| Year |
Citation |
Score |
| 2019 |
Sana G, Madigan JP, Gartner JJ, Fourrez M, Lin J, Qutob N, Narayan J, Shukla S, Ambudkar SV, Xia D, Rosenberg SA, Gottesman MM, Samuels Y, Gillet JP. Exome sequencing of ABCB5 identifies recurrent melanoma mutations that result in increased proliferative and invasive capacities. The Journal of Investigative Dermatology. PMID 30905807 DOI: 10.1016/j.jid.2019.01.036 |
0.361 |
|
| 2018 |
Qutob N, Masuho I, Alon M, Emmanuel R, Cohen I, Di Pizio A, Madore J, Elkahloun A, Ziv T, Levy R, Gartner JJ, Hill VK, Lin JC, Hevroni Y, Greenberg P, et al. RGS7 is recurrently mutated in melanoma and promotes migration and invasion of human cancer cells. Scientific Reports. 8: 653. PMID 29330521 DOI: 10.1038/S41598-017-18851-4 |
0.304 |
|
| 2017 |
Arafeh R, Qutob N, Emmanuel RR, Madore J, Elkahloun A, Wilmott JSJS, Gartner JJ, Pizio AD, Rotkopf R, Dutton-Regester K, Hill V, Pritchard A, Lin JC, Rosenberg SA, Khan J, et al. Abstract LB-031: Deciphering distinct roles of RASA2 in melanomagenesis Cancer Research. 77. DOI: 10.1158/1538-7445.Am2017-Lb-031 |
0.372 |
|
| 2016 |
Chang W, Brohl A, Patidar R, Sindiri S, Shern JF, Wei JS, Song YK, Yohe ME, Gryder BE, Zhang S, Calzone KA, Shivaprasad N, Wen X, Badgett T, Miettinen M, ... ... Lin JC, et al. Multi-Dimensional ClinOmics for Precision Therapy of Children and Adolescent Young Adults with Relapsed and Refractory Cancer: A report from the Center for Cancer Research. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 26994145 DOI: 10.1158/1078-0432.Ccr-15-2717 |
0.475 |
|
| 2015 |
Sager M, Yeat NC, Pajaro-Van der Stadt S, Lin C, Ren Q, Lin J. Transcriptomics in cancer diagnostics: developments in technology, clinical research and commercialization. Expert Review of Molecular Diagnostics. 1-15. PMID 26565429 DOI: 10.1586/14737159.2015.1105133 |
0.351 |
|
| 2015 |
Arafeh R, Qutob N, Emmanuel R, Keren-Paz A, Madore J, Elkahloun A, Wilmott JS, Gartner JJ, Di Pizio A, Winograd-Katz S, Sindiri S, Rotkopf R, Dutton-Regester K, Johansson P, Pritchard AL, ... ... Lin JC, et al. Recurrent inactivating RASA2 mutations in melanoma. Nature Genetics. PMID 26502337 DOI: 10.1038/Ng.3427 |
0.373 |
|
| 2015 |
Yeat NC, Lin C, Sager M, Lin J. Cancer proteomics: developments in technology, clinical use and commercialization. Expert Review of Proteomics. 1-15. PMID 26145529 DOI: 10.1586/14789450.2015.1051969 |
0.403 |
|
| 2015 |
Shen T, Pajaro-Van de Stadt SH, Yeat NC, Lin JC. Clinical applications of next generation sequencing in cancer: from panels, to exomes, to genomes. Frontiers in Genetics. 6: 215. PMID 26136771 DOI: 10.3389/fgene.2015.00215 |
0.387 |
|
| 2015 |
Walia V, Prickett T, Kim J, Gartner JJ, Lin JC, Rosenberg SA, Elble RC, Solomon DA, Waldman T, Samuels Y. Abstract LB-065: Mutational and functional analysis of the tumor suppressor PTPRD in human melanoma Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-065 |
0.331 |
|
| 2014 |
