM, Abagyan R, Miller LJ. Secretin occupies a single protomer of the homodimeric secretin receptor complex: insights from photoaffinity labeling studies using dual sites of covalent attachment. The Journal of Biological Chemistry. 285: 9919-31. PMID 20100828 DOI: 10.1074/jbc.M109.089730  0.56
2010 Katritch V, Jaakola VP, Lane JR, Lin J, Ijzerman AP, Yeager M, Kufareva I, Stevens RC, Abagyan R. Structure-based discovery of novel chemotypes for adenosine A(2A) receptor antagonists. Journal of Medicinal Chemistry. 53: 1799-809. PMID 20095623 DOI: 10.1021/jm901647p  0.56
2010 Chow KH, Sun RW, Lam JB, Li CK, Xu A, Ma DL, Abagyan R, Wang Y, Che CM. A gold(III) porphyrin complex with antitumor properties targets the Wnt/beta-catenin pathway. Cancer Research. 70: 329-37. PMID 19996284 DOI: 10.1158/0008-5472.CAN-09-3324  0.56
2010 Reynolds KA, Katritch V, Abagyan R. Structure and Modeling of GPCRs: Implications for Drug Discovery Gpcr Molecular Pharmacology and Drug Targeting: Shifting Paradigms and New Directions. 385-433. DOI: 10.1002/9780470627327.ch15  0.56
2009 Wu P, Ma DL, Leung CH, Yan SC, Zhu N, Abagyan R, Che CM. Stabilization of G-quadruplex DNA with platinum(II) Schiff base complexes: luminescent probe and down-regulation of c-myc oncogene expression. Chemistry (Weinheim An Der Bergstrasse, Germany). 15: 13008-21. PMID 19876976 DOI: 10.1002/chem.200901943  0.56
2009 Bisson WH, Koch DC, O'Donnell EF, Khalil SM, Kerkvliet NI, Tanguay RL, Abagyan R, Kolluri SK. Modeling of the aryl hydrocarbon receptor (AhR) ligand binding domain and its utility in virtual ligand screening to predict new AhR ligands. Journal of Medicinal Chemistry. 52: 5635-41. PMID 19719119 DOI: 10.1021/jm900199u  0.32
2009 Simms J, Hall NE, Lam PH, Miller LJ, Christopoulos A, Abagyan R, Sexton PM. Homology modeling of GPCRs. Methods in Molecular Biology (Clifton, N.J.). 552: 97-113. PMID 19513644 DOI: 10.1007/978-1-60327-317-6_7  0.56
2009 Dong M, Lam PC, Pinon DI, Abagyan R, Miller LJ. Elucidation of the molecular basis of cholecystokinin Peptide docking to its receptor using site-specific intrinsic photoaffinity labeling and molecular modeling. Biochemistry. 48: 5303-12. PMID 19441839 DOI: 10.1021/bi9004705  0.56
2009 Gao F, Harikumar KG, Dong M, Lam PC, Sexton PM, Christopoulos A, Bordner A, Abagyan R, Miller LJ. Functional importance of a structurally distinct homodimeric complex of the family B G protein-coupled secretin receptor. Molecular Pharmacology. 76: 264-74. PMID 19429716 DOI: 10.1124/mol.109.055756  0.32
2009 Katritch V, Reynolds KA, Cherezov V, Hanson MA, Roth CB, Yeager M, Abagyan R. Analysis of full and partial agonists binding to beta2-adrenergic receptor suggests a role of transmembrane helix V in agonist-specific conformational changes. Journal of Molecular Recognition : Jmr. 22: 307-18. PMID 19353579 DOI: 10.1002/jmr.949  0.32
2009 Wu YW, Goody RS, Abagyan R, Alexandrov K. Structure of the disordered C terminus of Rab7 GTPase induced by binding to the Rab geranylgeranyl transferase catalytic complex reveals the mechanism of Rab prenylation. The Journal of Biological Chemistry. 284: 13185-92. PMID 19240028 DOI: 10.1074/jbc.M900579200  0.44
