| Year |
Citation |
Score |
| 2022 |
Kuzdzal-Fick JJ, Moreno A, Broersma CME, Cooper TF, Ostrowski EA. From individual behaviors to collective outcomes: fruiting body formation in Dictyostelium as a group-level phenotype. Evolution; International Journal of Organic Evolution. PMID 36637886 DOI: 10.1093/evolut/qpac038 |
0.695 |
|
| 2022 |
Smith CE, Smith ANH, Cooper TF, Moore FB. Fitness of evolving bacterial populations is contingent on deep and shallow history but only shallow history creates predictable patterns. Proceedings. Biological Sciences. 289: 20221292. PMID 36100026 DOI: 10.1098/rspb.2022.1292 |
0.642 |
|
| 2021 |
Phillips KN, Cooper TF. The cost of evolved constitutive gene expression is usually, but not always, maintained during evolution of generalist populations. Ecology and Evolution. 11: 12497-12507. PMID 34594515 DOI: 10.1002/ece3.7994 |
0.576 |
|
| 2021 |
Lai HY, Cooper TF. Dynamics of bacterial adaptation. Biochemical Society Transactions. PMID 33843990 DOI: 10.1042/BST20200885 |
0.473 |
|
| 2021 |
Karkare K, Lai HY, Azevedo RBR, Cooper TF. Historical contingency causes divergence in adaptive expression of the lac operon. Molecular Biology and Evolution. PMID 33744956 DOI: 10.1093/molbev/msab077 |
0.583 |
|
| 2020 |
Cesar S, Anjur-Dietrich M, Yu B, Li E, Rojas E, Neff N, Cooper TF, Huang KC. Bacterial Evolution in High-Osmolarity Environments. Mbio. 11. PMID 32753494 DOI: 10.1128/Mbio.01191-20 |
0.337 |
|
| 2020 |
Wang Y, Cooper TF. Environment dependent costs and benefits of recombination in independently evolved populations of Escherichia coli. Evolution; International Journal of Organic Evolution. PMID 32281651 DOI: 10.1111/evo.13974 |
0.354 |
|
| 2019 |
Coombes D, Moir JWB, Poole AM, Cooper TF, Dobson RCJ. The fitness challenge of studying molecular adaptation. Biochemical Society Transactions. PMID 31642877 DOI: 10.1042/BST20180626 |
0.33 |
|
| 2019 |
Hall AE, Karkare K, Cooper VS, Bank C, Cooper TF, Moore FB. Environment changes epistasis to alter trade-offs along alternative evolutionary paths. Evolution; International Journal of Organic Evolution. PMID 31418459 DOI: 10.1111/Evo.13825 |
0.77 |
|
| 2017 |
Peng F, Widmann S, Wünsche A, Duan K, Donovan KA, Dobson RCJ, Lenski RE, Cooper TF. Effects of beneficial mutations in pykF gene vary over time and across replicate populations in a long-term experiment with bacteria. Molecular Biology and Evolution. PMID 29069429 DOI: 10.1093/Molbev/Msx279 |
0.731 |
|
| 2017 |
Wünsche A, Dinh DM, Satterwhite RS, Arenas CD, Stoebel DM, Cooper TF. Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory. Nature Ecology & Evolution. 1: 61. PMID 28812657 DOI: 10.1038/S41559-016-0061 |
0.581 |
|
| 2016 |
Wang Y, Diaz Arenas C, Stoebel DM, Flynn K, Knapp E, Dillon MM, Wünsche A, Hatcher PJ, Moore FB, Cooper VS, Cooper TF. Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness. Proceedings of the National Academy of Sciences of the United States of America. 113: 5047-52. PMID 27091964 DOI: 10.1073/Pnas.1524988113 |
0.763 |
|
| 2016 |
Phillips KN, Castillo G, Wünsche A, Cooper TF. Adaptation of Escherichia coli to glucose promotes evolvability in lactose. Evolution; International Journal of Organic Evolution. PMID 26748670 DOI: 10.1111/evo.12849 |
0.36 |
|
| 2015 |
Stieglitz E, Taylor-Weiner AN, Chang TY, Gelston LC, Wang YD, Mazor T, Esquivel E, Yu A, Seepo S, Olsen SR, Rosenberg M, Archambeault SL, Abusin G, Beckman K, Brown PA, ... ... Cooper T, et al. The genomic landscape of juvenile myelomonocytic leukemia. Nature Genetics. PMID 26457647 DOI: 10.1038/Ng.3400 |
0.325 |
|
| 2015 |
Satterwhite RS, Cooper TF. Constraints on adaptation of Escherichia coli to mixed-resource environments increase over time. Evolution; International Journal of Organic Evolution. PMID 26103008 DOI: 10.1111/evo.12710 |
0.31 |
|
| 2014 |
Pedrotti S, Cooper TA. In Brief: (mis)splicing in disease. The Journal of Pathology. 233: 1-3. PMID 24615176 DOI: 10.1002/Path.4337 |
0.308 |
|
| 2014 |
Stieglitz E, Liu YL, Emanuel PD, Castleberry RP, Cooper TM, Shannon KM, Loh ML. Mutations in GATA2 are rare in juvenile myelomonocytic leukemia. Blood. 123: 1426-7. PMID 24578498 DOI: 10.1182/Blood-2013-11-531079 |
