Christoph Carl Adami - Publications

Affiliations: 
1995-2004 Computation and Neural Systems California Institute of Technology, Pasadena, CA 
 2000-2004 Quantum Computing Jet Propulsion Lanoratory 
 2004-2011 Applied Life Sciences Keck Graduate Institute, Claremont, CA, United States 
 2011- Biomedical Physical Sciences Michigan State University, East Lansing, MI 
Area:
Darwinian evolution, studied theoretically, experimentally, and computationally
Website:
http://adamilab.mmg.msu.edu/chris-adami/

100 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hintze A, Adami C. Detecting Information Relays in Deep Neural Networks. Entropy (Basel, Switzerland). 25. PMID 36981289 DOI: 10.3390/e25030401  0.649
2020 Tehrani-Saleh A, Adami C. Can Transfer Entropy Infer Information Flow in Neuronal Circuits for Cognitive Processing? Entropy (Basel, Switzerland). 22. PMID 33286159 DOI: 10.3390/e22040385  0.73
2020 Sydykova DK, LaBar T, Adami C, Wilke CO. Moderate Amounts of Epistasis are Not Evolutionarily Stable in Small Populations. Journal of Molecular Evolution. PMID 32350572 DOI: 10.1007/S00239-020-09942-4  0.792
2020 Pontes AC, Mobley RB, Ofria C, Adami C, Dyer FC. The Evolutionary Origin of Associative Learning. The American Naturalist. 195: E1-E19. PMID 31868538 DOI: 10.1086/706252  0.734
2019 Franklin J, LaBar T, Adami C. Mapping the Peaks: Fitness Landscapes of the Fittest and the Flattest. Artificial Life. 25: 250-262. PMID 31397601 DOI: 10.1162/Artl_A_00296  0.786
2019 C G N, LaBar T, Hintze A, Adami C. Origin of life in a digital microcosm. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 375. PMID 29133448 DOI: 10.1098/Rsta.2016.0350  0.772
2018 Adami C, Hintze A. Thermodynamics of evolutionary games. Physical Review E. 97: 62136. PMID 30011573 DOI: 10.1103/Physreve.97.062136  0.673
2017 LaBar T, Adami C. Evolution of drift robustness in small populations. Nature Communications. 8: 1012-1012. PMID 29044114 DOI: 10.1038/S41467-017-01003-7  0.792
2017 Chapman SD, Adami C, Wilke CO, B Kc D. The evolution of logic circuits for the purpose of protein contact map prediction. Peerj. 5: e3139. PMID 28439455 DOI: 10.7717/Peerj.3139  0.48
2016 Gupta A, Adami C. Shared Information between Residues Is Sufficient to Detect Pairwise Epistasis in a Protein. Plos Genetics. 12: e1006471. PMID 28005913 DOI: 10.1371/Journal.Pgen.1006471  0.449
2016 LaBar T, Adami C. Different Evolutionary Paths to Complexity for Small and Large Populations of Digital Organisms. Plos Computational Biology. 12: e1005066. PMID 27923053 DOI: 10.1371/Journal.Pcbi.1005066  0.797
2016 Patra B, Kon Y, Yadav G, Sevold AW, Frumkin JP, Vallabhajosyula RR, Hintze A, Østman B, Schossau J, Bhan A, Marzolf B, Tamashiro JK, Kaur A, Baliga NS, Grayhack EJ, ... Adami C, et al. A genome wide dosage suppressor network reveals genomic robustness. Nucleic Acids Research. PMID 27899637 DOI: 10.1093/Nar/Gkw1148  0.778
2016 Adami C, Schossau J, Hintze A. The reasonable effectiveness of agent-based simulations in evolutionary game theory: Reply to comments on "Evolutionary game theory using agent-based methods". Physics of Life Reviews. 19: 38-42. PMID 27876345 DOI: 10.1016/J.Plrev.2016.11.005  0.757