Walia V, Prickett TD, Kim JS, Gartner JJ, Lin JC, Zhou M, Rosenberg SA, Elble RC, Solomon DA, Waldman T, Samuels Y. Mutational and functional analysis of the tumor-suppressor PTPRD in human melanoma. Human Mutation. 35: 1301-10. PMID 25113440 DOI: 10.1002/Humu.22630 |
0.359 |
|
| 2014 |
Prickett TD, Zerlanko B, Gartner JJ, Parker SC, Dutton-Regester K, Lin JC, Teer JK, Wei X, Jiang J, Chen G, Davies MA, Gershenwald JE, Robinson W, Robinson S, et al. Somatic mutations in MAP3K5 attenuate its proapoptotic function in melanoma through increased binding to thioredoxin. The Journal of Investigative Dermatology. 134: 452-60. PMID 24008424 DOI: 10.1038/jid.2013.365 |
0.343 |
|
| 2013 |
Gartner JJ, Parker SC, Prickett TD, Dutton-Regester K, Stitzel ML, Lin JC, Davis S, Simhadri VL, Jha S, Katagiri N, Gotea V, Teer JK, Wei X, Morken MA, Bhanot UK, et al. Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma. Proceedings of the National Academy of Sciences of the United States of America. 110: 13481-6. PMID 23901115 DOI: 10.1073/Pnas.1304227110 |
0.432 |
|
| 2013 |
Robbins PF, Lu YC, El-Gamil M, Li YF, Gross C, Gartner J, Lin JC, Teer JK, Cliften P, Tycksen E, Samuels Y, Rosenberg SA. Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells. Nature Medicine. 19: 747-52. PMID 23644516 DOI: 10.1038/nm.3161 |
0.349 |
|
| 2013 |
Ong FS, Lin JC, Das K, Grosu DS, Fan JB. Translational utility of next-generation sequencing. Genomics. 102: 137-9. PMID 23631825 DOI: 10.1016/J.Ygeno.2013.04.012 |
0.396 |
|
| 2012 |
Gartner JJ, Davis S, Wei X, Lin JC, Trivedi NS, Teer JK, Meltzer PS, Rosenberg SA, Samuels Y. Comparative exome sequencing of metastatic lesions provides insights into the mutational progression of melanoma. Bmc Genomics. 13: 505. PMID 23006843 DOI: 10.1186/1471-2164-13-505 |
0.412 |
|
| 2012 |
Walia V, Mu EW, Lin JC, Samuels Y. Delving into somatic variation in sporadic melanoma Pigment Cell and Melanoma Research. 25: 155-170. PMID 22260482 DOI: 10.1111/j.1755-148X.2012.00976.x |
0.381 |
|
| 2012 |
Li R, Zhu J, Xie Z, Liao G, Hu S, Woodard C, Lin J, Hayward GS, Qian J, Zhu H, Hayward SD. Herpesviruses control the DNA damage response through TIP60 Infectious Agents and Cancer. 7. DOI: 10.1186/1750-9378-7-S1-O8 |
0.35 |
|
| 2012 |
Samuels Y, Prickett TD, Wei X, Lin JC, Teer JK, Rosenberg SA. Towards Deciphering the Genetic Landscape in Melanoma Annals of Oncology. 23. DOI: 10.1016/S0923-7534(20)32625-9 |
0.402 |
|
| 2011 |
Gerstung M, Eriksson N, Lin J, Vogelstein B, Beerenwinkel N. The temporal order of genetic and pathway alterations in tumorigenesis. Plos One. 6: e27136. PMID 22069497 DOI: 10.1371/Journal.Pone.0027136 |
0.589 |
|
| 2011 |
Li R, Zhu J, Xie Z, Liao G, Liu J, Chen MR, Hu S, Woodard C, Lin J, Taverna SD, Desai P, Ambinder RF, Hayward GS, Qian J, Zhu H, et al. Conserved herpesvirus kinases target the DNA damage response pathway and TIP60 histone acetyltransferase to promote virus replication. Cell Host & Microbe. 10: 390-400. PMID 22018239 DOI: 10.1016/J.Chom.2011.08.013 |
0.324 |
|
| 2011 |