0.408 |
|
| 2013 |
Le Gac M, Cooper TF, Cruveiller S, Médigue C, Schneider D. Evolutionary history and genetic parallelism affect correlated responses to evolution. Molecular Ecology. 22: 3292-3303. PMID 24624420 DOI: 10.1111/mec.12312 |
0.495 |
|
| 2013 |
Flynn KM, Cooper TF, Moore FB, Cooper VS. The environment affects epistatic interactions to alter the topology of an empirical fitness landscape. Plos Genetics. 9: e1003426. PMID 23593024 DOI: 10.1371/Journal.Pgen.1003426 |
0.763 |
|
| 2013 |
Díaz Arenas C, Cooper TF. Mechanisms and selection of evolvability: experimental evidence. Fems Microbiology Reviews. 37: 572-82. PMID 23078278 DOI: 10.1111/1574-6976.12008 |
0.449 |
|
| 2013 |
Wang Y, Arenas CD, Stoebel DM, Cooper TF. Genetic background affects epistatic interactions between two beneficial mutations. Biology Letters. 9: 20120328. PMID 22896270 DOI: 10.1098/Rsbl.2012.0328 |
0.566 |
|
| 2012 |
Quan S, Ray JC, Kwota Z, Duong T, Balázsi G, Cooper TF, Monds RD. Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli. Plos Genetics. 8: e1002444. PMID 22253602 DOI: 10.1371/Journal.Pgen.1002444 |
0.565 |
|
| 2012 |
Zhang W, Sehgal V, Dinh DM, Azevedo RB, Cooper TF, Azencott R. Estimation of the rate and effect of new beneficial mutations in asexual populations. Theoretical Population Biology. 81: 168-78. PMID 22155293 DOI: 10.1016/j.tpb.2011.11.005 |
0.462 |
|
| 2012 |
Gallet R, Cooper TF, Elena SF, Lenormand T. Measuring selection coefficients below 10(-3): method, questions, and prospects. Genetics. 190: 175-86. PMID 22042578 DOI: 10.1534/Genetics.111.133454 |
0.465 |
|
| 2011 |
de Visser JA, Cooper TF, Elena SF. The causes of epistasis. Proceedings. Biological Sciences / the Royal Society. 278: 3617-24. PMID 21976687 DOI: 10.1098/rspb.2011.1537 |
0.462 |
|
| 2011 |
Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF. Negative epistasis between beneficial mutations in an evolving bacterial population. Science (New York, N.Y.). 332: 1193-6. PMID 21636772 DOI: 10.1126/Science.1203801 |
0.72 |
|
| 2011 |
Woods RJ, Barrick JE, Cooper TF, Shrestha U, Kauth MR, Lenski RE. Second-order selection for evolvability in a large Escherichia coli population. Science (New York, N.Y.). 331: 1433-6. PMID 21415350 DOI: 10.1126/Science.1198914 |
0.758 |
|
| 2011 |
McDonald MJ, Cooper TF, Beaumont HJ, Rainey PB. The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens. Biology Letters. 7: 98-100. PMID 20659918 DOI: 10.1098/Rsbl.2010.0547 |
0.425 |
|
| 2010 |
Cooper TF, Lenski RE. Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations. Bmc Evolutionary Biology. 10: 11. PMID 20070898 DOI: 10.1186/1471-2148-10-11 |
0.555 |
|
| 2009 |
Stanek MT, Cooper TF, Lenski RE. Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli. Bmc Evolutionary Biology. 9: 302. PMID 20040094 DOI: 10.1186/1471-2148-9-302 |
0.696 |
|
| 2008 |
Cooper TF, Remold SK, Lenski RE, Schneider D. Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli. Plos Genetics. 4: e35. PMID 18282111 DOI: 10.1371/Journal.Pgen.0040035 |
0.754 |
|
| 2007 |
Cooper TF. Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli. Plos Biology. 5: e225. PMID 17713986 DOI: 10.1371/journal.pbio.0050225 |
0.537 |
|
| 2007 |
Cooper TF, Ostrowski EA, Travisano M. A negative relationship between mutation pleiotropy and fitness effect in yeast. Evolution; International Journal of Organic Evolution. 61: 1495-9. PMID 17542856 DOI: 10.1111/J.1558-5646.2007.00109.X |
0.751 |
|
| 2006 |
Cooper TF, Morby AP, Gunn A, Schneider D. Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli. Bmc Genomics. 7: 237. PMID 16982007 DOI: 10.1186/1471-2164-7-237 |
0.39 |
|
| 2005 |
Cooper TF, Lenski RE, Elena SF. Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex. Proceedings. Biological Sciences / the Royal Society. 272: 311-7. PMID 15705557 DOI: 10.1098/Rspb.2004.2975 |
0.639 |
|
| 2003 |
Cooper TF, Rozen DE, Lenski RE. Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli. Proceedings of the National Academy of Sciences of the United States of America. 100: 1072-7. PMID 12538876 DOI: 10.1073/Pnas.0334340100 |
0.736 |
|
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