2016 LaBar T, Hintze A, Adami C. Evolvability Tradeoffs in Emergent Digital Replicators. Artificial Life. 22: 483-498. PMID 27824499 DOI: 10.1162/Artl_A_00214  0.777
2016 Adami C, Schossau J, Hintze A. Evolutionary game theory using agent-based methods. Physics of Life Reviews. 19: 1-26. PMID 27617905 DOI: 10.1016/J.Plrev.2016.08.015  0.777
2016 Gupta A, LaBar T, Miyagi M, Adami C. Evolution of Genome Size in Asexual Digital Organisms. Scientific Reports. 6: 25786. PMID 27181837 DOI: 10.1038/Srep25786  0.788
2016 Olson RS, Knoester DB, Adami C. Evolution of Swarming Behavior Is Shaped by How Predators Attack. Artificial Life. 1-20. PMID 27139941 DOI: 10.1162/Artl_A_00206  0.784
2016 Gupta A, Adami C. Strong Selection Significantly Increases Epistatic Interactions in the Long-Term Evolution of a Protein. Plos Genetics. 12: e1005960. PMID 27028897 DOI: 10.1371/Journal.Pgen.1005960  0.508
2016 Adami C, Moore J, Dyer F, Hintze A, Olson R. Exploring the coevolution of predator and prey morphology and behavior Artificial Life. 250-257. DOI: 10.7551/978-0-262-33936-0-Ch045  0.761
2016 Schossau J, Adami C, Hintze A. Information-theoretic neuro-correlates boost evolution of cognitive systems Entropy. 18. DOI: 10.3390/E18010006  0.675
2016 Chaumont N, Adami C. Evolution of sustained foraging in three-dimensional environments with physics Genetic Programming and Evolvable Machines. 17: 359-390. DOI: 10.1007/S10710-016-9270-Z  0.313
2015 Olson RS, Haley PB, Dyer FC, Adami C. Exploring the evolution of a trade-off between vigilance and foraging in group-living organisms. Royal Society Open Science. 2: 150135. PMID 26473039 DOI: 10.1098/Rsos.150135  0.647
2015 Gupta A, Brown CT, Zheng YH, Adami C. Differentially-Expressed Pseudogenes in HIV-1 Infection. Viruses. 7: 5191-205. PMID 26426037 DOI: 10.3390/V7102869  0.424
2015 Clifford J, Adami C. Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively. Physical Biology. 12: 056004. PMID 26331781 DOI: 10.1088/1478-3975/12/5/056004  0.755
2015 Hintze A, Adami C. Punishment in public goods games leads to meta-stable phase transitions and hysteresis. Physical Biology. 12: 046005. PMID 26031571 DOI: 10.1088/1478-3975/12/4/046005  0.661
2015 Hintze A, Olson RS, Adami C, Hertwig R. Risk sensitivity as an evolutionary adaptation. Scientific Reports. 5: 8242. PMID 25649757 DOI: 10.1038/Srep08242  0.763
2015 Olson RS, Haley PB, Dyer FC, Adami C. Exploring the evolution of a trade-off between vigilance and foraging in group-living organisms Royal Society Open Science. 2. DOI: 10.1098/rsos.150135  0.604
2015 Hintze A, Adami C. Punishment in public goods games leads to meta-stable phase transitions and hysteresis Physical Biology. 12. DOI: 10.1088/1478-3975/12/4/046005  0.685
2015 Adami C. Information-Theoretic Considerations Concerning the Origin of Life Origins of Life and Evolution of Biospheres. DOI: 10.1007/S11084-015-9439-0  0.308
2014 Albantakis L, Hintze A, Koch C, Adami C, Tononi G. Evolution of integrated causal structures in animats exposed to environments of increasing complexity. Plos Computational Biology. 10: e1003966. PMID 25521484 DOI: 10.1371/Journal.Pcbi.1003966  0.692
2014 Østman B, Lin R, Adami C. Trade-offs drive resource specialization and the gradual establishment of ecotypes. Bmc Evolutionary Biology. 14: 113. PMID 24885598 DOI: 10.1186/1471-2148-14-113  0.314