Prickett TD, Wei X, Cardenas-Navia I, Teer JK, Lin JC, Walia V, Gartner J, Jiang J, Cherukuri PF, Molinolo A, Davies MA, Gershenwald JE, Stemke-Hale K, Rosenberg SA, Margulies EH, et al. Exon capture analysis of G protein-coupled receptors identifies activating mutations in GRM3 in melanoma. Nature Genetics. 43: 1119-26. PMID 21946352 DOI: 10.1038/Ng.950 |
0.417 |
|
| 2011 |
Wei X, Moncada-Pazos A, Cal S, Soria-Valles C, Gartner J, Rudloff U, Lin JC, Rosenberg SA, López-Otín C, Samuels Y. Analysis of the disintegrin-metalloproteinases family reveals ADAM29 and ADAM7 are often mutated in melanoma. Human Mutation. 32: E2148-75. PMID 21618342 DOI: 10.1002/Humu.21477 |
0.447 |
|
| 2011 |
Wei X, Walia V, Lin JC, Teer JK, Prickett TD, Gartner J, Davis S, Stemke-Hale K, Davies MA, Gershenwald JE, Robinson W, Robinson S, Rosenberg SA, Samuels Y. Exome sequencing identifies GRIN2A as frequently mutated in melanoma. Nature Genetics. 43: 442-6. PMID 21499247 DOI: 10.1038/Ng.810 |
0.517 |
|
| 2011 |
Parsons DW, Li M, Zhang X, Jones S, Leary RJ, Lin JC, Boca SM, Carter H, Samayoa J, Bettegowda C, Gallia GL, Jallo GI, Binder ZA, Nikolsky Y, Hartigan J, et al. The genetic landscape of the childhood cancer medulloblastoma. Science (New York, N.Y.). 331: 435-9. PMID 21163964 DOI: 10.1126/Science.1198056 |
0.603 |
|
| 2011 |
Prickett TD, Wei X, Viloria CG, Molinolo A, Lin JC, Cruz P, Rosenberg SA, Davies MA, Gershenwald JE, López-Otin C, Samuels Y. Abstract 4970: Mutational and functional analysis reveals ADAMTS18 metalloproteinase as a novel driver in melanoma Cancer Research. 71: 4970-4970. DOI: 10.1158/1538-7445.Am2011-4970 |
0.457 |
|
| 2010 |
Wei X, Prickett TD, Viloria CG, Molinolo A, Lin JC, Cardenas-Navia I, Cruz P, Rosenberg SA, Davies MA, Gershenwald JE, López-Otín C, Samuels Y. Mutational and functional analysis reveals ADAMTS18 metalloproteinase as a novel driver in melanoma. Molecular Cancer Research : McR. 8: 1513-25. PMID 21047771 DOI: 10.1158/1541-7786.Mcr-10-0262 |
0.444 |
|
| 2010 |
Cárdenas-Navia LI, Cruz P, Lin JC, Rosenberg SA, Samuels Y. Novel somatic mutations in heterotrimeric G proteins in melanoma. Cancer Biology & Therapy. 10: 33-7. PMID 20424519 DOI: 10.4161/Cbt.10.1.11949 |
0.388 |
|
| 2009 |
Hu S, Xie Z, Onishi A, Yu X, Jiang L, Lin J, Rho HS, Woodard C, Wang H, Jeong JS, Long S, He X, Wade H, Blackshaw S, Qian J, et al. Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell. 139: 610-22. PMID 19879846 DOI: 10.1016/J.Cell.2009.08.037 |
0.372 |
|
| 2009 |
Prickett TD, Agrawal NS, Wei X, Yates KE, Lin JC, Wunderlich JR, Cronin JC, Cruz P, Rosenberg SA, Samuels Y. Analysis of the tyrosine kinome in melanoma reveals recurrent mutations in ERBB4. Nature Genetics. 41: 1127-32. PMID 19718025 DOI: 10.1038/Ng.438 |
0.403 |
|
| 2009 |
Blackford A, Serrano OK, Wolfgang CL, Parmigiani G, Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Eshleman JR, Goggins M, Jaffee EM, Iacobuzio-Donahue CA, Maitra A, Cameron JL, et al. SMAD4 gene mutations are associated with poor prognosis in pancreatic cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 15: 4674-9. PMID 19584151 DOI: 10.1158/1078-0432.Ccr-09-0227 |