2009 Reynolds KA, Katritch V, Abagyan R. Identifying conformational changes of the beta(2) adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators. Journal of Computer-Aided Molecular Design. 23: 273-88. PMID 19148767 DOI: 10.1007/s10822-008-9257-9  0.32
2008 Dong M, Lam PC, Pinon DI, Sexton PM, Abagyan R, Miller LJ. Spatial approximation between secretin residue five and the third extracellular loop of its receptor provides new insight into the molecular basis of natural agonist binding. Molecular Pharmacology. 74: 413-22. PMID 18467541 DOI: 10.1124/mol.108.047209  0.32
2008 Ma DL, Lai TS, Chan FY, Chung WH, Abagyan R, Leung YC, Wong KY. Discovery of a drug-like G-quadruplex binding ligand by high-throughput docking. Chemmedchem. 3: 881-4. PMID 18383062 DOI: 10.1002/cmdc.200700342  0.32
2007 Hayashi T, Mo JH, Gong X, Rossetto C, Jang A, Beck L, Elliott GI, Kufareva I, Abagyan R, Broide DH, Lee J, Raz E. 3-Hydroxyanthranilic acid inhibits PDK1 activation and suppresses experimental asthma by inducing T cell apoptosis. Proceedings of the National Academy of Sciences of the United States of America. 104: 18619-24. PMID 18003900 DOI: 10.1073/pnas.0709261104  0.32
2007 Katritch V, Byrd CM, Tseitin V, Dai D, Raush E, Totrov M, Abagyan R, Jordan R, Hruby DE. Discovery of small molecule inhibitors of ubiquitin-like poxvirus proteinase I7L using homology modeling and covalent docking approaches. Journal of Computer-Aided Molecular Design. 21: 549-58. PMID 17960327 DOI: 10.1007/s10822-007-9138-7  0.32
2007 Szewczuk LM, Saldanha SA, Ganguly S, Bowers EM, Javoroncov M, Karanam B, Culhane JC, Holbert MA, Klein DC, Abagyan R, Cole PA. De novo discovery of serotonin N-acetyltransferase inhibitors. Journal of Medicinal Chemistry. 50: 5330-8. PMID 17924613 DOI: 10.1021/jm0706463  0.32
2007 Chrencik JE, Brooun A, Recht MI, Nicola G, Davis LK, Abagyan R, Widmer H, Pasquale EB, Kuhn P. Three-dimensional structure of the EphB2 receptor in complex with an antagonistic peptide reveals a novel mode of inhibition. The Journal of Biological Chemistry. 282: 36505-13. PMID 17897949 DOI: 10.1074/jbc.M706340200  0.32
2007 Bisson WH, Cheltsov AV, Bruey-Sedano N, Lin B, Chen J, Goldberger N, May LT, Christopoulos A, Dalton JT, Sexton PM, Zhang XK, Abagyan R. Discovery of antiandrogen activity of nonsteroidal scaffolds of marketed drugs. Proceedings of the National Academy of Sciences of the United States of America. 104: 11927-32. PMID 17606915 DOI: 10.1073/pnas.0609752104  0.32
2007 Outeiro TF, Kontopoulos E, Altmann SM, Kufareva I, Strathearn KE, Amore AM, Volk CB, Maxwell MM, Rochet JC, McLean PJ, Young AB, Abagyan R, Feany MB, Hyman BT, Kazantsev AG. Sirtuin 2 inhibitors rescue alpha-synuclein-mediated toxicity in models of Parkinson's disease. Science (New York, N.Y.). 317: 516-9. PMID 17588900 DOI: 10.1126/science.1143780  0.32
2007 Kovacs JA, Baker KA, Altenberg GA, Abagyan R, Yeager M. Molecular modeling and mutagenesis of gap junction channels. Progress in Biophysics and Molecular Biology. 94: 15-28. PMID 17524457 DOI: 10.1016/j.pbiomolbio.2007.03.013  0.32