2014 Haley P, Olson R, Dyer F, Adami C. Exploring Conditions That Select for the Evolution of Cooperative Group Foraging Artificial Life. 310-311. DOI: 10.7551/978-0-262-32621-6-Ch050  0.634
2014 Johnson A, Strauss E, Pickett R, Adami C, Dworkin I, Goldsby H. More Bang For Your Buck: Quorum-Sensing Capabilities Improve the Efficacy of Suicidal Altruism Artificial Life. 120-128. DOI: 10.7551/978-0-262-32621-6-Ch020  0.665
2014 Adami C, Hintze A. Corrigendum: Evolutionary instability of zero-determinant strategies demonstrates that winning is not everything Nature Communications. 5: 3764. DOI: 10.1038/Ncomms4764  0.664
2013 Adami C, Hintze A. Evolutionary instability of zero-determinant strategies demonstrates that winning is not everything. Nature Communications. 4: 2193. PMID 23903782 DOI: 10.1038/ncomms3193  0.647
2013 Olson RS, Hintze A, Dyer FC, Knoester DB, Adami C. Predator confusion is sufficient to evolve swarming behaviour. Journal of the Royal Society, Interface / the Royal Society. 10: 20130305. PMID 23740485 DOI: 10.1098/Rsif.2013.0305  0.775
2013 Marstaller L, Hintze A, Adami C. The evolution of representation in simple cognitive networks Neural Computation. 25: 2079-2107. PMID 23663146 DOI: 10.1162/Neco_A_00475  0.688
2013 Olson RS, Knoester DB, Adami C. Critical interplay between density-dependent predation and evolution of the selfish herd Gecco 2013 - Proceedings of the 2013 Genetic and Evolutionary Computation Conference. 247-254. DOI: 10.1145/2463372.2463394  0.765
2013 Adami C, Hintze A. Evolutionary instability of zero-determinant strategies demonstrates that winning is not everything Nature Communications. 4. DOI: 10.1038/Ncomms3193  0.684
2012 Adami C. Adaptive walks on the fitness landscape of music Proceedings of the National Academy of Sciences of the United States of America. 109: 11898-11899. PMID 22778430 DOI: 10.1073/Pnas.1209301109  0.332
2012 Qian J, Ferguson TM, Shinde DN, Ramírez-Borrero AJ, Hintze A, Adami C, Niemz A. Sequence dependence of isothermal DNA amplification via EXPAR Nucleic Acids Research. 40. PMID 22416064 DOI: 10.1093/Nar/Gks230  0.752
2012 Adami C, Schossau J, Hintze A. Evolution and stability of altruist strategies in microbial games. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 011914. PMID 22400598 DOI: 10.1103/PhysRevE.85.011914  0.779
2012 Adami C. The use of information theory in evolutionary biology Annals of the New York Academy of Sciences. 1256: 49-65. PMID 22320231 DOI: 10.1111/J.1749-6632.2011.06422.X  0.337
2012 Ostman B, Hintze A, Adami C. Impact of epistasis and pleiotropy on evolutionary adaptation. Proceedings. Biological Sciences / the Royal Society. 279: 247-56. PMID 21697174 DOI: 10.1098/Rspb.2011.0870  0.794
2012 Adami C, Schossau J, Hintze A. Evolution and stability of altruist strategies in microbial games Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 85. DOI: 10.1103/Physreve.85.011914  0.687
2012 Ofria C, Adami C, Brown A, Bryson DM, Goodman E, James C, Kelsaw T, Lenski R, McKinley P, Pennock RT, Whittaker D. Preface Artificial Life 13: Proceedings of the 13th International Conference On the Simulation and Synthesis of Living Systems, Alife 2012. xv-xx.  0.735