0.571 |
|
| 2009 |
Wan J, Lin J, Zack DJ, Qian J. Relating periodicity of nucleosome organization and gene regulation. Bioinformatics (Oxford, England). 25: 1782-8. PMID 19447785 DOI: 10.1093/Bioinformatics/Btp323 |
0.367 |
|
| 2009 |
Duncan CG, Leary RJ, Lin JC, Cummins J, Di C, Schaefer CF, Wang TL, Riggins GJ, Edwards J, Bigner D, Kopelovich L, Vogelstein B, Kinzler KW, Velculescu VE, Yan H. Identification of microbial DNA in human cancer. Bmc Medical Genomics. 2: 22. PMID 19426505 DOI: 10.1186/1755-8794-2-22 |
0.716 |
|
| 2009 |
Cronin JC, Wunderlich J, Loftus SK, Prickett TD, Wei X, Ridd K, Vemula S, Burrell AS, Agrawal NS, Lin JC, Banister CE, Buckhaults P, Rosenberg SA, Bastian BC, Pavan WJ, et al. Frequent mutations in the MITF pathway in melanoma. Pigment Cell & Melanoma Research. 22: 435-44. PMID 19422606 DOI: 10.1111/J.1755-148X.2009.00578.X |
0.468 |
|
| 2009 |
Palavalli LH, Prickett TD, Wunderlich JR, Wei X, Burrell AS, Porter-Gill P, Davis S, Wang C, Cronin JC, Agrawal NS, Lin JC, Westbroek W, Hoogstraten-Miller S, Molinolo AA, Fetsch P, et al. Analysis of the matrix metalloproteinase family reveals that MMP8 is often mutated in melanoma. Nature Genetics. 41: 518-20. PMID 19330028 DOI: 10.1038/Ng.340 |
0.349 |
|
| 2009 |
Parmigiani G, Boca S, Lin J, Kinzler KW, Velculescu V, Vogelstein B. Design and analysis issues in genome-wide somatic mutation studies of cancer Genomics. 93: 17-21. PMID 18692126 DOI: 10.1016/J.Ygeno.2008.07.005 |
0.651 |
|
| 2008 |
Leary RJ, Lin JC, Cummins J, Boca S, Wood LD, Parsons DW, Jones S, Sjöblom T, Park BH, Parsons R, Willis J, Dawson D, Willson JK, Nikolskaya T, Nikolsky Y, et al. Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proceedings of the National Academy of Sciences of the United States of America. 105: 16224-9. PMID 18852474 DOI: 10.1073/Pnas.0808041105 |
0.721 |
|
| 2008 |
Jones S, Zhang X, Parsons DW, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Kamiyama H, Jimeno A, Hong SM, Fu B, Lin MT, Calhoun ES, Kamiyama M, et al. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science (New York, N.Y.). 321: 1801-6. PMID 18772397 DOI: 10.1126/Science.1164368 |
0.595 |
|
| 2008 |
Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, et al. An integrated genomic analysis of human glioblastoma multiforme. Science (New York, N.Y.). 321: 1807-12. PMID 18772396 DOI: 10.1126/Science.1164382 |
0.661 |
|
| 2008 |
Lin J, Li M. Molecular profiling in the age of cancer genomics Expert Review of Molecular Diagnostics. 8: 263-276. PMID 18598106 DOI: 10.1586/14737159.8.3.263 |
0.443 |
|
| 2007 |
Wood LD, Parsons DW, Jones S, Lin J, Sjöblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J, Silliman N, Szabo S, Dezso Z, Ustyanksky V, Nikolskaya T, et al. The genomic landscapes of human breast and colorectal cancers. Science (New York, N.Y.). 318: 1108-13. PMID 17932254 DOI: 10.1126/science.1145720 |