2007 Nicola G, Smith CA, Lucumi E, Kuo MR, Karagyozov L, Fidock DA, Sacchettini JC, Abagyan R. Discovery of novel inhibitors targeting enoyl-acyl carrier protein reductase in Plasmodium falciparum by structure-based virtual screening. Biochemical and Biophysical Research Communications. 358: 686-91. PMID 17509532 DOI: 10.1016/j.bbrc.2007.04.113  0.32
2006 Malinina L, Malakhova ML, Kanack AT, Lu M, Abagyan R, Brown RE, Patel DJ. The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biology. 4: e362. PMID 17105344 DOI: 10.1371/journal.pbio.0040362  0.32
2006 Altmann SM, Muryshev A, Fossale E, Maxwell MM, Norflus FN, Fox J, Hersch SM, Young AB, MacDonald ME, Abagyan R, Kazantsev AG. Discovery of bioactive small-molecule inhibitor of poly adp-ribose polymerase: implications for energy-deficient cells. Chemistry & Biology. 13: 765-70. PMID 16873024 DOI: 10.1016/j.chembiol.2006.05.012  0.32
2005 Cardozo T, Abagyan R. Druggability of SCF ubiquitin ligase-protein interfaces. Methods in Enzymology. 399: 634-53. PMID 16338386 DOI: 10.1016/S0076-6879(05)99042-3  0.32
2005 Kovacs JA, Cavasotto CN, Abagyan R. Conformational sampling of protein flexibility in generalized coordinates: Application to ligand docking Journal of Computational and Theoretical Nanoscience. 2: 354-361. DOI: 10.1166/jctn.2005.204  0.32
2004 Cavasotto CN, Liu G, James SY, Hobbs PD, Peterson VJ, Bhattacharya AA, Kolluri SK, Zhang XK, Leid M, Abagyan R, Liddington RC, Dawson MI. Determinants of retinoid X receptor transcriptional antagonism. Journal of Medicinal Chemistry. 47: 4360-72. PMID 15317450 DOI: 10.1021/jm030651g  0.32
2004 Kovacs JA, Chacón P, Abagyan R. Predictions of protein flexibility: first-order measures. Proteins. 56: 661-8. PMID 15281119 DOI: 10.1002/prot.20151  0.32
2004 Hill TA, Odell LR, Quan A, Abagyan R, Ferguson G, Robinson PJ, McCluskey A. Long chain amines and long chain ammonium salts as novel inhibitors of dynamin GTPase activity. Bioorganic & Medicinal Chemistry Letters. 14: 3275-8. PMID 15149689 DOI: 10.1016/j.bmcl.2004.03.096  0.32
2002 Volkman SK, Hartl DL, Wirth DF, Nielsen KM, Choi M, Batalov S, Zhou Y, Plouffe D, Le Roch KG, Abagyan R, Winzeler EA. Excess polymorphisms in genes for membrane proteins in Plasmodium falciparum. Science (New York, N.Y.). 298: 216-8. PMID 12364807 DOI: 10.1126/science.1075642  0.32
2000 Filikov AV, Mohan V, Vickers TA, Griffey RH, Cook PD, Abagyan RA, James TL. Identification of ligands for RNA targets via structure-based virtual screening: HIV-1 TAR. Journal of Computer-Aided Molecular Design. 14: 593-610. PMID 10921774 DOI: 10.1023/A:1008121029716  0.56
2000 Kelly PD, Chu F, Woods IG, Ngo-Hazelett P, Cardozo T, Huang H, Kimm F, Liao L, Yan YL, Zhou Y, Johnson SL, Abagyan R, Schier AF, Postlethwait JH, Talbot WS. Genetic linkage mapping of zebrafish genes and ESTs. Genome Research. 10: 558-67. PMID 10779498 DOI: 10.1101/gr.10.4.558  0.32