2011 Dorn ED, Adami C. Robust monomer-distribution biosignatures in evolving digital biota Astrobiology. 11: 959-968. PMID 22091485 DOI: 10.1089/Ast.2010.0556  0.777
2011 Edlund JA, Chaumont N, Hintze A, Koch C, Tononi G, Adami C. Integrated information increases with fitness in the evolution of animats. Plos Computational Biology. 7: e1002236. PMID 22028639 DOI: 10.1371/Journal.Pcbi.1002236  0.769
2011 Adami C, Qian J, Rupp M, Hintze A. Information content of colored motifs in complex networks. Artificial Life. 17: 375-90. PMID 21762026 DOI: 10.1162/Artl_A_00045  0.767
2011 Qian J, Hintze A, Adami C. Colored motifs reveal computational building blocks in the C. elegans Brain Plos One. 6. PMID 21408227 DOI: 10.1371/Journal.Pone.0017013  0.767
2011 Dorn ED, Nealson KH, Adami C. Monomer abundance distribution patterns as a universal biosignature: Examples from terrestrial and digital life Journal of Molecular Evolution. 72: 283-295. PMID 21253717 DOI: 10.1007/S00239-011-9429-4  0.764
2010 Iliopoulos D, Hintze A, Adami C. Critical dynamics in the evolution of stochastic strategies for the iterated Prisoner's Dilemma Plos Computational Biology. 6. PMID 20949101 DOI: 10.1371/Journal.Pcbi.1000948  0.702
2010 Hintze A, Adami C. Modularity and anti-modularity in networks with arbitrary degree distribution Biology Direct. 5. PMID 20459629 DOI: 10.1186/1745-6150-5-32  0.664
2008 Hintze A, Adami C. Evolution of complex modular biological networks Plos Computational Biology. 4. PMID 18266463 DOI: 10.1371/Journal.Pcbi.0040023  0.681
2007 Chaumont N, Egli R, Adami C. Evolving virtual creatures and catapults Artificial Life. 13: 139-157. PMID 17355189 DOI: 10.1162/Artl.2007.13.2.139  0.779
2006 Forster R, Adami C, Wilke CO. Selection for mutational robustness in finite populations. Journal of Theoretical Biology. 243: 181-90. PMID 16901510 DOI: 10.1016/J.Jtbi.2006.06.020  0.723
2006 Adami C. Digital genetics: Unravelling the genetic basis of evolution Nature Reviews Genetics. 7: 109-118. PMID 16418746 DOI: 10.1038/Nrg1771  0.34
2005 Drummond DA, Bloom JD, Adami C, Wilke CO, Arnold FH. Why highly expressed proteins evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 102: 14338-43. PMID 16176987 DOI: 10.1073/Pnas.0504070102  0.761
2005 Bloom JD, Silberg JJ, Wilke CO, Drummond DA, Adami C, Arnold FH. Thermodynamic prediction of protein neutrality. Proceedings of the National Academy of Sciences of the United States of America. 102: 606-11. PMID 15644440 DOI: 10.1073/Pnas.0406744102  0.749
2005 Terrile RJ, Adami C, Aghazarian H, Chau SN, Dang VT, Ferguson MI, Fink W, Huntsberger TL, Klimeck G, Kordon MA, Lee S, Von Allmen P, Xu J. Evolutionary computation technologies for space systems Ieee Aerospace Conference Proceedings. 2005. DOI: 10.1109/AERO.2005.1559733  0.482
2004 Chow SS, Wilke CO, Ofria C, Lenski RE, Adami C. Adaptive radiation from resource competition in digital organisms. Science (New York, N.Y.). 305: 84-6. PMID 15232105 DOI: 10.1126/Science.1096307  0.776
2004 Bloom JD, Adami C. Evolutionary rate depends on number of protein-protein interactions independently of gene expression level: Response Bmc Evolutionary Biology. 4. PMID 15171796 DOI: 10.1186/1471-2148-4-14  0.518