0.765 |
|
| 2007 |
Lin J, Gan CM, Zhang X, Jones S, Sjöblom T, Wood LD, Parsons DW, Papadopoulos N, Kinzler KW, Vogelstein B, Parmigiani G, Velculescu VE. A multidimensional analysis of genes mutated in breast and colorectal cancers Genome Research. 17: 1304-1318. PMID 17693572 DOI: 10.1101/Gr.6431107 |
0.643 |
|
| 2007 |
Lin J, Sjöblom T. Genome-wide mutational analyses of breast and colorectal cancers Discovery Medicine. 7: 13-19. PMID 17343800 |
0.521 |
|
| 2007 |
Lin J, Qian J. Systems biology approach to integrative comparative genomics Expert Review of Proteomics. 4: 107-119. PMID 17288519 DOI: 10.1586/14789450.4.1.107 |
0.373 |
|
| 2007 |
Parmigiani G, Lin J, Boca SM, Sjöblom T, Jones S, Wood LD, Parsons DW, Barber T, Buckhaults P, Markowitz SD, Park BH, Bachman KE, Papadopoulos N, Vogelstein B, Kinzler KW, et al. Response to comments on "The consensus coding sequences of human breast and colorectal cancers" Science. 317: 1500d. DOI: 10.1126/Science.1138773 |
0.644 |
|
| 2006 |
Bettegowda C, Huang X, Lin J, Cheong I, Kohli M, Szabo SA, Zhang X, Diaz LA, Velculescu VE, Parmigiani G, Kinzler KW, Vogelstein B, Zhou S. The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT Nature Biotechnology. 24: 1573-1580. PMID 17115055 DOI: 10.1038/Nbt1256 |
0.711 |
|
| 2006 |
Yu X, Lin J, Zack DJ, Qian J. Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues. Nucleic Acids Research. 34: 4925-36. PMID 16982645 DOI: 10.1093/Nar/Gkl595 |
0.322 |
|
| 2006 |
Sjöblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N, Szabo S, Buckhaults P, Farrell C, Meeh P, Markowitz SD, et al. The consensus coding sequences of human breast and colorectal cancers Science. 314: 268-274. PMID 16959974 DOI: 10.1126/science.1133427 |
0.728 |
|
| 2006 |
Yu X, Lin J, Masuda T, Esumi N, Zack DJ, Qian J. Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae. Nucleic Acids Research. 34: 917-27. PMID 16464824 DOI: 10.1093/Nar/Gkj487 |
0.317 |
|
| 2002 |
Lin J, Qian J, Greenbaum D, Bertone P, Das R, Echols N, Senes A, Stenger B, Gerstein M. GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing. Nucleic Acids Research. 30: 4574-82. PMID 12384605 DOI: 10.1093/Nar/Gkf555 |
0.401 |
|
| 2002 |
Hegyi H, Lin J, Greenbaum D, Gerstein M. Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds. Proteins. 47: 126-41. PMID 11933060 DOI: 10.1002/Prot.10078 |
0.388 |
|
| 2001 |
Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M. Beyond synexpression relationships: Local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions Journal of Molecular Biology. 314: 1053-1066. PMID 11743722 DOI: 10.1006/Jmbi.2000.5219 |
0.337 |
|
| 2001 |
Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research. 29: 1750-64. PMID 11292848 DOI: 10.1093/Nar/29.8.1750 |
0.32 |
|
| 2000 |
Lin J, Gerstein M. Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels Genome Research. 10: 808-818. PMID 10854412 DOI: 10.1101/Gr.10.6.808 |
0.397 |
|
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