2000 Jin E, Katritch V, Olson WK, Kharatisvili M, Abagyan R, Pilch DS. Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition. Journal of Molecular Biology. 298: 95-110. PMID 10756107 DOI: 10.1006/jmbi.2000.3639  0.32
2000 Tomko RP, Johansson CB, Totrov M, Abagyan R, Frisén J, Philipson L. Expression of the adenovirus receptor and its interaction with the fiber knob. Experimental Cell Research. 255: 47-55. PMID 10666333 DOI: 10.1006/excr.1999.4761  0.32
2000 Cardozo T, Batalov S, Abagyan R. Estimating local backbone structural deviation in homology models Computers and Chemistry. 24: 13-21. PMID 10642877  0.32
1999 Gates MA, Kim L, Egan ES, Cardozo T, Sirotkin HI, Dougan ST, Lashkari D, Abagyan R, Schier AF, Talbot WS. A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Research. 9: 334-47. PMID 10207156  0.32
1998 Srivastava S, Osten P, Vilim FS, Khatri L, Inman G, States B, Daly C, DeSouza S, Abagyan R, Valtschanoff JG, Weinberg RJ, Ziff EB. Novel anchorage of GluR2/3 to the postsynaptic density by the AMPA receptor-binding protein ABP. Neuron. 21: 581-91. PMID 9768844 DOI: 10.1016/S0896-6273(00)80568-1  0.32
1998 Isakoff SJ, Cardozo T, Andreev J, Li Z, Ferguson KM, Abagyan R, Lemmon MA, Aronheim A, Skolnik EY. Identification and analysis of PH domain-containing targets of phosphatidylinositol 3-kinase using a novel in vivo assay in yeast. The Embo Journal. 17: 5374-87. PMID 9736615 DOI: 10.1093/emboj/17.18.5374  0.32
1998 Cardozo TJ, Abagyan R. Molecular modeling of the domain shared between CED-4 and its mammalian homologue Apaf-1: A structural relationship to the G-proteins Journal of Molecular Modeling. 4: 83-93.  0.32
1996 Goodman AR, Cardozo T, Abagyan R, Altmeyer A, Wisniewski HG, Vilček J. Long pentraxins: An emerging group of proteins with diverse functions Cytokine and Growth Factor Reviews. 7: 191-202. PMID 8899296 DOI: 10.1016/1359-6101(96)00019-6  0.32
1996 Chalikian TV, Totrov M, Abagyan R, Breslauer KJ. The hydration of globular proteins as derived from volume and compressibility measurements: cross correlating thermodynamic and structural data. Journal of Molecular Biology. 260: 588-603. PMID 8759322 DOI: 10.1006/jmbi.1996.0423  0.32
1996 Strynadka NC, Eisenstein M, Katchalski-Katzir E, Shoichet BK, Kuntz ID, Abagyan R, Totrov M, Janin J, Cherfils J, Zimmerman F, Olson A, Duncan B, Rao M, Jackson R, Sternberg M, et al. Molecular docking programs successfully predict the binding of a beta-lactamase inhibitory protein to TEM-1 beta-lactamase. Nature Structural Biology. 3: 233-9. PMID 8605624 DOI: 10.1038/nsb0396-233  0.32
1995 Cardozo T, Totrov M, Abagyan R. Homology modeling by the ICM method Proteins: Structure, Function and Genetics. 23: 403-414. PMID 8710833 DOI: 10.1002/prot.340230314  0.32
1995 Houbrechts A, Moreau B, Abagyan R, Mainfroid V, Preaux G, Lamproye A, Poncin A, Goormaghtigh E, Ruysschaert JM, Martial JA, Goraj K. Second-generation octarellins: Two new de novo (β/α)8 polypeptides designed for investigating the influence of β-residue packing on the α/β-barrel structure stability Protein Engineering. 8: 249-259. PMID 7479687 DOI: 10.1093/protein/8.3.249  0.32
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