2004 Bloom JD, Wilke CO, Arnold FH, Adami C. Stability and the evolvability of function in a model protein. Biophysical Journal. 86: 2758-64. PMID 15111394 DOI: 10.1016/S0006-3495(04)74329-5  0.688
2004 Wagenaar DA, Adami C. Influence of chance, history, and adaptation on digital evolution. Artificial Life. 10: 181-90. PMID 15107230 DOI: 10.1162/106454604773563603  0.34
2004 Edlund JA, Adami C. Evolution of robustness in digital organisms Artificial Life. 10: 167-179. PMID 15107229 DOI: 10.1162/106454604773563595  0.342
2004 White JS, Adami C. Bifurcation into functional niches in adaptation. Artificial Life. 10: 135-44. PMID 15107226 DOI: 10.1162/106454604773563568  0.39
2004 Adami C, Wilke CO. Experiments in digital evolution (Editors' introduction to the special issue) Artificial Life. 10: 117-122. DOI: 10.1162/106454604773563540  0.507
2004 Adami C. Information theory in molecular biology Physics of Life Reviews. 1: 3-22. DOI: 10.1016/J.Plrev.2004.01.002  0.302
2003 Bloom JD, Adami C. Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets Bmc Evolutionary Biology. 3. PMID 14525624 DOI: 10.1186/1471-2148-3-21  0.523
2003 Ofria C, Adami C, Collier TC. Selective pressures on genomes in molecular evolution. Journal of Theoretical Biology. 222: 477-83. PMID 12781746 DOI: 10.1016/S0022-5193(03)00062-6  0.74
2003 Lenski RE, Ofria C, Pennock RT, Adami C. The evolutionary origin of complex features. Nature. 423: 139-44. PMID 12736677 DOI: 10.1038/Nature01568  0.797
2003 Wilke CO, Lenski RE, Adami C. Compensatory mutations cause excess of antagonistic epistasis in RNA secondary structure folding. Bmc Evolutionary Biology. 3: 3. PMID 12590655 DOI: 10.1186/1471-2148-3-3  0.722
2003 Wilke CO, Adami C. Evolution of mutational robustness. Mutation Research. 522: 3-11. PMID 12517406 DOI: 10.1016/S0027-5107(02)00307-X  0.547
2003 Campos P, Adami C, Wilke C. Erratum to “Optimal adaptive performance and delocalization in NK fitness landscapes” Physica a: Statistical Mechanics and Its Applications. 318: 637. DOI: 10.1016/S0378-4371(02)01554-6  0.479
2002 Adami C. What is complexity? Bioessays. 24: 1085-1094. PMID 12447974 DOI: 10.1002/Bies.10192  0.35
2002 Adami C, Chu J. Critical and near-critical branching processes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 011907. PMID 12241384 DOI: 10.1103/Physreve.66.011907  0.497
2002 Ofria C, Adami C, Collier TC. Design of evolvable computer languages Ieee Transactions On Evolutionary Computation. 6: 420-424. DOI: 10.1109/Tevc.2002.802442  0.729
2002 Campos PRA, Adami C, Wilke CO. Optimal adaptive performance and delocalization in NK fitness landscapes Physica a: Statistical Mechanics and Its Applications. 304: 495-506. DOI: 10.1016/S0378-4371(01)00572-6  0.541
2002 Wilke CO, Adami C. The biology of digital organisms Trends in Ecology and Evolution. 17: 528-532. DOI: 10.1016/S0169-5347(02)02612-5  0.557
2002 Adami C. Sequence complexity in Darwinian evolution Complexity. 8: 49-56. DOI: 10.1002/Cplx.10071  0.367
2002 Kamp C, Wilke CO, Adami C, Bornholdt S. Viral evolution under the pressure of an adaptive immune system: Optimal mutation rates for viral escape Complexity. 8: 28-33. DOI: 10.1002/Cplx.10067  0.516
2001 Wilke CO, Wang JL, Ofria C, Lenski RE, Adami C. Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature. 412: 331-3. PMID 11460163 DOI: 10.1038/35085569  0.785
2001 Wilke CO, Adami C. Interaction between directional epistasis and average mutational effects Proceedings of the Royal Society B: Biological Sciences. 268: 1469-1474. PMID 11454290 DOI: 10.1098/Rspb.2001.1690  0.548
2001 Adami C, Koonin SE. Complex langevin equation and the many-fermion problem Physical Review C - Nuclear Physics. 63: 343191-3431910. DOI: 10.1103/Physrevc.63.034319  0.471
2000 Astor JC, Adami C. A developmental model for the evolution of artificial neural networks Artificial Life. 6: 189-218. PMID 11224915 DOI: 10.1162/106454600568834  0.314
2000 Adami C, Ofria C, Collier TC. Evolution of biological complexity. Proceedings of the National Academy of Sciences of the United States of America. 97: 4463-8. PMID 10781045 DOI: 10.1073/Pnas.97.9.4463  0.744
1999 Chu J, Adami C. A simple explanation for taxon abundance patterns Proceedings of the National Academy of Sciences of the United States of America. 96: 15017-15019. PMID 10611330 DOI: 10.1073/Pnas.96.26.15017  0.504
1999 Lenski RE, Ofria C, Collier TC, Adami C. Genome complexity, robustness and genetic interactions in digital organisms. Nature. 400: 661-4. PMID 10458160 DOI: 10.1038/23245  0.798
1999 Ofria C, Adami C, Collier TC, Hsu GK. Evolution of differentiated expression patterns in digital organisms Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1674: 129-138. DOI: 10.1007/3-540-48304-7_19  0.699
1993 Adami C, Brown GE. Matter under extreme conditions Physics Reports. 234: 1-71. DOI: 10.1016/0370-1573(93)90126-X  0.436
1992 Adami C, Zahed I. Finite-temperature QCD sum rules for the nucleon. Physical Review D: Particles and Fields. 45: 4312-4322. PMID 10014337 DOI: 10.1103/Physrevd.45.4312  0.481
1992 Adami C, Brown GE. Order of the QCD transition and QCD sum rules Physical Review D. 46: 478-481. DOI: 10.1103/Physrevd.46.478  0.429
1992 Adami C, Zahed I. Finite-temperature QCD sum rules for the nucleon Physical Review D. 45: 4312-4322. DOI: 10.1103/PhysRevD.45.4312  0.4
1991 Adami C, Hatsuda T, Zahed I. QCD sum rules at low temperature. Physical Review D: Particles and Fields. 43: 921-932. PMID 10013454 DOI: 10.1103/Physrevd.43.921  0.484
1991 Adami C, Hatsuda T, Zahed I. QCD sum rules at low temperature Physical Review D. 43: 921-932. DOI: 10.1103/PhysRevD.43.921  0.407
1991 Adami C, Brown GE. Isospin breaking in nuclear physics: The Nolen-Schiffer effect Zeitschrift FüR Physik a: Hadrons and Nuclei. 340: 93-100. DOI: 10.1007/Bf01284485  0.439
1989 Adami C, Prakash M, Zahed I. Charmonium disintegration by field-ionization Nuclear Physics, Section A. 498: 501-506. DOI: 10.1016/0375-9474(89)90631-3  0.39
1989 Adami C, Prakash M, Zahed I. Charmonium disintegration by field ionization Physics Letters B. 217: 5-8. DOI: 10.1016/0375-9474(89)90631-3  0.47
1988 Adami C, Zahed I. The width of the Δ-isobar in chiral soliton models Physics Letters B. 213: 373-375. DOI: 10.1016/0370-2693(88)91778-9  0.475
1988 Adami C, Zahed I. Soliton quantization in chiral models with vector mesons Physics Letters B. 215: 387-391. DOI: 10.1016/0370-2693(88)91453-0  0.483
Show low-probability matches.